RchiOBHm_Chr5g0027511

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000591
Physical Location & Seq
Forward (+)
21467289 .. 21468807
1519 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30706

Sequence Viewer

Length: 210 bp
ATGTTTATGAAGCTCTTGATGTTTGGGCTCCTCTTTGAATCTTGTGGAATTGATGAAGTCTTGTGGTGGAATAGTGAAGAAAATATAGAGAAATGGTTGGAGGTGGGTGGTTCGGTGGGAGAGAGAAAGGGGATGGGTGCGGCGCTGTTTCTGTGTTCTCCCTTTCTGAAGGGTTGGCTGGTATATATATATGCGGTCGTCCCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.89

Weight (kDa)

4.88

Isoelectric Point (pI)

53.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 140, 194
AcuI CTGAAG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 38
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
AspLEI GCGC 1 cut(s) 145
BanII GRGCYC 1 cut(s) 30
BccI CCATC 1 cut(s) 127
BfoI RGCGCY 1 cut(s) 146
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 29
BseGI GGATG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 20
Bsh1285I CGRYCG 1 cut(s) 198
BsiEI CGRYCG 1 cut(s) 198
BslFI GGGAC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 30
BspACI CCGC 2 cut(s) 140, 194
BspLI GGNNCC 1 cut(s) 29
BstF5I GGATG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 1 cut(s) 145
BstMCI CGRYCG 1 cut(s) 198
BtsCI GGATG 1 cut(s) 138
CfoI GCGC 1 cut(s) 145
CviJI RGCY 3 cut(s) 13, 28, 178
CviKI_1 RGCY 3 cut(s) 13, 28, 178
Eco24I GRGCYC 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 30
FaiI YATR 7 cut(s) 8, 86, 184, 186, 188, 190, 192
FaqI GGGAC 1 cut(s) 185
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 145
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 141
GlaI GCGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 141
HaeII RGCGCY 1 cut(s) 146
HhaI GCGC 1 cut(s) 145
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 1 cut(s) 38
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 163
HspAI GCGC 1 cut(s) 143
LmnI GCTCC 1 cut(s) 33
LpnPI CCDG 1 cut(s) 164
MboII GAAGA 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 1 cut(s) 48
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 2 cut(s) 41, 94
NlaIV GGNNCC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 29
SatI GCNGC 1 cut(s) 141
SduI GDGCHC 1 cut(s) 30
SetI ASST 2 cut(s) 15, 105
SgeI CNNG 4 cut(s) 28, 54, 73, 191
Sse9I AATT 1 cut(s) 48
SsiI CCGC 2 cut(s) 140, 194
TasI AATT 1 cut(s) 48
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 23, 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.