Rmu_sc0006119.1_g000010

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006119.1
OG0000591
Physical Location & Seq
Reverse (-)
51106 .. 52020
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006119.1_g000010.1.cds

Sequence Viewer

Length: 759 bp
atgtttgcaaagcaaggctggaggctaatccaaaatccggattccttgatcgataaactcttccaagctctatactttccccaaggtaatttctatgaggctaatcttggctcacaaccttcctacgcttggcggagcattttacaagggcgttacattcttagagctggtatcaaaagacatattgggaatggcttctctaccaatatttggttgaacccatggctaacggatgaagacttacagacctattttactgatagggtcacacttgtggtggatcttttcatctctccagcccagaaacggattcttaatgatgattcatccacacctaacccaagtgccgccctttggcgtcagttatggaaagctccagttctaggcaatgtgaagatttgtgcatggaatgcagcttctaatgttcttcctactcgaagtaggctaaatgaatgtggtatagatgtagatacccaatgcccactttgtgatgaaaaggttgagactcctattcacgcagtttgtgatttcccccatgcaactagtttgattcagggtgctaatcttcctttaatttcagcccctacaagtgttgcaaaatggcccatgttagttcctatgtcaaactctcaaatttttgcttcttccttgatgattttatgggccattgttcccatggccttgggttggctagaggaatataagtgtaacaccccgtactcggaaatactatccttaatttatttgcattgcatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

252

Amino Acids

28.41

Weight (kDa)

6.41

Isoelectric Point (pI)

52.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 210
AccIII TCCGGA 1 cut(s) 37
AciI CCGC 2 cut(s) 133, 348
AclWI GGATC 1 cut(s) 288
AcsI RAATTY 1 cut(s) 633
AcyI GRCGYC 1 cut(s) 358
AdeI CACNNNGTG 1 cut(s) 488
AfaI GTAC 1 cut(s) 719
AfiI CCNNNNNNNGG 8 cut(s) 37, 129, 210, 306, 354, 383, 687, 721
AgsI TTSAA 1 cut(s) 217
AhlI ACTAGT 1 cut(s) 542
AleI CACNNNNGTG 1 cut(s) 272
AluBI AGCT 4 cut(s) 68, 167, 374, 416
AluI AGCT 4 cut(s) 68, 167, 374, 416
Alw26I GTCTC 1 cut(s) 497
AlwI GGATC 1 cut(s) 288
Aor13HI TCCGGA 1 cut(s) 37
AoxI GGCC 3 cut(s) 602, 663, 678
ApeKI GCWGC 1 cut(s) 413
ApoI RAATTY 1 cut(s) 633
Asp700I GAANNNNTTC 1 cut(s) 194
AspS9I GGNCC 2 cut(s) 603, 663
BbsI GAAGAC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 425
BcoDI GTCTC 1 cut(s) 497
BcuI ACTAGT 1 cut(s) 542
BfaI CTAG 3 cut(s) 383, 543, 692
BisI GCNGC 2 cut(s) 348, 414
BlsI GCNGC 2 cut(s) 349, 415
BmgT120I GGNCC 2 cut(s) 603, 663
BpiI GAAGAC 1 cut(s) 243
BpmI CTGGAG 3 cut(s) 40, 279, 360
Bsa29I ATCGAT 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 358
BsaJI CCNNGG 4 cut(s) 82, 221, 675, 681
BsaWI WCCGGW 1 cut(s) 37
Bsc4I CCNNNNNNNGG 8 cut(s) 37, 129, 210, 306, 354, 383, 687, 721
Bse1I ACTGG 1 cut(s) 377
Bse3DI GCAATG 2 cut(s) 394, 748
BseAI TCCGGA 1 cut(s) 37
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 4 cut(s) 82, 221, 675, 681
BseGI GGATG 2 cut(s) 238, 326
BseLI CCNNNNNNNGG 8 cut(s) 37, 129, 210, 306, 354, 383, 687, 721
BseMI GCAATG 2 cut(s) 394, 748
BseNI ACTGG 1 cut(s) 377
BseXI GCAGC 1 cut(s) 425
BshFI GGCC 3 cut(s) 604, 665, 680
BshVI ATCGAT 1 cut(s) 51
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 8 cut(s) 37, 129, 210, 306, 354, 383, 687, 721
BsmAI GTCTC 1 cut(s) 497
BsmI GAATGC 1 cut(s) 415
BsnI GGCC 3 cut(s) 604, 665, 680
Bsp13I TCCGGA 1 cut(s) 37
Bsp143I GATC 2 cut(s) 48, 280
Bsp19I CCATGG 2 cut(s) 221, 675
BspACI CCGC 2 cut(s) 133, 348
BspANI GGCC 3 cut(s) 604, 665, 680
BspDI ATCGAT 1 cut(s) 51
BspEI TCCGGA 1 cut(s) 37
BspPI GGATC 1 cut(s) 288
BsrDI GCAATG 2 cut(s) 394, 748
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 4 cut(s) 82, 221, 675, 681
BssMI GATC 2 cut(s) 48, 280
BssNI GRCGYC 1 cut(s) 358
BssT1I CCWWGG 4 cut(s) 82, 221, 675, 681
Bst6I CTCTTC 1 cut(s) 65
BstACI GRCGYC 1 cut(s) 358
BstAPI GCANNNNNTGC 1 cut(s) 410
BstDEI CTNAG 1 cut(s) 161
BstDSI CCRYGG 2 cut(s) 221, 675
BstF5I GGATG 2 cut(s) 238, 326
BstKTI GATC 2 cut(s) 51, 283
BstMAI GTCTC 1 cut(s) 497
BstMBI GATC 2 cut(s) 48, 280
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstV1I GCAGC 1 cut(s) 425
BstV2I GAAGAC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 280
BstXI CCANNNNNNTGG 1 cut(s) 682
BstYI RGATCY 1 cut(s) 280
Bsu15I ATCGAT 1 cut(s) 51
BsuRI GGCC 3 cut(s) 604, 665, 680
BsuTUI ATCGAT 1 cut(s) 51
BtgI CCRYGG 2 cut(s) 221, 675
BtsCI GGATG 2 cut(s) 238, 326
Cfr13I GGNCC 2 cut(s) 603, 663
ClaI ATCGAT 1 cut(s) 51
CseI GACGC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 718
CviAII CATG 5 cut(s) 222, 405, 536, 607, 676
CviQI GTAC 1 cut(s) 718
DdeI CTNAG 1 cut(s) 161
DpnI GATC 2 cut(s) 50, 282
DpnII GATC 2 cut(s) 48, 280
DraIII CACNNNGTG 1 cut(s) 488
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
EciI GGCGGA 1 cut(s) 148
Eco130I CCWWGG 4 cut(s) 82, 221, 675, 681
EcoT14I CCWWGG 4 cut(s) 82, 221, 675, 681
ErhI CCWWGG 4 cut(s) 82, 221, 675, 681
FaeI CATG 5 cut(s) 225, 408, 539, 610, 679
FatI CATG 5 cut(s) 221, 404, 535, 606, 675
Fnu4HI GCNGC 2 cut(s) 348, 414
FokI GGATG 2 cut(s) 245, 313
Fsp4HI GCNGC 2 cut(s) 348, 414
FspBI CTAG 3 cut(s) 383, 543, 692
GluI GCNGC 2 cut(s) 348, 414
GsuI CTGGAG 3 cut(s) 40, 279, 360
HaeIII GGCC 3 cut(s) 604, 665, 680
HapII CCGG 1 cut(s) 38
HgaI GACGC 1 cut(s) 347
Hin1I GRCGYC 1 cut(s) 358
Hin1II CATG 5 cut(s) 225, 408, 539, 610, 679
HinfI GANTC 5 cut(s) 41, 310, 323, 505, 550
HpaII CCGG 1 cut(s) 38
Hpy188I TCNGA 1 cut(s) 724
Hpy188III TCNNGA 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 129
HpyCH4V TGCA 7 cut(s) 8, 404, 413, 539, 596, 748, 753
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpyF3I CTNAG 1 cut(s) 161
Hsp92I GRCGYC 1 cut(s) 358
Hsp92II CATG 5 cut(s) 225, 408, 539, 610, 679
Kpn2I TCCGGA 1 cut(s) 37
Kzo9I GATC 2 cut(s) 48, 280
LmnI GCTCC 2 cut(s) 135, 379
LpnPI CCDG 7 cut(s) 4, 51, 153, 309, 314, 390, 539
Lsp1109I GCAGC 1 cut(s) 425
MaeI CTAG 3 cut(s) 383, 543, 692
MaeIII GTNAC 3 cut(s) 152, 265, 707
MalI GATC 2 cut(s) 50, 282
MboI GATC 2 cut(s) 48, 280
MboII GAAGA 6 cut(s) 52, 248, 406, 419, 557, 636
MflI RGATCY 1 cut(s) 280
MluCI AATT 4 cut(s) 88, 573, 633, 738
MlyI GAGTC 1 cut(s) 499
MnlI CCTC 3 cut(s) 15, 91, 688
MroI TCCGGA 1 cut(s) 37
MroXI GAANNNNTTC 1 cut(s) 194
MseI TTAA 3 cut(s) 315, 572, 737
MslI CAYNNNNRTG 1 cut(s) 272
MspI CCGG 1 cut(s) 38
Mva1269I GAATGC 1 cut(s) 415
MwoI GCNNNNNNNGC 1 cut(s) 410
NcoI CCATGG 2 cut(s) 221, 675
NdeII GATC 2 cut(s) 48, 280
NlaIII CATG 5 cut(s) 225, 408, 539, 610, 679
NmuCI GTSAC 1 cut(s) 265
OliI CACNNNNGTG 1 cut(s) 272
PctI GAATGC 1 cut(s) 415
PdmI GAANNNNTTC 1 cut(s) 194
PfeI GAWTC 4 cut(s) 41, 310, 323, 550
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 2 cut(s) 349, 415
PleI GAGTC 1 cut(s) 499
PpsI GAGTC 1 cut(s) 499
PspPI GGNCC 2 cut(s) 603, 663
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 1 cut(s) 719
RsaNI GTAC 1 cut(s) 718
RseI CAYNNNNRTG 1 cut(s) 272
SaqAI TTAA 3 cut(s) 315, 572, 737
SatI GCNGC 2 cut(s) 348, 414
Sau3AI GATC 2 cut(s) 48, 280
Sau96I GGNCC 2 cut(s) 603, 663
SchI GAGTC 1 cut(s) 499
SetI ASST 9 cut(s) 70, 88, 121, 169, 251, 337, 376, 418, 501
SmiMI CAYNNNNRTG 1 cut(s) 272
SpeI ACTAGT 1 cut(s) 542
Sse9I AATT 4 cut(s) 88, 573, 633, 738
SsiI CCGC 2 cut(s) 133, 348
SspI AATATT 1 cut(s) 208
SspMI CTAG 3 cut(s) 383, 543, 692
StyI CCWWGG 4 cut(s) 82, 221, 675, 681
TaqI TCGA 2 cut(s) 51, 436
TasI AATT 4 cut(s) 88, 573, 633, 738
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 4 cut(s) 41, 310, 323, 550
Tru1I TTAA 3 cut(s) 315, 572, 737
Tru9I TTAA 3 cut(s) 315, 572, 737
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 1 cut(s) 413
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 5 cut(s) 249, 277, 315, 465, 507
TspGWI ACGGA 2 cut(s) 245, 322
Van91I CCANNNNNTGG 1 cut(s) 210
XapI RAATTY 1 cut(s) 633
XcmI CCANNNNNNNNNTGG 1 cut(s) 673
XmnI GAANNNNTTC 1 cut(s) 194
XspI CTAG 3 cut(s) 383, 543, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.