Rmu_sc0009955.1_g000004

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009955.1
OG0000591
Physical Location & Seq
Forward (+)
12361 .. 19222
6862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009955.1_g000004.1.cds

Sequence Viewer

Length: 1959 bp
atggacatcatattggcaatgggctctccaccaatatctggacttatccttggtcgttacctgcagcaatttcagtctcctcatgcgcaatgggttttggacctcatctcctccccagcactgccacttagtgttagacctcatgaagatcgatggatttggagtggggataagaaggggaggttcacagtcaaatcggcctatcatactgctaggtgtagaattttgggggaatctactcctgcctcgaatcctagttctgaactttggactcaattctggaaagctcatgtaccggggaaggtcaaagtatgtgtgtggaaggctgcttcaaatatcctacctactcggagcaggctgagtgaacgtggtattgatattgatacccaatgcccattatgtgaggaggaaattgaatctccccttcatgcactacgtgattgcatccatgccaagtctttcttgcagttggctaatctccccagctccaactctactacaagtgttgctaattggttacagactttctattctcagtctcctactacctttgcttccttgttgatggtgatttgggctacgtggagaaaccggaatgataaagtatggagtgatagtctcaaaccggtgtcagaagttgttcccttgacttttggatggtgggaagaatataaagctgcacactcatccaccagtgggatagggggtatctacagagatcatgaaggtacttgcctcagtgggtttcgacactcagttgcggtcacaagttcaactaggcacgttgaactcttagctttcatcctatggttacagttggctatttctcatggctttgttcccctagttgtggagtcagattgccaagtcttggtgtaccctccctcctcctcgagccgacggtcaaatttcaggtcaacgctcgaggaaagcttctcgattgtccccaggtcagctctcgctccagtccgcattaattgttggtctccgatctgcgttctctctctctctcactcttcccccgccctccccggcctgcaaagcccggacgccaactccacctactaccagagtctggccggccaccatggcgttgtcaccaactctctctctctctcaccgtcgtcgacctcgactgcagtcgtcgtcaacaactacatctccgacctcggtcttcctgatatcgttactctctctccgtggccgcaaagccgactgcggcgtttcgatcgacgagcagcatcaccaccacctcaggccagagatcagcgactgtttcggtgttgggctccggcgttgaagtcggctactacgcttgcagtctcgtcggaacgggtgttcaggccagtggttcgagcaggtgaaggtgttgcgatccctttagtagcaaacctgcagactgttgctacagttgaaggaggtgatcgtctcggtttagggatggcagtggggagggtaggaattcgaatactagggatcctcatccccgttacccgatttcccctgaatttgtcccctttagggtcaaataccctatgggtaccctacccgatgagaatttttgtcatccctatttcggttttggagactgagctcgagacagaaaaggagacggttcagttccaggtgatgtctttgttccatactttcaaggcagttaatgcaaaaaataagattatcttgggtaggcaggttaaaccttggtgtccttctccagctggttggctaaaagataatgttgatggggcgtataatatgcatgtgcgccgtggaggacttggagcagtttcagggactccttggttggttcaggcagatggtgaggatacttctgagattgggaggatcatagacgacatttctttggcattgacttctatggctggatcattcttttgccatgttcacagagaatctaataagattgctcacaagttagctcatagtgcccttgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

652

Amino Acids

71.74

Weight (kDa)

9.09

Isoelectric Point (pI)

58.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1349
Acc16I TGCGCA 1 cut(s) 87
Acc36I ACCTGC 4 cut(s) 69, 1349, 1401, 1681
Acc65I GGTACC 1 cut(s) 1540
AccB1I GGYRCC 1 cut(s) 1540
AccB7I CCANNNNNTGG 3 cut(s) 38, 871, 1075
AccI GTMKAC 1 cut(s) 1127
AciI CCGC 5 cut(s) 761, 970, 1023, 1205, 1219
AclWI GGATC 5 cut(s) 1369, 1471, 1484, 1853, 1894
AcoI YGGCCR 3 cut(s) 1077, 1081, 1202
AcsI RAATTY 5 cut(s) 222, 907, 1461, 1507, 1557
AcyI GRCGYC 1 cut(s) 1050
AdeI CACNNNGTG 2 cut(s) 131, 437
AfaI GTAC 4 cut(s) 294, 730, 878, 1542
AfiI CCNNNNNNNGG 7 cut(s) 38, 696, 850, 871, 1075, 1521, 1576
AgeI ACCGGT 1 cut(s) 625
AgsI TTSAA 7 cut(s) 333, 416, 774, 788, 1300, 1415, 1651
AjnI CCWGG 2 cut(s) 947, 1623
AloI GAACNNNNNNTCC 2 cut(s) 1322, 1354
AluBI AGCT 9 cut(s) 287, 486, 677, 797, 933, 956, 1594, 1718, 1940
AluI AGCT 9 cut(s) 287, 486, 677, 797, 933, 956, 1594, 1718, 1940
Alw21I GWGCWC 1 cut(s) 1596
Alw26I GTCTC 9 cut(s) 81, 543, 623, 990, 1327, 1433, 1580, 1592, 1604
AlwI GGATC 5 cut(s) 1369, 1471, 1484, 1853, 1894
AlwNI CAGNNNCTG 2 cut(s) 1075, 1273
Ama87I CYCGRG 3 cut(s) 892, 923, 1595
AoxI GGCC 7 cut(s) 198, 1033, 1077, 1081, 1202, 1257, 1343
ApeKI GCWGC 4 cut(s) 64, 326, 677, 1238
ApoI RAATTY 5 cut(s) 222, 907, 1461, 1507, 1557
ArsI GACNNNNNNTTYG 2 cut(s) 899, 931
AseI ATTAAT 1 cut(s) 975
AsiGI ACCGGT 1 cut(s) 625
Asp700I GAANNNNTTC 1 cut(s) 639
Asp718I GGTACC 1 cut(s) 1540
AspLEI GCGC 2 cut(s) 88, 1767
AspS9I GGNCC 1 cut(s) 100
AsuC2I CCSGG 3 cut(s) 297, 1032, 1046
AsuHPI GGTGA 8 cut(s) 580, 1090, 1110, 1236, 1373, 1433, 1639, 1832
AsuII TTCGAA 1 cut(s) 1465
AvaI CYCGRG 3 cut(s) 892, 923, 1595
AvaII GGWCC 1 cut(s) 100
AxyI CCTNAGG 1 cut(s) 1254
BaeGI GKGCMC 1 cut(s) 1951
BamHI GGATCC 1 cut(s) 1476
BanI GGYRCC 1 cut(s) 1540
BanII GRGCYC 3 cut(s) 26, 1291, 1596
BbsI GAAGAC 1 cut(s) 1166
Bbv12I GWGCWC 1 cut(s) 1596
BbvI GCAGC 4 cut(s) 76, 313, 664, 1250
BccI CCATC 6 cut(s) 147, 559, 651, 1435, 1736, 1811
BceAI ACGGC 1 cut(s) 1752
BcgI CGANNNNNNTGC 2 cut(s) 1308, 1342
BciT130I CCWGG 2 cut(s) 949, 1625
BciVI GTATCC 1 cut(s) 1819
BcnI CCSGG 3 cut(s) 297, 1032, 1046
BcoDI GTCTC 9 cut(s) 81, 543, 623, 990, 1327, 1433, 1580, 1592, 1604
BfaI CTAG 5 cut(s) 213, 255, 777, 845, 1472
BfmI CTRYAG 5 cut(s) 62, 712, 1137, 1394, 1407
BfuAI ACCTGC 4 cut(s) 69, 1349, 1401, 1681
BfuI GTATCC 1 cut(s) 1819
BglI GCCNNNNNGGC 1 cut(s) 1089
BisI GCNGC 6 cut(s) 65, 327, 678, 1205, 1220, 1239
BlsI GCNGC 6 cut(s) 66, 328, 679, 1206, 1221, 1240
Bme1390I CCNGG 5 cut(s) 297, 949, 1032, 1046, 1625
Bme18I GGWCC 1 cut(s) 100
BmeT110I CYCGRG 3 cut(s) 892, 923, 1595
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 3 cut(s) 1290, 1478, 1542
BmrFI CCNGG 5 cut(s) 297, 949, 1032, 1046, 1625
BmsI GCATC 2 cut(s) 453, 1250
BoxI GACNNNNGTC 2 cut(s) 1139, 1170
BpiI GAAGAC 1 cut(s) 1166
BpmI CTGGAG 2 cut(s) 948, 1698
Bpu14I TTCGAA 1 cut(s) 1465
BpuMI CCSGG 3 cut(s) 297, 1032, 1046
Bsa29I ATCGAT 1 cut(s) 151
BsaAI YACGTR 2 cut(s) 437, 582
BsaBI GATNNNNATC 1 cut(s) 1481
BsaHI GRCGYC 1 cut(s) 1050
BsaI GGTCTC 1 cut(s) 990
BsaWI WCCGGW 2 cut(s) 591, 625
Bsc4I CCNNNNNNNGG 7 cut(s) 38, 696, 850, 871, 1075, 1521, 1576
Bse118I RCCGGY 2 cut(s) 625, 1079
Bse1I ACTGG 3 cut(s) 693, 965, 1346
Bse21I CCTNAGG 1 cut(s) 1254
Bse3DI GCAATG 2 cut(s) 24, 95
Bse8I GATNNNNATC 1 cut(s) 1481
BseBI CCWGG 2 cut(s) 949, 1625
BseCI ATCGAT 1 cut(s) 151
BseGI GGATG 7 cut(s) 444, 662, 686, 801, 1446, 1482, 1566
BseJI GATNNNNATC 1 cut(s) 1481
BseLI CCNNNNNNNGG 7 cut(s) 38, 696, 850, 871, 1075, 1521, 1576
BseMI GCAATG 2 cut(s) 24, 95
BseMII CTCAG 7 cut(s) 350, 548, 751, 768, 1268, 1581, 1824
BseNI ACTGG 3 cut(s) 693, 965, 1346
BseRI GAGGAG 5 cut(s) 69, 100, 419, 877, 880
BseSI GKGCMC 1 cut(s) 1951
BseXI GCAGC 4 cut(s) 76, 313, 664, 1250
BseYI CCCAGC 2 cut(s) 115, 482
BsgI GTGCAG 1 cut(s) 663
Bsh1285I CGRYCG 1 cut(s) 1231
BshFI GGCC 7 cut(s) 200, 1035, 1079, 1083, 1204, 1259, 1345
BshNI GGYRCC 1 cut(s) 1540
BshTI ACCGGT 1 cut(s) 625
BshVI ATCGAT 1 cut(s) 151
BsiEI CGRYCG 1 cut(s) 1231
BsiHKAI GWGCWC 1 cut(s) 1596
BsiHKCI CYCGRG 3 cut(s) 892, 923, 1595
BsiSI CCGG 7 cut(s) 296, 592, 626, 1032, 1046, 1080, 1292
BslFI GGGAC 3 cut(s) 929, 1498, 1807
BslI CCNNNNNNNGG 7 cut(s) 38, 696, 850, 871, 1075, 1521, 1576
BsmAI GTCTC 9 cut(s) 81, 543, 623, 990, 1327, 1433, 1580, 1592, 1604
BsmBI CGTCTC 2 cut(s) 1433, 1604
BsmFI GGGAC 3 cut(s) 929, 1498, 1807
BsnI GGCC 7 cut(s) 200, 1035, 1079, 1083, 1204, 1259, 1345
Bso31I GGTCTC 1 cut(s) 990
BsoBI CYCGRG 3 cut(s) 892, 923, 1595
Bsp119I TTCGAA 1 cut(s) 1465
Bsp1286I GDGCHC 4 cut(s) 26, 1291, 1596, 1951
Bsp19I CCATGG 1 cut(s) 1087
BspACI CCGC 5 cut(s) 761, 970, 1023, 1205, 1219
BspANI GGCC 7 cut(s) 200, 1035, 1079, 1083, 1204, 1259, 1345
BspCNI CTCAG 7 cut(s) 351, 547, 750, 767, 1267, 1582, 1825
BspDI ATCGAT 1 cut(s) 151
BspHI TCATGA 2 cut(s) 142, 721
BspLI GGNNCC 3 cut(s) 1290, 1478, 1542
BspMAI CTGCAG 3 cut(s) 66, 1141, 1398
BspMI ACCTGC 4 cut(s) 69, 1349, 1401, 1681
BspPI GGATC 5 cut(s) 1369, 1471, 1484, 1853, 1894
BspT104I TTCGAA 1 cut(s) 1465
BspT107I GGYRCC 1 cut(s) 1540
BspTNI GGTCTC 1 cut(s) 990
BsrDI GCAATG 2 cut(s) 24, 95
BsrFI RCCGGY 2 cut(s) 625, 1079
BsrI ACTGG 3 cut(s) 693, 965, 1346
BssAI RCCGGY 2 cut(s) 625, 1079
BssNI GRCGYC 1 cut(s) 1050
BssT1I CCWWGG 4 cut(s) 49, 1087, 1700, 1799
Bst2UI CCWGG 2 cut(s) 949, 1625
Bst4CI ACNGT 8 cut(s) 190, 816, 903, 1122, 1275, 1402, 1411, 1615
Bst6I CTCTTC 1 cut(s) 1021
BstACI GRCGYC 1 cut(s) 1050
BstAPI GCANNNNNTGC 1 cut(s) 1661
BstBAI YACGTR 2 cut(s) 437, 582
BstBI TTCGAA 1 cut(s) 1465
BstC8I GCNNGC 4 cut(s) 356, 1037, 1081, 1317
BstDEI CTNAG 9 cut(s) 128, 359, 534, 737, 754, 793, 1254, 1590, 1833
BstDSI CCRYGG 3 cut(s) 1087, 1199, 1768
BstF5I GGATG 7 cut(s) 444, 662, 686, 801, 1446, 1482, 1566
BstHHI GCGC 2 cut(s) 88, 1767
BstMAI GTCTC 9 cut(s) 81, 543, 623, 990, 1327, 1433, 1580, 1592, 1604
BstMCI CGRYCG 1 cut(s) 1231
BstMWI GCNNNNNNNGC 4 cut(s) 1041, 1089, 1661, 1946
BstNI CCWGG 2 cut(s) 949, 1625
BstNSI RCATGY 1 cut(s) 1763
BstPAI GACNNNNGTC 2 cut(s) 1139, 1170
BstSCI CCNGG 5 cut(s) 295, 947, 1030, 1044, 1623
BstSFI CTRYAG 5 cut(s) 62, 712, 1137, 1394, 1407
BstSLI GKGCMC 1 cut(s) 1951
BstV1I GCAGC 4 cut(s) 76, 313, 664, 1250
BstV2I GAAGAC 1 cut(s) 1166
BstX2I RGATCY 1 cut(s) 1476
BstXI CCANNNNNNTGG 1 cut(s) 1722
BstYI RGATCY 1 cut(s) 1476
Bsu15I ATCGAT 1 cut(s) 151
Bsu36I CCTNAGG 1 cut(s) 1254
BsuI GTATCC 1 cut(s) 1819
BsuRI GGCC 7 cut(s) 200, 1035, 1079, 1083, 1204, 1259, 1345
BsuTUI ATCGAT 1 cut(s) 151
BtgI CCRYGG 3 cut(s) 1087, 1199, 1768
BtsCI GGATG 7 cut(s) 444, 662, 686, 801, 1446, 1482, 1566
BtsI GCAGTG 2 cut(s) 119, 1452
BtsIMutI CAGTG 5 cut(s) 119, 700, 745, 1353, 1452
BveI ACCTGC 4 cut(s) 69, 1349, 1401, 1681
Cac8I GCNNGC 4 cut(s) 356, 1037, 1081, 1317
CaiI CAGNNNCTG 2 cut(s) 1075, 1273
CciI TCATGA 2 cut(s) 142, 721
CfoI GCGC 2 cut(s) 88, 1767
Cfr10I RCCGGY 2 cut(s) 625, 1079
Cfr13I GGNCC 1 cut(s) 100
ClaI ATCGAT 1 cut(s) 151
CseI GACGC 1 cut(s) 1058
Csp6I GTAC 4 cut(s) 293, 729, 877, 1541
CspAI ACCGGT 1 cut(s) 625
CviQI GTAC 4 cut(s) 293, 729, 877, 1541
DdeI CTNAG 9 cut(s) 128, 359, 534, 737, 754, 793, 1254, 1590, 1833
DraIII CACNNNGTG 2 cut(s) 131, 437
EaeI YGGCCR 3 cut(s) 1077, 1081, 1202
Eam1104I CTCTTC 1 cut(s) 1021
EarI CTCTTC 1 cut(s) 1021
Ecl136II GAGCTC 1 cut(s) 1594
Eco130I CCWWGG 4 cut(s) 49, 1087, 1700, 1799
Eco24I GRGCYC 3 cut(s) 26, 1291, 1596
Eco31I GGTCTC 1 cut(s) 990
Eco32I GATATC 1 cut(s) 1183
Eco47I GGWCC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 1594
Eco81I CCTNAGG 1 cut(s) 1254
Eco88I CYCGRG 3 cut(s) 892, 923, 1595
EcoICRI GAGCTC 1 cut(s) 1594
EcoRI GAATTC 1 cut(s) 1461
EcoRII CCWGG 2 cut(s) 947, 1623
EcoRV GATATC 1 cut(s) 1183
EcoT14I CCWWGG 4 cut(s) 49, 1087, 1700, 1799
EcoT22I ATGCAT 1 cut(s) 1761
EcoT38I GRGCYC 3 cut(s) 26, 1291, 1596
ErhI CCWWGG 4 cut(s) 49, 1087, 1700, 1799
Esp3I CGTCTC 2 cut(s) 1433, 1604
FalI AAGNNNNNCTT 4 cut(s) 446, 478, 1664, 1696
FaqI GGGAC 3 cut(s) 929, 1498, 1807
FauI CCCGC 1 cut(s) 1030
FblI GTMKAC 1 cut(s) 1127
Fnu4HI GCNGC 6 cut(s) 65, 327, 678, 1205, 1220, 1239
FokI GGATG 7 cut(s) 431, 669, 673, 788, 1453, 1469, 1553
FriOI GRGCYC 3 cut(s) 26, 1291, 1596
FseI GGCCGGCC 1 cut(s) 1083
Fsp4HI GCNGC 6 cut(s) 65, 327, 678, 1205, 1220, 1239
FspBI CTAG 5 cut(s) 213, 255, 777, 845, 1472
FspI TGCGCA 1 cut(s) 87
GlaI GCGC 2 cut(s) 87, 1766
GluI GCNGC 6 cut(s) 65, 327, 678, 1205, 1220, 1239
GsaI CCCAGC 2 cut(s) 119, 486
GsuI CTGGAG 2 cut(s) 948, 1698
HaeIII GGCC 7 cut(s) 200, 1035, 1079, 1083, 1204, 1259, 1345
HapII CCGG 7 cut(s) 296, 592, 626, 1032, 1046, 1080, 1292
HgaI GACGC 1 cut(s) 1058
HhaI GCGC 2 cut(s) 88, 1767
Hin1I GRCGYC 1 cut(s) 1050
Hin6I GCGC 2 cut(s) 86, 1765
HinP1I GCGC 2 cut(s) 86, 1765
HincII GTYRAC 3 cut(s) 918, 1128, 1150
HindII GTYRAC 3 cut(s) 918, 1128, 1150
HindIII AAGCTT 1 cut(s) 931
HinfI GANTC 8 cut(s) 233, 250, 271, 416, 854, 1072, 1795, 1913
HpaII CCGG 7 cut(s) 296, 592, 626, 1032, 1046, 1080, 1292
HphI GGTGA 8 cut(s) 580, 1090, 1110, 1236, 1373, 1433, 1639, 1832
Hpy166II GTNNAC 7 cut(s) 186, 365, 877, 918, 1128, 1150, 1906
Hpy188I TCNGA 8 cut(s) 262, 351, 634, 859, 990, 1165, 1330, 1834
Hpy188III TCNNGA 7 cut(s) 39, 143, 280, 722, 937, 1178, 1597
Hpy8I GTNNAC 7 cut(s) 186, 365, 877, 918, 1128, 1150, 1906
Hpy99I CGWCG 6 cut(s) 903, 1126, 1129, 1148, 1236, 1330
HpyAV CCTTC 8 cut(s) 169, 295, 316, 434, 719, 1358, 1409, 1719
HpyCH4III ACNGT 8 cut(s) 190, 816, 903, 1122, 1275, 1402, 1411, 1615
HpyCH4IV ACGT 4 cut(s) 367, 436, 581, 783
HpyF10VI GCNNNNNNNGC 4 cut(s) 1041, 1089, 1661, 1946
HpyF3I CTNAG 9 cut(s) 128, 359, 534, 737, 754, 793, 1254, 1590, 1833
HpySE526I ACGT 4 cut(s) 367, 436, 581, 783
Hsp92I GRCGYC 1 cut(s) 1050
HspAI GCGC 2 cut(s) 86, 1765
KpnI GGTACC 1 cut(s) 1544
KroI GCCGGC 1 cut(s) 1079
KroNI GCCGGC 1 cut(s) 1081
LmnI GCTCC 5 cut(s) 351, 491, 967, 1294, 1781
Lsp1109I GCAGC 4 cut(s) 76, 313, 664, 1250
LweI GCATC 2 cut(s) 453, 1250
MaeI CTAG 5 cut(s) 213, 255, 777, 845, 1472
MaeII ACGT 4 cut(s) 367, 436, 581, 783
MaeIII GTNAC 7 cut(s) 56, 516, 763, 810, 1096, 1186, 1489
MboII GAAGA 4 cut(s) 158, 677, 1008, 1166
MflI RGATCY 1 cut(s) 1476
MhlI GDGCHC 4 cut(s) 26, 1291, 1596, 1951
MlyI GAGTC 4 cut(s) 265, 863, 1081, 1789
MmeI TCCRAC 3 cut(s) 513, 1188, 1308
Mph1103I ATGCAT 1 cut(s) 1761
MroNI GCCGGC 1 cut(s) 1079
MroXI GAANNNNTTC 1 cut(s) 639
MseI TTAA 4 cut(s) 975, 1659, 1695, 1957
MspA1I CMGCKG 1 cut(s) 1718
MspI CCGG 7 cut(s) 296, 592, 626, 1032, 1046, 1080, 1292
MspR9I CCNGG 5 cut(s) 297, 949, 1032, 1046, 1625
MvaI CCWGG 2 cut(s) 949, 1625
MwoI GCNNNNNNNGC 4 cut(s) 1041, 1089, 1661, 1946
NaeI GCCGGC 1 cut(s) 1081
NciI CCSGG 3 cut(s) 297, 1032, 1046
NcoI CCATGG 1 cut(s) 1087
NgoMIV GCCGGC 1 cut(s) 1079
NlaIV GGNNCC 3 cut(s) 1290, 1478, 1542
NmuCI GTSAC 2 cut(s) 763, 1096
NsbI TGCGCA 1 cut(s) 87
NsiI ATGCAT 1 cut(s) 1761
NspI RCATGY 1 cut(s) 1763
NspV TTCGAA 1 cut(s) 1465
PaeR7I CTCGAG 3 cut(s) 892, 923, 1595
PagI TCATGA 2 cut(s) 142, 721
PaqCI CACCTGC 1 cut(s) 1349
PcsI WCGNNNNNNNCGW 1 cut(s) 1130
PdiI GCCGGC 1 cut(s) 1081
PdmI GAANNNNTTC 1 cut(s) 639
PfeI GAWTC 4 cut(s) 233, 250, 416, 1913
PflMI CCANNNNNTGG 3 cut(s) 38, 871, 1075
PinAI ACCGGT 1 cut(s) 625
PkrI GCNGC 6 cut(s) 66, 328, 679, 1206, 1221, 1240
Ple19I CGATCG 1 cut(s) 1231
PleI GAGTC 4 cut(s) 265, 862, 1080, 1789
PpsI GAGTC 4 cut(s) 265, 862, 1080, 1789
Ppu21I YACGTR 2 cut(s) 437, 582
PshAI GACNNNNGTC 2 cut(s) 1139, 1170
PshBI ATTAAT 1 cut(s) 975
Psp124BI GAGCTC 1 cut(s) 1596
Psp6I CCWGG 2 cut(s) 947, 1623
PspFI CCCAGC 2 cut(s) 115, 482
PspGI CCWGG 2 cut(s) 947, 1623
PspN4I GGNNCC 3 cut(s) 1290, 1478, 1542
PspPI GGNCC 1 cut(s) 100
PspXI VCTCGAGB 2 cut(s) 892, 923
PstI CTGCAG 3 cut(s) 66, 1141, 1398
PstNI CAGNNNCTG 2 cut(s) 1075, 1273
PsuI RGATCY 1 cut(s) 1476
PvuI CGATCG 1 cut(s) 1231
PvuII CAGCTG 1 cut(s) 1718
RigI GGCCGGCC 1 cut(s) 1083
RsaI GTAC 4 cut(s) 294, 730, 878, 1542
RsaNI GTAC 4 cut(s) 293, 729, 877, 1541
SacI GAGCTC 1 cut(s) 1596
SalI GTCGAC 1 cut(s) 1126
SaqAI TTAA 4 cut(s) 975, 1659, 1695, 1957
SatI GCNGC 6 cut(s) 65, 327, 678, 1205, 1220, 1239
Sau96I GGNCC 1 cut(s) 100
SchI GAGTC 4 cut(s) 265, 863, 1081, 1789
ScrFI CCNGG 5 cut(s) 297, 949, 1032, 1046, 1625
SduI GDGCHC 4 cut(s) 26, 1291, 1596, 1951
SfaNI GCATC 2 cut(s) 453, 1250
SfcI CTRYAG 5 cut(s) 62, 712, 1137, 1394, 1407
Sfr274I CTCGAG 3 cut(s) 892, 923, 1595
SfuI TTCGAA 1 cut(s) 1465
SinI GGWCC 1 cut(s) 100
SlaI CTCGAG 3 cut(s) 892, 923, 1595
SmlI CTYRAG 3 cut(s) 892, 923, 1595
SmoI CTYRAG 3 cut(s) 892, 923, 1595
SsiI CCGC 5 cut(s) 761, 970, 1023, 1205, 1219
SspMI CTAG 5 cut(s) 213, 255, 777, 845, 1472
SstI GAGCTC 1 cut(s) 1596
StyD4I CCNGG 5 cut(s) 295, 947, 1030, 1044, 1623
StyI CCWWGG 4 cut(s) 49, 1087, 1700, 1799
TaaI ACNGT 8 cut(s) 190, 816, 903, 1122, 1275, 1402, 1411, 1615
TaiI ACGT 4 cut(s) 370, 439, 584, 786
TaqII GACCGA 1 cut(s) 1160
TauI GCSGC 2 cut(s) 1207, 1222
TfiI GAWTC 4 cut(s) 233, 250, 416, 1913
Tru1I TTAA 4 cut(s) 975, 1659, 1695, 1957
Tru9I TTAA 4 cut(s) 975, 1659, 1695, 1957
TscAI CASTG 5 cut(s) 126, 700, 745, 1353, 1452
TseFI GTSAC 2 cut(s) 763, 1096
TseI GCWGC 4 cut(s) 64, 326, 677, 1238
Tsp45I GTSAC 2 cut(s) 763, 1096
TspDTI ATGAA 4 cut(s) 159, 416, 738, 790
TspGWI ACGGA 1 cut(s) 1188
TspRI CASTG 5 cut(s) 126, 700, 745, 1353, 1452
Van91I CCANNNNNTGG 3 cut(s) 38, 871, 1075
VpaK11BI GGWCC 1 cut(s) 100
VspI ATTAAT 1 cut(s) 975
XapI RAATTY 5 cut(s) 222, 907, 1461, 1507, 1557
XceI RCATGY 1 cut(s) 1763
XhoI CTCGAG 3 cut(s) 892, 923, 1595
XmiI GTMKAC 1 cut(s) 1127
XmnI GAANNNNTTC 1 cut(s) 639
XspI CTAG 5 cut(s) 213, 255, 777, 845, 1472
Zsp2I ATGCAT 1 cut(s) 1761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.