Rw0G005080

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00200
OG0000591
Physical Location & Seq
Forward (+)
16783 .. 19230
2448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G005080.1

Sequence Viewer

Length: 1665 bp
ATGTCTCATTTCTTCTTCCAGAAGTATTGGGACTTAGTGAGCTCAGAGGTTAGTAGGGTAGTGATTTCTTTTCTAACCAATCAAGAGATGCCTCATGATTTGAATTTTACGTATGTGGTACGGATCCCAAAAGTGAAAGAAGTTCAGCATTTGTCCCAATTGAGACCAATAGCCCTCTGCAATGTGATTTATAAGATAGCCTCCAAGGTGTTAGCCAATAGGCTTAAAGTCTTTCTCCCAGATATTATTTCACCACAGCAGAGTGCGTTTGTCCCGGATCGTTTGATTTCAAACAACACTCTTGTGGCATCAGAGTTAGCTCACTATATGCACAAGTTGCGTAGAGGACAAGAAGGTCTCTCTGCCCTTATTTCTCAATCTATTACCAGTGGTCAATGGCAGGGATTACGAGTTATGTTATATTCTAATGCTTCCCCACATGACTGCTCTCTAATCCGGAACATCTTGAACATTTATGAACGAGCATCAGGCCAACAAATCAACCTTCAAAAGAGTAATGTGGTTTTCAGTGGCAGTGTCCTCCCTCACAGTTGGAGACTACTTCAGAATCCAACTTCCTTAACCTCTAGACTCCTAAAAGCTATTTACTTTCCCAATTGCAACTTCTGGGAAGCAGAGTTGGGAACCACCCCATCCTATGCCTGGCGCAACATACTACAAGGTCGGGATATATTGCAGGCTGGAATTAGACGTCATATTGGAGATGGTAGGTCCACTAATATATGGTATGACCCTTGGTTGTTGAATGAGAACCTCCAACAGTTCTACAATTCACGAGTTCACCTTGTTTCTGATCTCATGTCTTCTCTGGGTACGTGGAATCAATCTTTACTCTGTGAATTGTTTCCTTCTTCAATTGTACAAAAGATTGTAGCATTGCCCCTGAGTTCATGTAACCATGTGGATCAGTGGATTTGGAGTGGTGATAAGAAGGGTCTTTTTACCGTCAAGTCTGCTTATCACTTGGCAAGGGACAGGGTGCTAGGAGAAGCTGCAAATGCACAAAACCCTAGTGCATTGCTTTGGCAGCAACTCTGGAAAGCTCCAGTCCCAGGAAAGGTGAAGATTTGTGTATGGAGGGCAGCATCAAACACTCTTCCGACACGGAGTAGGTTAAGCGAACGAGGTATTGATATAGATACCCAATGCCCCTTCTGTGATGAAGAGATTGAATCTCCCCTTCATGCGTTACGTGACTGTACCCATGCTGCTTCCTTTCTTCAAATGGCTCACATTCCATCCTCAGCTTCTGCACATAGTATTGTGGAAAACCGGAATGCCAAAGTGTGGAATGGTGATGTCAAGCTAGCAACAGAAGCTGTCCCTTTGACCTTGGGTTGGTGGGAGAAATACAAGGCTGCACATACCTTGCAGAGGGTGGTAGGGCAGATTTGTACTGAGTCTTGGAAAAAACCCCCTGTTGGCTTTGTGAAATTAAATGTGGATGTAGATTATGATAACTCCTCGGGTTGCACTGGAATTGGTGGAATATTTCGTGATTTCAATGGTTCCTGTTTGGGTGGATTTCGGCATACTATACCAGTTACCGGTTCTGACAGGACCCGCCCCGAATTCCACCCTGGAATCCGAAGTGGCCCTGCGGGACCCACCTTTAAAGGAGATTTACCAAAAATTTCGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

554

Amino Acids

62.19

Weight (kDa)

9.22

Isoelectric Point (pI)

52.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 321 - 411 5.1e-16 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 192
AasI GACNNNNNNGTC 1 cut(s) 354
AatII GACGTC 1 cut(s) 715
AccB7I CCANNNNNTGG 1 cut(s) 1308
AccIII TCCGGA 1 cut(s) 456
AciI CCGC 2 cut(s) 1585, 1622
AclWI GGATC 4 cut(s) 118, 131, 285, 933
AcsI RAATTY 3 cut(s) 103, 1592, 1653
AcuI CTGAAG 1 cut(s) 548
AcyI GRCGYC 1 cut(s) 712
AfaI GTAC 5 cut(s) 120, 835, 882, 1222, 1417
AfiI CCNNNNNNNGG 8 cut(s) 663, 1073, 1078, 1308, 1359, 1395, 1442, 1568
AgeI ACCGGT 1 cut(s) 1568
AgsI TTSAA 9 cut(s) 103, 291, 469, 509, 766, 876, 1193, 1244, 1525
AjnI CCWGG 3 cut(s) 662, 1072, 1600
AjuI GAANNNNNNNTTGG 2 cut(s) 608, 640
AleI CACNNNNGTG 1 cut(s) 302
AluBI AGCT 8 cut(s) 42, 320, 602, 1013, 1064, 1268, 1327, 1340
AluI AGCT 8 cut(s) 42, 320, 602, 1013, 1064, 1268, 1327, 1340
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 4 cut(s) 9, 157, 362, 550
AlwI GGATC 4 cut(s) 118, 131, 285, 933
AlwNI CAGNNNCTG 2 cut(s) 1271, 1340
Ama87I CYCGRG 1 cut(s) 1486
Aor13HI TCCGGA 1 cut(s) 456
AoxI GGCC 2 cut(s) 490, 1615
ApeKI GCWGC 5 cut(s) 1013, 1048, 1103, 1229, 1379
ApoI RAATTY 3 cut(s) 103, 1592, 1653
AsiGI ACCGGT 1 cut(s) 1568
Asp700I GAANNNNTTC 1 cut(s) 864
AspLEI GCGC 1 cut(s) 669
AspS9I GGNCC 4 cut(s) 732, 1581, 1616, 1625
AsuC2I CCSGG 1 cut(s) 275
AsuHPI GGTGA 5 cut(s) 243, 794, 956, 1093, 1328
AsuNHI GCTAGC 1 cut(s) 1327
AvaI CYCGRG 1 cut(s) 1486
AvaII GGWCC 3 cut(s) 732, 1581, 1625
BamHI GGATCC 1 cut(s) 123
BanII GRGCYC 1 cut(s) 44
BauI CACGAG 1 cut(s) 795
BbsI GAAGAC 1 cut(s) 816
Bbv12I GWGCWC 1 cut(s) 44
BbvCI CCTCAGC 1 cut(s) 1264
BbvI GCAGC 5 cut(s) 1000, 1060, 1115, 1216, 1366
BccI CCATC 3 cut(s) 661, 719, 1267
BciT130I CCWGG 3 cut(s) 664, 1074, 1602
BcnI CCSGG 1 cut(s) 275
BcoDI GTCTC 4 cut(s) 9, 157, 362, 550
BfaI CTAG 4 cut(s) 588, 1004, 1032, 1328
BisI GCNGC 5 cut(s) 1014, 1049, 1104, 1230, 1380
BlsI GCNGC 5 cut(s) 1015, 1050, 1105, 1231, 1381
Bme1390I CCNGG 4 cut(s) 275, 664, 1074, 1602
Bme18I GGWCC 3 cut(s) 732, 1581, 1625
BmeT110I CYCGRG 1 cut(s) 1486
BmgT120I GGNCC 4 cut(s) 732, 1581, 1616, 1625
BmiI GGNNCC 6 cut(s) 125, 646, 1531, 1583, 1626, 1627
BmrFI CCNGG 4 cut(s) 275, 664, 1074, 1602
BmsI GCATC 4 cut(s) 78, 317, 494, 1115
BmtI GCTAGC 1 cut(s) 1331
BpiI GAAGAC 1 cut(s) 816
BpmI CTGGAG 1 cut(s) 1050
Bpu10I CCTNAGC 1 cut(s) 1264
BpuMI CCSGG 1 cut(s) 275
BsaAI YACGTR 3 cut(s) 111, 837, 1214
BsaHI GRCGYC 1 cut(s) 712
BsaI GGTCTC 2 cut(s) 157, 362
BsaJI CCNNGG 6 cut(s) 204, 755, 1072, 1353, 1485, 1600
BsaWI WCCGGW 3 cut(s) 456, 1293, 1568
Bsc4I CCNNNNNNNGG 8 cut(s) 663, 1073, 1078, 1308, 1359, 1395, 1442, 1568
Bse118I RCCGGY 1 cut(s) 1568
Bse1I ACTGG 4 cut(s) 387, 1067, 1501, 1562
Bse3DI GCAATG 3 cut(s) 187, 896, 1037
BseAI TCCGGA 1 cut(s) 456
BseBI CCWGG 3 cut(s) 664, 1074, 1602
BseDI CCNNGG 6 cut(s) 204, 755, 1072, 1353, 1485, 1600
BseGI GGATG 3 cut(s) 653, 1259, 1471
BseLI CCNNNNNNNGG 8 cut(s) 663, 1073, 1078, 1308, 1359, 1395, 1442, 1568
BseMI GCAATG 3 cut(s) 187, 896, 1037
BseMII CTCAG 4 cut(s) 57, 896, 1278, 1410
BseNI ACTGG 4 cut(s) 387, 1067, 1501, 1562
BseRI GAGGAG 1 cut(s) 1474
BseXI GCAGC 5 cut(s) 1000, 1060, 1115, 1216, 1366
BsgI GTGCAG 2 cut(s) 1257, 1365
BshFI GGCC 2 cut(s) 492, 1617
BshTI ACCGGT 1 cut(s) 1568
BsiHKAI GWGCWC 1 cut(s) 44
BsiHKCI CYCGRG 1 cut(s) 1486
BsiSI CCGG 4 cut(s) 275, 457, 1294, 1569
BslFI GGGAC 7 cut(s) 44, 139, 257, 1007, 1055, 1328, 1638
BslI CCNNNNNNNGG 8 cut(s) 663, 1073, 1078, 1308, 1359, 1395, 1442, 1568
BsmAI GTCTC 4 cut(s) 9, 157, 362, 550
BsmFI GGGAC 7 cut(s) 44, 139, 257, 1007, 1055, 1328, 1638
BsmI GAATGC 1 cut(s) 1303
BsnI GGCC 2 cut(s) 492, 1617
Bso31I GGTCTC 2 cut(s) 157, 362
BsoBI CYCGRG 1 cut(s) 1486
Bsp1286I GDGCHC 1 cut(s) 44
Bsp13I TCCGGA 1 cut(s) 456
Bsp1407I TGTACA 1 cut(s) 880
Bsp143I GATC 4 cut(s) 123, 277, 814, 925
BspACI CCGC 2 cut(s) 1585, 1622
BspANI GGCC 2 cut(s) 492, 1617
BspCNI CTCAG 4 cut(s) 56, 897, 1277, 1411
BspEI TCCGGA 1 cut(s) 456
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 6 cut(s) 125, 646, 1531, 1583, 1626, 1627
BspOI GCTAGC 1 cut(s) 1331
BspPI GGATC 4 cut(s) 118, 131, 285, 933
BspTNI GGTCTC 2 cut(s) 157, 362
BsrDI GCAATG 3 cut(s) 187, 896, 1037
BsrFI RCCGGY 1 cut(s) 1568
BsrGI TGTACA 1 cut(s) 880
BsrI ACTGG 4 cut(s) 387, 1067, 1501, 1562
BssAI RCCGGY 1 cut(s) 1568
BssECI CCNNGG 6 cut(s) 204, 755, 1072, 1353, 1485, 1600
BssMI GATC 4 cut(s) 123, 277, 814, 925
BssNI GRCGYC 1 cut(s) 712
BssSI CACGAG 1 cut(s) 795
BssT1I CCWWGG 3 cut(s) 204, 755, 1353
Bst2BI CACGAG 1 cut(s) 795
Bst2UI CCWGG 3 cut(s) 664, 1074, 1602
Bst4CI ACNGT 4 cut(s) 551, 783, 967, 1220
Bst6I CTCTTC 2 cut(s) 1122, 1179
BstACI GRCGYC 1 cut(s) 712
BstAPI GCANNNNNTGC 1 cut(s) 337
BstAUI TGTACA 1 cut(s) 880
BstBAI YACGTR 3 cut(s) 111, 837, 1214
BstC8I GCNNGC 2 cut(s) 699, 1329
BstDEI CTNAG 5 cut(s) 34, 43, 905, 1264, 1419
BstENI CCTNNNNNAGG 1 cut(s) 1393
BstF5I GGATG 3 cut(s) 653, 1259, 1471
BstHHI GCGC 1 cut(s) 669
BstKTI GATC 4 cut(s) 126, 280, 817, 928
BstMAI GTCTC 4 cut(s) 9, 157, 362, 550
BstMBI GATC 4 cut(s) 123, 277, 814, 925
BstMWI GCNNNNNNNGC 4 cut(s) 337, 1019, 1048, 1337
BstNI CCWGG 3 cut(s) 664, 1074, 1602
BstSCI CCNGG 4 cut(s) 273, 662, 1072, 1600
BstSNI TACGTA 1 cut(s) 111
BstV1I GCAGC 5 cut(s) 1000, 1060, 1115, 1216, 1366
BstV2I GAAGAC 1 cut(s) 816
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BsuRI GGCC 2 cut(s) 492, 1617
BtsCI GGATG 3 cut(s) 653, 1259, 1471
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 5 cut(s) 394, 535, 541, 935, 1494
Cac8I GCNNGC 2 cut(s) 699, 1329
CaiI CAGNNNCTG 2 cut(s) 1271, 1340
CciI TCATGA 1 cut(s) 94
CfoI GCGC 1 cut(s) 669
Cfr10I RCCGGY 1 cut(s) 1568
Cfr13I GGNCC 4 cut(s) 732, 1581, 1616, 1625
Csp6I GTAC 5 cut(s) 119, 834, 881, 1221, 1416
CspAI ACCGGT 1 cut(s) 1568
CviAII CATG 7 cut(s) 95, 440, 820, 912, 920, 1205, 1226
CviQI GTAC 5 cut(s) 119, 834, 881, 1221, 1416
DdeI CTNAG 5 cut(s) 34, 43, 905, 1264, 1419
DpnI GATC 4 cut(s) 125, 279, 816, 927
DpnII GATC 4 cut(s) 123, 277, 814, 925
DraI TTTAAA 1 cut(s) 1636
DrdI GACNNNNNNGTC 1 cut(s) 354
DseDI GACNNNNNNGTC 1 cut(s) 354
Eam1104I CTCTTC 2 cut(s) 1122, 1179
EarI CTCTTC 2 cut(s) 1122, 1179
Ecl136II GAGCTC 1 cut(s) 42
Eco105I TACGTA 1 cut(s) 111
Eco130I CCWWGG 3 cut(s) 204, 755, 1353
Eco24I GRGCYC 1 cut(s) 44
Eco31I GGTCTC 2 cut(s) 157, 362
Eco47I GGWCC 3 cut(s) 732, 1581, 1625
Eco53kI GAGCTC 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 548
Eco88I CYCGRG 1 cut(s) 1486
EcoICRI GAGCTC 1 cut(s) 42
EcoNI CCTNNNNNAGG 1 cut(s) 1393
EcoO109I RGGNCCY 2 cut(s) 1581, 1625
EcoRI GAATTC 1 cut(s) 1592
EcoRII CCWGG 3 cut(s) 662, 1072, 1600
EcoT14I CCWWGG 3 cut(s) 204, 755, 1353
EcoT38I GRGCYC 1 cut(s) 44
ErhI CCWWGG 3 cut(s) 204, 755, 1353
FaeI CATG 7 cut(s) 98, 443, 823, 915, 923, 1208, 1229
FaqI GGGAC 7 cut(s) 44, 139, 257, 1007, 1055, 1328, 1638
FatI CATG 7 cut(s) 94, 439, 819, 911, 919, 1204, 1225
FauI CCCGC 2 cut(s) 1592, 1615
Fnu4HI GCNGC 5 cut(s) 1014, 1049, 1104, 1230, 1380
FokI GGATG 3 cut(s) 640, 1246, 1478
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 5 cut(s) 1014, 1049, 1104, 1230, 1380
FspBI CTAG 4 cut(s) 588, 1004, 1032, 1328
GlaI GCGC 1 cut(s) 668
GluI GCNGC 5 cut(s) 1014, 1049, 1104, 1230, 1380
GsuI CTGGAG 1 cut(s) 1050
HaeIII GGCC 2 cut(s) 492, 1617
HapII CCGG 4 cut(s) 275, 457, 1294, 1569
HhaI GCGC 1 cut(s) 669
Hin1I GRCGYC 1 cut(s) 712
Hin1II CATG 7 cut(s) 98, 443, 823, 915, 923, 1208, 1229
Hin6I GCGC 1 cut(s) 667
HinP1I GCGC 1 cut(s) 667
HinfI GANTC 6 cut(s) 568, 591, 841, 1193, 1421, 1605
HpaII CCGG 4 cut(s) 275, 457, 1294, 1569
HphI GGTGA 5 cut(s) 243, 794, 956, 1093, 1328
Hpy166II GTNNAC 2 cut(s) 735, 802
Hpy188I TCNGA 7 cut(s) 46, 313, 567, 814, 1122, 1576, 1610
Hpy8I GTNNAC 2 cut(s) 735, 802
HpyAV CCTTC 6 cut(s) 347, 515, 879, 946, 1183, 1211
HpyCH4III ACNGT 4 cut(s) 551, 783, 967, 1220
HpyCH4IV ACGT 4 cut(s) 110, 712, 836, 1213
HpyF10VI GCNNNNNNNGC 4 cut(s) 337, 1019, 1048, 1337
HpyF3I CTNAG 5 cut(s) 34, 43, 905, 1264, 1419
HpySE526I ACGT 4 cut(s) 110, 712, 836, 1213
Hsp92I GRCGYC 1 cut(s) 712
Hsp92II CATG 7 cut(s) 98, 443, 823, 915, 923, 1208, 1229
HspAI GCGC 1 cut(s) 667
KflI GGGWCCC 1 cut(s) 1625
Kpn2I TCCGGA 1 cut(s) 456
Kzo9I GATC 4 cut(s) 123, 277, 814, 925
LmnI GCTCC 1 cut(s) 1069
Lsp1109I GCAGC 5 cut(s) 1000, 1060, 1115, 1216, 1366
LweI GCATC 4 cut(s) 78, 317, 494, 1115
MaeI CTAG 4 cut(s) 588, 1004, 1032, 1328
MaeII ACGT 4 cut(s) 110, 712, 836, 1213
MaeIII GTNAC 4 cut(s) 914, 1209, 1214, 1564
MalI GATC 4 cut(s) 125, 279, 816, 927
MboI GATC 4 cut(s) 123, 277, 814, 925
MboII GAAGA 8 cut(s) 4, 7, 816, 864, 1096, 1109, 1196, 1232
MfeI CAATTG 3 cut(s) 158, 616, 876
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 44
MlyI GAGTC 2 cut(s) 585, 1430
MmeI TCCRAC 4 cut(s) 533, 596, 802, 1145
MroI TCCGGA 1 cut(s) 456
MroXI GAANNNNTTC 1 cut(s) 864
MseI TTAA 5 cut(s) 225, 581, 1136, 1457, 1635
MslI CAYNNNNRTG 1 cut(s) 302
MspI CCGG 4 cut(s) 275, 457, 1294, 1569
MspR9I CCNGG 4 cut(s) 275, 664, 1074, 1602
MunI CAATTG 3 cut(s) 158, 616, 876
Mva1269I GAATGC 1 cut(s) 1303
MvaI CCWGG 3 cut(s) 664, 1074, 1602
MwoI GCNNNNNNNGC 4 cut(s) 337, 1019, 1048, 1337
NciI CCSGG 1 cut(s) 275
NdeII GATC 4 cut(s) 123, 277, 814, 925
NheI GCTAGC 1 cut(s) 1327
NlaIII CATG 7 cut(s) 98, 443, 823, 915, 923, 1208, 1229
NlaIV GGNNCC 6 cut(s) 125, 646, 1531, 1583, 1626, 1627
NmuCI GTSAC 1 cut(s) 1214
OliI CACNNNNGTG 1 cut(s) 302
PagI TCATGA 1 cut(s) 94
PctI GAATGC 1 cut(s) 1303
PdmI GAANNNNTTC 1 cut(s) 864
PfeI GAWTC 4 cut(s) 568, 841, 1193, 1605
PflMI CCANNNNNTGG 1 cut(s) 1308
PfoI TCCNGGA 1 cut(s) 273
PinAI ACCGGT 1 cut(s) 1568
PkrI GCNGC 5 cut(s) 1015, 1050, 1105, 1231, 1381
PleI GAGTC 2 cut(s) 585, 1429
PpsI GAGTC 2 cut(s) 585, 1429
Ppu21I YACGTR 3 cut(s) 111, 837, 1214
PpuMI RGGWCCY 2 cut(s) 1581, 1625
PsiI TTATAA 1 cut(s) 192
Psp124BI GAGCTC 1 cut(s) 44
Psp5II RGGWCCY 2 cut(s) 1581, 1625
Psp6I CCWGG 3 cut(s) 662, 1072, 1600
PspGI CCWGG 3 cut(s) 662, 1072, 1600
PspN4I GGNNCC 6 cut(s) 125, 646, 1531, 1583, 1626, 1627
PspPI GGNCC 4 cut(s) 732, 1581, 1616, 1625
PspPPI RGGWCCY 2 cut(s) 1581, 1625
PstNI CAGNNNCTG 2 cut(s) 1271, 1340
PsuI RGATCY 1 cut(s) 123
RsaI GTAC 5 cut(s) 120, 835, 882, 1222, 1417
RsaNI GTAC 5 cut(s) 119, 834, 881, 1221, 1416
RseI CAYNNNNRTG 1 cut(s) 302
SacI GAGCTC 1 cut(s) 44
SaqAI TTAA 5 cut(s) 225, 581, 1136, 1457, 1635
SatI GCNGC 5 cut(s) 1014, 1049, 1104, 1230, 1380
Sau3AI GATC 4 cut(s) 123, 277, 814, 925
Sau96I GGNCC 4 cut(s) 732, 1581, 1616, 1625
SchI GAGTC 2 cut(s) 585, 1430
ScrFI CCNGG 4 cut(s) 275, 664, 1074, 1602
SduI GDGCHC 1 cut(s) 44
SfaNI GCATC 4 cut(s) 78, 317, 494, 1115
SinI GGWCC 3 cut(s) 732, 1581, 1625
SmiMI CAYNNNNRTG 1 cut(s) 302
SnaBI TACGTA 1 cut(s) 111
SsiI CCGC 2 cut(s) 1585, 1622
SspI AATATT 1 cut(s) 1512
SspMI CTAG 4 cut(s) 588, 1004, 1032, 1328
SstI GAGCTC 1 cut(s) 44
StyD4I CCNGG 4 cut(s) 273, 662, 1072, 1600
StyI CCWWGG 3 cut(s) 204, 755, 1353
TaaI ACNGT 4 cut(s) 551, 783, 967, 1220
TaiI ACGT 4 cut(s) 113, 715, 839, 1216
TatI WGTACW 2 cut(s) 880, 1415
TfiI GAWTC 4 cut(s) 568, 841, 1193, 1605
Tru1I TTAA 5 cut(s) 225, 581, 1136, 1457, 1635
Tru9I TTAA 5 cut(s) 225, 581, 1136, 1457, 1635
TscAI CASTG 5 cut(s) 394, 535, 541, 935, 1501
TseFI GTSAC 1 cut(s) 1214
TseI GCWGC 5 cut(s) 1013, 1048, 1103, 1229, 1379
Tsp45I GTSAC 1 cut(s) 1214
TspDTI ATGAA 4 cut(s) 492, 900, 1193, 1197
TspGWI ACGGA 2 cut(s) 136, 1141
TspRI CASTG 5 cut(s) 394, 535, 541, 935, 1501
Van91I CCANNNNNTGG 1 cut(s) 1308
VpaK11BI GGWCC 3 cut(s) 732, 1581, 1625
XagI CCTNNNNNAGG 1 cut(s) 1393
XapI RAATTY 3 cut(s) 103, 1592, 1653
XbaI TCTAGA 1 cut(s) 587
XcmI CCANNNNNNNNNTGG 1 cut(s) 660
XmnI GAANNNNTTC 1 cut(s) 864
XspI CTAG 4 cut(s) 588, 1004, 1032, 1328
ZraI GACGTC 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.