Rmu_sc0002192.1_g000012

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002192.1
OG0000591
Physical Location & Seq
Reverse (-)
52480 .. 53936
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002192.1_g000012.1.cds

Sequence Viewer

Length: 459 bp
atgtttataaagctcttgatgcttgggctcctctttgaatcttatggaattgatgaagctttgtggtggaatagtgaagaaaatgtagaaaatgggttggaggattgggaggtgtgttcagggaccatgaaggagttgttttgggggggccttcaacacacagtaatggtgtctagttctggttggcatgcggagttgttagctttgcttctagaagtgcagttggctattaatcagaatttcacaccggtgatagtggaaacaaattgtatggatttggttcaagctatctctggctcatccctttatcaatcggagttagggttcttaattaatgacttgcgaaacatgttgcatgacgctttagatgctaaagtggtttttggtagtaggcaggttaatctagtagcacatacgtactttggtgcaggaggccaaagctggtctgtttggtattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

152

Amino Acids

17.09

Weight (kDa)

4.32

Isoelectric Point (pI)

32.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 385
AciI CCGC 1 cut(s) 191
AcsI RAATTY 1 cut(s) 238
AfaI GTAC 1 cut(s) 419
AflIII ACRYGT 1 cut(s) 348
AgeI ACCGGT 1 cut(s) 247
AgsI TTSAA 3 cut(s) 38, 155, 284
AleI CACNNNNGTG 1 cut(s) 248
AloI GAACNNNNNNTCC 2 cut(s) 308, 340
AluBI AGCT 5 cut(s) 13, 59, 203, 287, 441
AluI AGCT 5 cut(s) 13, 59, 203, 287, 441
AoxI GGCC 2 cut(s) 148, 433
ApoI RAATTY 1 cut(s) 238
AseI ATTAAT 2 cut(s) 231, 333
AsiGI ACCGGT 1 cut(s) 247
AspS9I GGNCC 2 cut(s) 123, 148
AsuHPI GGTGA 1 cut(s) 262
AvaII GGWCC 1 cut(s) 123
BanII GRGCYC 1 cut(s) 30
BfaI CTAG 3 cut(s) 174, 212, 404
BfuAI ACCTGC 1 cut(s) 385
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 2 cut(s) 123, 148
BmiI GGNNCC 3 cut(s) 29, 124, 149
BmsI GCATC 2 cut(s) 9, 358
BsaAI YACGTR 1 cut(s) 417
BsaWI WCCGGW 1 cut(s) 247
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bse118I RCCGGY 1 cut(s) 247
BseGI GGATG 1 cut(s) 299
BseRI GAGGAG 1 cut(s) 20
BsgI GTGCAG 2 cut(s) 239, 447
BshFI GGCC 2 cut(s) 150, 435
BshTI ACCGGT 1 cut(s) 247
BsiSI CCGG 1 cut(s) 248
BslFI GGGAC 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 136
BsnI GGCC 2 cut(s) 150, 435
Bsp1286I GDGCHC 1 cut(s) 30
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 150, 435
BspLI GGNNCC 3 cut(s) 29, 124, 149
BspMI ACCTGC 1 cut(s) 385
BsrFI RCCGGY 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 163
BstBAI YACGTR 1 cut(s) 417
BstC8I GCNNGC 1 cut(s) 189
BstF5I GGATG 1 cut(s) 299
BstMWI GCNNNNNNNGC 2 cut(s) 19, 368
BstNSI RCATGY 2 cut(s) 191, 352
BstSNI TACGTA 1 cut(s) 417
BsuRI GGCC 2 cut(s) 150, 435
BtsCI GGATG 1 cut(s) 299
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 1 cut(s) 189
Cfr10I RCCGGY 1 cut(s) 247
Cfr13I GGNCC 2 cut(s) 123, 148
CseI GACGC 1 cut(s) 368
Csp6I GTAC 1 cut(s) 418
CspAI ACCGGT 1 cut(s) 247
CviAII CATG 4 cut(s) 127, 188, 349, 356
CviQI GTAC 1 cut(s) 418
Eco105I TACGTA 1 cut(s) 417
Eco24I GRGCYC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 123
EcoO109I RGGNCCY 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 30
FaeI CATG 4 cut(s) 130, 191, 352, 359
FaiI YATR 8 cut(s) 8, 45, 128, 189, 272, 350, 357, 414
FaqI GGGAC 1 cut(s) 136
FatI CATG 4 cut(s) 126, 187, 348, 355
FokI GGATG 1 cut(s) 286
FriOI GRGCYC 1 cut(s) 30
FspBI CTAG 3 cut(s) 174, 212, 404
HaeIII GGCC 2 cut(s) 150, 435
HapII CCGG 1 cut(s) 248
HgaI GACGC 1 cut(s) 368
Hin1II CATG 4 cut(s) 130, 191, 352, 359
HindIII AAGCTT 1 cut(s) 57
HinfI GANTC 1 cut(s) 38
HpaII CCGG 1 cut(s) 248
HphI GGTGA 1 cut(s) 262
Hpy188I TCNGA 2 cut(s) 237, 316
Hpy188III TCNNGA 2 cut(s) 16, 212
HpyAV CCTTC 2 cut(s) 124, 161
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 3 cut(s) 220, 355, 428
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 368
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 4 cut(s) 130, 191, 352, 359
LmnI GCTCC 1 cut(s) 33
LpnPI CCDG 7 cut(s) 105, 165, 261, 279, 380, 414, 427
LweI GCATC 2 cut(s) 9, 358
MaeI CTAG 3 cut(s) 174, 212, 404
MaeII ACGT 1 cut(s) 416
MboII GAAGA 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 4 cut(s) 48, 238, 265, 330
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 4 cut(s) 41, 94, 103, 425
MseI TTAA 4 cut(s) 231, 329, 333, 399
MslI CAYNNNNRTG 2 cut(s) 164, 248
MspI CCGG 1 cut(s) 248
MwoI GCNNNNNNNGC 2 cut(s) 19, 368
NlaIII CATG 4 cut(s) 130, 191, 352, 359
NlaIV GGNNCC 3 cut(s) 29, 124, 149
NspI RCATGY 2 cut(s) 191, 352
OliI CACNNNNGTG 1 cut(s) 248
PacI TTAATTAA 1 cut(s) 333
PaeI GCATGC 1 cut(s) 191
PciI ACATGT 1 cut(s) 348
PfeI GAWTC 1 cut(s) 38
PinAI ACCGGT 1 cut(s) 247
Ppu21I YACGTR 1 cut(s) 417
PscI ACATGT 1 cut(s) 348
PshBI ATTAAT 2 cut(s) 231, 333
PsiI TTATAA 1 cut(s) 8
PspN4I GGNNCC 3 cut(s) 29, 124, 149
PspPI GGNCC 2 cut(s) 123, 148
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
RseI CAYNNNNRTG 2 cut(s) 164, 248
SaqAI TTAA 4 cut(s) 231, 329, 333, 399
Sau96I GGNCC 2 cut(s) 123, 148
SduI GDGCHC 1 cut(s) 30
SetI ASST 8 cut(s) 15, 61, 114, 205, 289, 399, 419, 443
SfaNI GCATC 2 cut(s) 9, 358
SgrAI CRCCGGYG 1 cut(s) 247
SinI GGWCC 1 cut(s) 123
SmiMI CAYNNNNRTG 2 cut(s) 164, 248
SnaBI TACGTA 1 cut(s) 417
SphI GCATGC 1 cut(s) 191
Sse9I AATT 4 cut(s) 48, 238, 265, 330
SsiI CCGC 1 cut(s) 191
SspMI CTAG 3 cut(s) 174, 212, 404
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 1 cut(s) 419
TasI AATT 4 cut(s) 48, 238, 265, 330
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 4 cut(s) 231, 329, 333, 399
Tru9I TTAA 4 cut(s) 231, 329, 333, 399
TspDTI ATGAA 2 cut(s) 69, 143
VpaK11BI GGWCC 1 cut(s) 123
VspI ATTAAT 2 cut(s) 231, 333
XapI RAATTY 1 cut(s) 238
XbaI TCTAGA 1 cut(s) 211
XceI RCATGY 2 cut(s) 191, 352
XspI CTAG 3 cut(s) 174, 212, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.