Rmu_sc0009034.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009034.1
OG0000591
Physical Location & Seq
Forward (+)
1703 .. 2518
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009034.1_g000001.1.cds

Sequence Viewer

Length: 639 bp
atgatcttattaggtaatgtgaaggtttgtgcttggaaggcagcctctaatattcttcctacacgaattaggcgtagtgaaagaggtattgatattgatattcaatgtccgttttgtgatgaagaagttgagtccattattcatgccctacgagattgttcccatgcagttagtatgctccaggcccctgtagattttgctcctttattgatgactatttgggctacttggcgtaacagaaactcccggatttgggatgaggagtgcaagttggctactgatattgtgccaataacgatgggttggtgggaggataacaaggctgctcgcactccctcaccttctgattgggaggtgtgttcagggaccatgaaggagttgtttggggggggctttcgacacacagtaatggtgtctagttttgctcggcatgcggagttgttggctttgcttctacgagtgcagttgactattgatcagaatttcacaccggtgatagtggaaacagattgtatggatttagttcaagctatctctggctcatccctttatcaatcagagttggggttcttaattgatgacctgcgaaacatgttgcataatgctttagatgctaaggtggtttttggtagtaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

212

Amino Acids

23.88

Weight (kDa)

5.21

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 591
AciI CCGC 1 cut(s) 434
AcsI RAATTY 1 cut(s) 481
AfiI CCNNNNNNNGG 2 cut(s) 252, 253
AflIII ACRYGT 1 cut(s) 591
AgeI ACCGGT 1 cut(s) 490
AgsI TTSAA 2 cut(s) 104, 527
AjnI CCWGG 1 cut(s) 180
AleI CACNNNNGTG 1 cut(s) 491
AluBI AGCT 1 cut(s) 530
AluI AGCT 1 cut(s) 530
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 2 cut(s) 41, 323
ApoI RAATTY 1 cut(s) 481
AsiGI ACCGGT 1 cut(s) 490
AspS9I GGNCC 2 cut(s) 184, 366
AsuC2I CCSGG 1 cut(s) 247
AsuHPI GGTGA 2 cut(s) 330, 505
AvaII GGWCC 1 cut(s) 366
BbvI GCAGC 2 cut(s) 53, 310
BccI CCATC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 182
BclI TGATCA 1 cut(s) 475
BcnI CCSGG 1 cut(s) 247
BfaI CTAG 1 cut(s) 417
BfmI CTRYAG 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 591
BisI GCNGC 2 cut(s) 42, 324
BlsI GCNGC 2 cut(s) 43, 325
Bme1390I CCNGG 2 cut(s) 182, 247
Bme18I GGWCC 1 cut(s) 366
BmgT120I GGNCC 2 cut(s) 184, 366
BmiI GGNNCC 2 cut(s) 186, 367
BmrFI CCNGG 2 cut(s) 182, 247
BmsI GCATC 1 cut(s) 601
BpmI CTGGAG 1 cut(s) 164
Bpu10I CCTNAGC 1 cut(s) 615
BpuMI CCSGG 1 cut(s) 247
BsaWI WCCGGW 1 cut(s) 490
BsaXI ACNNNNNCTCC 4 cut(s) 227, 254, 257, 284
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 253
Bse118I RCCGGY 1 cut(s) 490
BseBI CCWGG 1 cut(s) 182
BseGI GGATG 2 cut(s) 262, 542
BseLI CCNNNNNNNGG 2 cut(s) 252, 253
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 2 cut(s) 53, 310
BsgI GTGCAG 1 cut(s) 482
BshFI GGCC 1 cut(s) 185
BshTI ACCGGT 1 cut(s) 490
BsiSI CCGG 2 cut(s) 247, 491
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 2 cut(s) 252, 253
BsmFI GGGAC 1 cut(s) 379
BsnI GGCC 1 cut(s) 185
Bsp143I GATC 2 cut(s) 3, 475
BspACI CCGC 1 cut(s) 434
BspANI GGCC 1 cut(s) 185
BspLI GGNNCC 2 cut(s) 186, 367
BspMI ACCTGC 1 cut(s) 591
BsrFI RCCGGY 1 cut(s) 490
BssAI RCCGGY 1 cut(s) 490
BssMI GATC 2 cut(s) 3, 475
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 406
BstC8I GCNNGC 2 cut(s) 328, 432
BstDEI CTNAG 1 cut(s) 615
BstF5I GGATG 2 cut(s) 262, 542
BstKTI GATC 2 cut(s) 6, 478
BstMBI GATC 2 cut(s) 3, 475
BstMWI GCNNNNNNNGC 3 cut(s) 38, 431, 611
BstNI CCWGG 1 cut(s) 182
BstNSI RCATGY 2 cut(s) 434, 595
BstSCI CCNGG 2 cut(s) 180, 245
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 53, 310
BsuRI GGCC 1 cut(s) 185
BtsCI GGATG 2 cut(s) 262, 542
BveI ACCTGC 1 cut(s) 591
Cac8I GCNNGC 2 cut(s) 328, 432
Cfr10I RCCGGY 1 cut(s) 490
Cfr13I GGNCC 2 cut(s) 184, 366
CspAI ACCGGT 1 cut(s) 490
CviAII CATG 5 cut(s) 143, 164, 370, 431, 592
CviJI RGCY 9 cut(s) 44, 185, 224, 275, 323, 393, 446, 530, 540
CviKI_1 RGCY 9 cut(s) 44, 185, 224, 275, 323, 393, 446, 530, 540
DdeI CTNAG 1 cut(s) 615
DpnI GATC 2 cut(s) 5, 477
DpnII GATC 2 cut(s) 3, 475
Eco47I GGWCC 1 cut(s) 366
EcoO109I RGGNCCY 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 180
FaeI CATG 5 cut(s) 146, 167, 373, 434, 595
FaiI YATR 8 cut(s) 144, 165, 176, 371, 432, 515, 593, 600
FaqI GGGAC 1 cut(s) 379
FatI CATG 5 cut(s) 142, 163, 369, 430, 591
FbaI TGATCA 1 cut(s) 475
Fnu4HI GCNGC 2 cut(s) 42, 324
FokI GGATG 2 cut(s) 269, 529
Fsp4HI GCNGC 2 cut(s) 42, 324
FspBI CTAG 1 cut(s) 417
GluI GCNGC 2 cut(s) 42, 324
GsuI CTGGAG 1 cut(s) 164
HaeIII GGCC 1 cut(s) 185
HapII CCGG 2 cut(s) 247, 491
Hin1II CATG 5 cut(s) 146, 167, 373, 434, 595
HincII GTYRAC 1 cut(s) 468
HindII GTYRAC 1 cut(s) 468
HinfI GANTC 1 cut(s) 131
HpaII CCGG 2 cut(s) 247, 491
HphI GGTGA 2 cut(s) 330, 505
Hpy166II GTNNAC 1 cut(s) 468
Hpy188I TCNGA 3 cut(s) 346, 480, 559
Hpy8I GTNNAC 1 cut(s) 468
HpyAV CCTTC 4 cut(s) 16, 31, 351, 367
HpyCH4III ACNGT 1 cut(s) 406
HpyCH4V TGCA 4 cut(s) 167, 267, 463, 598
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 431, 611
HpyF3I CTNAG 1 cut(s) 615
Hsp92II CATG 5 cut(s) 146, 167, 373, 434, 595
Ksp22I TGATCA 1 cut(s) 475
Kzo9I GATC 2 cut(s) 3, 475
LmnI GCTCC 2 cut(s) 183, 205
LpnPI CCDG 8 cut(s) 167, 194, 201, 260, 348, 504, 522, 596
Lsp1109I GCAGC 2 cut(s) 53, 310
LweI GCATC 1 cut(s) 601
MaeI CTAG 1 cut(s) 417
MaeIII GTNAC 1 cut(s) 233
MalI GATC 2 cut(s) 5, 477
MboI GATC 2 cut(s) 3, 475
MboII GAAGA 2 cut(s) 47, 134
MluCI AATT 3 cut(s) 66, 481, 573
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 6 cut(s) 55, 77, 253, 304, 346, 346
MseI TTAA 1 cut(s) 572
MslI CAYNNNNRTG 2 cut(s) 407, 491
MspI CCGG 2 cut(s) 247, 491
MspR9I CCNGG 2 cut(s) 182, 247
MvaI CCWGG 1 cut(s) 182
MwoI GCNNNNNNNGC 3 cut(s) 38, 431, 611
NciI CCSGG 1 cut(s) 247
NdeII GATC 2 cut(s) 3, 475
NlaIII CATG 5 cut(s) 146, 167, 373, 434, 595
NlaIV GGNNCC 2 cut(s) 186, 367
NmeAIII GCCGAG 1 cut(s) 406
NspI RCATGY 2 cut(s) 434, 595
OliI CACNNNNGTG 1 cut(s) 491
PaeI GCATGC 1 cut(s) 434
PciI ACATGT 1 cut(s) 591
PcsI WCGNNNNNNNCGW 1 cut(s) 70
PfoI TCCNGGA 1 cut(s) 245
PinAI ACCGGT 1 cut(s) 490
PkrI GCNGC 2 cut(s) 43, 325
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PscI ACATGT 1 cut(s) 591
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 186, 367
PspPI GGNCC 2 cut(s) 184, 366
RseI CAYNNNNRTG 2 cut(s) 407, 491
SaqAI TTAA 1 cut(s) 572
SatI GCNGC 2 cut(s) 42, 324
Sau3AI GATC 2 cut(s) 3, 475
Sau96I GGNCC 2 cut(s) 184, 366
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 2 cut(s) 182, 247
SetI ASST 9 cut(s) 16, 27, 88, 343, 357, 532, 585, 621, 638
SfaNI GCATC 1 cut(s) 601
SfcI CTRYAG 1 cut(s) 189
SgrAI CRCCGGYG 1 cut(s) 490
SinI GGWCC 1 cut(s) 366
SmiMI CAYNNNNRTG 2 cut(s) 407, 491
SphI GCATGC 1 cut(s) 434
Sse9I AATT 3 cut(s) 66, 481, 573
SsiI CCGC 1 cut(s) 434
SspI AATATT 1 cut(s) 52
SspMI CTAG 1 cut(s) 417
StyD4I CCNGG 2 cut(s) 180, 245
TaaI ACNGT 1 cut(s) 406
TaqI TCGA 1 cut(s) 397
TasI AATT 3 cut(s) 66, 481, 573
Tru1I TTAA 1 cut(s) 572
Tru9I TTAA 1 cut(s) 572
TseI GCWGC 2 cut(s) 41, 323
TspDTI ATGAA 3 cut(s) 131, 135, 386
TspGWI ACGGA 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 366
XapI RAATTY 1 cut(s) 481
XceI RCATGY 2 cut(s) 434, 595
XspI CTAG 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.