Rorug01G0118500

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000591
Physical Location & Seq
Forward (+)
20749547 .. 20751982
2436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0118500.1

Sequence Viewer

Length: 2016 bp
ATGGGAATAAGTGGGATAAGGAGCCTCTCCCTGTGTGGGTGGGTGTCAATTGTAGCCTTTTTTGTTCTTGGCTTATCTACCGCTTCTTCCTCCGGCCAGATCCACACAACAAGTGTTCTGGGCGATAACGTTACGTGTGGGACTTCTTCCTGCGGCGACGTCCACAACATAAGCTTCCCTTTTCGACTAAAACATGATCCACAGGACTGTGGCCTGAATGGCCTCCAAGAGTTCACTTTGGAATGTCACAACAACATCCCAGTGCTGCGCCTATTTTCTCACGAGTACTCCGTGAAGGCCATTGACTACGATAACACGACAATCCGAGTGGTAGATCCTGGCCTTGAGAAGAACAACTGCGCTTCCCTTCCTCGTTTTCCTTTGGCCTATTATAATTTCACTTATGATTCAAGTGACGGAATATTGTGGCCATCTTATTCAGATTCTGTAACTTTCTTGAAGTGTGCAAATCCAGTGAATTCTTCTCTGTATGTGAACACTGCACCCTGTATTAAATCCAAAGGGTATGATTATTGCATTCGAGGCCATATGTCCCTGGAAGATGTGGAGGATGGGTGCAGTATAGATTGGATGGGTATGATCACTTCGATGCACGGAAAGGACCGAAACATTTCCTATCAAGATATACACAATGAACTGGTGTATGGCTTTGAGCTGAGCTGGAGTAATTTGTACATTGTCGATTGCCACGATCAATGGAATTACACTTATCGGGACGGATTAGAAGCATGTTATCCGCGCAGCATCCCAGGTTTCTTTCGACTTGGTTGGACGGTATTAATCGGTAAGGGCCATTTCTTTCGACTTGGTTGGACGGTGTTAATCGACCGCGGTCATCTTTACTTGGATCTTATCGTTGCTGCCAGTGTTGTAGTTATCGTTGCTGCCAGTGTTGTAGGGGTAAAACTTATATTTGGAGGTCCATTTGTGATTGCACTTCTGATATACAAGTGGCGAAGAAGACATTGGTCAACCTACAACACTATAGAAGATTTTCTGCATAGTGACAATTTTATGCCTATAAGGTACTCTTACTCCAACATTAAGAAAATGTCTGATGGATTCAAAGATAAGTTGGGCGAAGGGGGCTATGGGTCTGTATTTAAAGGCAAATTGCGAAGTGGCCACTTTGGAGCCATTAAGTTGTTAGGCAAGTCTAATGCTAATGGGGAAGCTTTCACGAGTGAAGTAGCTACTATTGGAAGGATTCATCATGTTAATGTGGTGCAGCTTGTTGGTTACTGTGTTGAGGGTTCAAAGCGCGCTTTAGTATATGATTTCATGCCAAATGGGTCTCTTGATAAATACATTTACTCTAAAGAAGGATCCATCACTTTAAGTTATAAGAAAATATATGAGATTGCAGTTGGAGTAGCTCAGGGTATTGAATATTTGCATCAAGGTTGTGAAATGCAAATTCTACATTTTGATATCAAGCCTCATAATATTCTACTTGATGAGAATTTTATCCCAAAGATTTCTGACTTTGGGCTAGCGAAACTATATCCAGTGAATAACAGCATCGTCTCTTCAATGGCAGCAAGAGGCACTATGGGATACATTGCTCCCGAGTTGTTTTATAAAAATATTGGTGGGGTTTCATACAAAGCTGATGTCTACAGTTTTGGAATGTTGTTGATGGAAATGGCAAGCAGAAGGAAAAATCTGAATGCACTTGTAGATCATTCAAGCCAACTTTACTTCCCCTCATGGGTGCATGATCAATATAATGATGGTAAGGACCTGGAGATTGGCGATGCTACAGCAGAGGAAAACAAATTAATTAAAAAAATGATTGTAACTGCCTTGTGGTGTATTCAAATGAAACCAAGTGATCGACCTTCAATGAAGAGAGTCACACAGATGCTCGTAGGAGATGTTGAATACCTAGAAATGCCGCCAAAGCCTTCTCTATGCCCACAACCAATGCCCGTAAGCAATTTGATTCCAGGATGTTCAAATGTGGAGCTAACATGTACTCTTTCAGCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

671

Amino Acids

75.07

Weight (kDa)

6.6

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 46 - 112 1.3e-16 Wall-associated receptor kinase galacturonan-binding
PK_Tyr_Ser-Thr PF07714 362 - 630 6.8e-42 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 363 - 628 1.1e-42 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 393, 1365, 1602
AatII GACGTC 1 cut(s) 162
AccI GTMKAC 1 cut(s) 1638
AccII CGCG 3 cut(s) 760, 852, 1284
AciI CCGC 6 cut(s) 81, 153, 758, 850, 852, 1919
AclI AACGTT 1 cut(s) 129
AclWI GGATC 6 cut(s) 94, 191, 329, 876, 1341, 1354
AcoI YGGCCR 3 cut(s) 94, 428, 1144
AcsI RAATTY 3 cut(s) 478, 1437, 1483
AcyI GRCGYC 1 cut(s) 159
AfaI GTAC 4 cut(s) 287, 695, 1049, 1999
AfiI CCNNNNNNNGG 2 cut(s) 36, 1732
AflIII ACRYGT 2 cut(s) 134, 1994
AjnI CCWGG 5 cut(s) 337, 555, 769, 1764, 1969
AjuI GAANNNNNNNTTGG 2 cut(s) 970, 1002
Alw26I GTCTC 2 cut(s) 1320, 1552
AlwI GGATC 6 cut(s) 94, 191, 329, 876, 1341, 1354
AlwNI CAGNNNCTG 1 cut(s) 446
Ama87I CYCGRG 1 cut(s) 1589
ApeKI GCWGC 6 cut(s) 265, 762, 881, 905, 1249, 1559
ApoI RAATTY 3 cut(s) 478, 1437, 1483
ArsI GACNNNNNNTTYG 2 cut(s) 1620, 1652
AseI ATTAAT 2 cut(s) 800, 1802
Asp700I GAANNNNTTC 2 cut(s) 631, 1014
AspLEI GCGC 5 cut(s) 270, 362, 762, 1284, 1286
AspS9I GGNCC 4 cut(s) 622, 811, 941, 1762
AsuNHI GCTAGC 1 cut(s) 1513
AvaI CYCGRG 1 cut(s) 1589
AvaII GGWCC 3 cut(s) 622, 941, 1762
BalI TGGCCA 2 cut(s) 430, 1146
BamHI GGATCC 1 cut(s) 1346
BarI GAAGNNNNNNTAC 2 cut(s) 589, 621
BauI CACGAG 2 cut(s) 281, 1201
BbsI GAAGAC 1 cut(s) 988
BbvI GCAGC 6 cut(s) 252, 774, 868, 892, 1261, 1571
BccI CCATC 7 cut(s) 439, 566, 586, 1073, 1358, 1654, 1748
BciT130I CCWGG 5 cut(s) 339, 557, 771, 1766, 1971
BciVI GTATCC 1 cut(s) 1571
BclI TGATCA 2 cut(s) 600, 1741
BcoDI GTCTC 2 cut(s) 1320, 1552
BfaI CTAG 3 cut(s) 1514, 1910, 2010
BfmI CTRYAG 3 cut(s) 1005, 1639, 1782
BfuI GTATCC 1 cut(s) 1571
BglI GCCNNNNNGGC 1 cut(s) 219
BisI GCNGC 8 cut(s) 154, 266, 763, 882, 906, 1250, 1560, 1919
BlpI GCTNAGC 1 cut(s) 677
BlsI GCNGC 8 cut(s) 155, 267, 764, 883, 907, 1251, 1561, 1920
BmcAI AGTACT 1 cut(s) 287
Bme1390I CCNGG 5 cut(s) 339, 557, 771, 1766, 1971
Bme18I GGWCC 3 cut(s) 622, 941, 1762
BmeT110I CYCGRG 1 cut(s) 1589
BmgT120I GGNCC 4 cut(s) 622, 811, 941, 1762
BmiI GGNNCC 3 cut(s) 23, 1156, 1348
BmrFI CCNGG 5 cut(s) 339, 557, 771, 1766, 1971
BmrI ACTGGG 1 cut(s) 254
BmsI GCATC 6 cut(s) 600, 774, 1426, 1551, 1768, 1875
BmtI GCTAGC 1 cut(s) 1517
BmuI ACTGGG 1 cut(s) 254
BoxI GACNNNNGTC 2 cut(s) 852, 988
BpiI GAAGAC 1 cut(s) 988
BpmI CTGGAG 2 cut(s) 703, 1787
Bpu10I CCTNAGC 1 cut(s) 1398
Bpu1102I GCTNAGC 1 cut(s) 677
BpuEI CTTGAG 1 cut(s) 365
BsaAI YACGTR 1 cut(s) 135
BsaHI GRCGYC 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 1320
BsaJI CCNNGG 3 cut(s) 555, 769, 850
BsaXI ACNNNNNCTCC 6 cut(s) 272, 302, 560, 590, 1040, 1070
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 1732
Bse1I ACTGG 6 cut(s) 260, 473, 663, 885, 909, 1529
Bse3DI GCAATG 1 cut(s) 1581
BseBI CCWGG 5 cut(s) 339, 557, 771, 1766, 1971
BseDI CCNNGG 3 cut(s) 555, 769, 850
BseGI GGATG 5 cut(s) 255, 577, 597, 765, 1979
BseLI CCNNNNNNNGG 2 cut(s) 36, 1732
BseMI GCAATG 1 cut(s) 1581
BseMII CTCAG 2 cut(s) 668, 1412
BseNI ACTGG 6 cut(s) 260, 473, 663, 885, 909, 1529
BsePI GCGCGC 1 cut(s) 1282
BseXI GCAGC 6 cut(s) 252, 774, 868, 892, 1261, 1571
BsgI GTGCAG 3 cut(s) 486, 598, 1268
Bsh1236I CGCG 3 cut(s) 760, 852, 1284
Bsh1285I CGRYCG 1 cut(s) 850
BsiEI CGRYCG 1 cut(s) 850
BsiHKCI CYCGRG 1 cut(s) 1589
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 3 cut(s) 154, 538, 749
BslI CCNNNNNNNGG 2 cut(s) 36, 1732
BsmAI GTCTC 2 cut(s) 1320, 1552
BsmBI CGTCTC 1 cut(s) 1552
BsmFI GGGAC 3 cut(s) 154, 538, 749
BsmI GAATGC 2 cut(s) 537, 1696
Bso31I GGTCTC 1 cut(s) 1320
BsoBI CYCGRG 1 cut(s) 1589
Bsp1407I TGTACA 1 cut(s) 693
Bsp1720I GCTNAGC 1 cut(s) 677
BspACI CCGC 6 cut(s) 81, 153, 758, 850, 852, 1919
BspCNI CTCAG 2 cut(s) 669, 1411
BspFNI CGCG 3 cut(s) 760, 852, 1284
BspLI GGNNCC 3 cut(s) 23, 1156, 1348
BspOI GCTAGC 1 cut(s) 1517
BspPI GGATC 6 cut(s) 94, 191, 329, 876, 1341, 1354
BspTNI GGTCTC 1 cut(s) 1320
BsrDI GCAATG 1 cut(s) 1581
BsrGI TGTACA 1 cut(s) 693
BsrI ACTGG 6 cut(s) 260, 473, 663, 885, 909, 1529
BssECI CCNNGG 3 cut(s) 555, 769, 850
BssHII GCGCGC 1 cut(s) 1282
BssNI GRCGYC 1 cut(s) 159
BssSI CACGAG 2 cut(s) 281, 1201
Bst2BI CACGAG 2 cut(s) 281, 1201
Bst2UI CCWGG 5 cut(s) 339, 557, 771, 1766, 1971
Bst4CI ACNGT 5 cut(s) 209, 796, 838, 1265, 1643
Bst6I CTCTTC 2 cut(s) 1555, 1865
BstACI GRCGYC 1 cut(s) 159
BstAUI TGTACA 1 cut(s) 693
BstBAI YACGTR 1 cut(s) 135
BstC8I GCNNGC 3 cut(s) 1284, 1515, 1672
BstDEI CTNAG 2 cut(s) 677, 1398
BstDSI CCRYGG 1 cut(s) 850
BstF5I GGATG 5 cut(s) 255, 577, 597, 765, 1979
BstFNI CGCG 3 cut(s) 760, 852, 1284
BstHHI GCGC 5 cut(s) 270, 362, 762, 1284, 1286
BstMAI GTCTC 2 cut(s) 1320, 1552
BstMCI CGRYCG 1 cut(s) 850
BstMWI GCNNNNNNNGC 4 cut(s) 219, 543, 1107, 1924
BstNI CCWGG 5 cut(s) 339, 557, 771, 1766, 1971
BstNSI RCATGY 2 cut(s) 753, 1998
BstPAI GACNNNNGTC 2 cut(s) 852, 988
BstSCI CCNGG 5 cut(s) 337, 555, 769, 1764, 1969
BstSFI CTRYAG 3 cut(s) 1005, 1639, 1782
BstUI CGCG 3 cut(s) 760, 852, 1284
BstV1I GCAGC 6 cut(s) 252, 774, 868, 892, 1261, 1571
BstV2I GAAGAC 1 cut(s) 988
BstX2I RGATCY 4 cut(s) 99, 334, 868, 1346
BstYI RGATCY 4 cut(s) 99, 334, 868, 1346
BsuI GTATCC 1 cut(s) 1571
BtgI CCRYGG 1 cut(s) 850
BtgZI GCGATG 1 cut(s) 1791
BtsCI GGATG 5 cut(s) 255, 577, 597, 765, 1979
BtsI GCAGTG 1 cut(s) 498
BtsIMutI CAGTG 6 cut(s) 267, 480, 498, 892, 916, 1536
Cac8I GCNNGC 3 cut(s) 1284, 1515, 1672
CaiI CAGNNNCTG 1 cut(s) 446
CfoI GCGC 5 cut(s) 270, 362, 762, 1284, 1286
Cfr13I GGNCC 4 cut(s) 622, 811, 941, 1762
Cfr42I CCGCGG 1 cut(s) 853
Csp6I GTAC 4 cut(s) 286, 694, 1048, 1998
CspCI CAANNNNNGTGG 2 cut(s) 309, 344
CviAII CATG 7 cut(s) 194, 750, 1235, 1303, 1731, 1739, 1995
CviQI GTAC 4 cut(s) 286, 694, 1048, 1998
DdeI CTNAG 2 cut(s) 677, 1398
DraI TTTAAA 1 cut(s) 1126
EaeI YGGCCR 3 cut(s) 94, 428, 1144
Eam1104I CTCTTC 2 cut(s) 1555, 1865
EarI CTCTTC 2 cut(s) 1555, 1865
Eco31I GGTCTC 1 cut(s) 1320
Eco32I GATATC 1 cut(s) 1453
Eco47I GGWCC 3 cut(s) 622, 941, 1762
Eco88I CYCGRG 1 cut(s) 1589
EcoO109I RGGNCCY 1 cut(s) 1762
EcoRI GAATTC 1 cut(s) 478
EcoRII CCWGG 5 cut(s) 337, 555, 769, 1764, 1969
EcoRV GATATC 1 cut(s) 1453
Esp3I CGTCTC 1 cut(s) 1552
FaeI CATG 7 cut(s) 197, 753, 1238, 1306, 1734, 1742, 1998
FalI AAGNNNNNCTT 4 cut(s) 163, 195, 1036, 1068
FaqI GGGAC 3 cut(s) 154, 538, 749
FatI CATG 7 cut(s) 193, 749, 1234, 1302, 1730, 1738, 1994
FauNDI CATATG 1 cut(s) 549
FbaI TGATCA 2 cut(s) 600, 1741
FblI GTMKAC 1 cut(s) 1638
Fnu4HI GCNGC 8 cut(s) 154, 266, 763, 882, 906, 1250, 1560, 1919
FokI GGATG 5 cut(s) 242, 584, 604, 752, 1986
Fsp4HI GCNGC 8 cut(s) 154, 266, 763, 882, 906, 1250, 1560, 1919
FspBI CTAG 3 cut(s) 1514, 1910, 2010
GlaI GCGC 5 cut(s) 269, 361, 761, 1283, 1285
GluI GCNGC 8 cut(s) 154, 266, 763, 882, 906, 1250, 1560, 1919
GsuI CTGGAG 2 cut(s) 703, 1787
HapII CCGG 1 cut(s) 93
HhaI GCGC 5 cut(s) 270, 362, 762, 1284, 1286
Hin1I GRCGYC 1 cut(s) 159
Hin1II CATG 7 cut(s) 197, 753, 1238, 1306, 1734, 1742, 1998
Hin6I GCGC 5 cut(s) 268, 360, 760, 1282, 1284
HinP1I GCGC 5 cut(s) 268, 360, 760, 1282, 1284
HincII GTYRAC 1 cut(s) 993
HindII GTYRAC 1 cut(s) 993
HindIII AAGCTT 2 cut(s) 172, 1194
HinfI GANTC 6 cut(s) 407, 443, 1083, 1228, 1875, 1966
HpaII CCGG 1 cut(s) 93
Hpy166II GTNNAC 5 cut(s) 163, 234, 496, 993, 1639
Hpy188I TCNGA 6 cut(s) 326, 442, 963, 1078, 1504, 1689
Hpy188III TCNNGA 7 cut(s) 281, 457, 641, 734, 1201, 1319, 1589
Hpy8I GTNNAC 5 cut(s) 163, 234, 496, 993, 1639
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 8 cut(s) 289, 377, 1097, 1218, 1337, 1671, 1872, 1938
HpyCH4III ACNGT 5 cut(s) 209, 796, 838, 1265, 1643
HpyCH4IV ACGT 3 cut(s) 129, 134, 159
HpyF10VI GCNNNNNNNGC 4 cut(s) 219, 543, 1107, 1924
HpyF3I CTNAG 2 cut(s) 677, 1398
HpySE526I ACGT 3 cut(s) 129, 134, 159
Hsp92I GRCGYC 1 cut(s) 159
Hsp92II CATG 7 cut(s) 197, 753, 1238, 1306, 1734, 1742, 1998
HspAI GCGC 5 cut(s) 268, 360, 760, 1282, 1284
Ksp22I TGATCA 2 cut(s) 600, 1741
KspI CCGCGG 1 cut(s) 853
LmnI GCTCC 4 cut(s) 21, 1154, 1591, 1987
Lsp1109I GCAGC 6 cut(s) 252, 774, 868, 892, 1261, 1571
LweI GCATC 6 cut(s) 600, 774, 1426, 1551, 1768, 1875
MaeI CTAG 3 cut(s) 1514, 1910, 2010
MaeII ACGT 3 cut(s) 129, 134, 159
MaeIII GTNAC 8 cut(s) 130, 245, 413, 448, 1025, 1259, 1819, 1876
MfeI CAATTG 1 cut(s) 48
MflI RGATCY 4 cut(s) 99, 334, 868, 1346
MlsI TGGCCA 2 cut(s) 430, 1146
MluNI TGGCCA 2 cut(s) 430, 1146
MlyI GAGTC 1 cut(s) 1884
MmeI TCCRAC 4 cut(s) 770, 812, 1083, 1369
Mox20I TGGCCA 2 cut(s) 430, 1146
MroXI GAANNNNTTC 2 cut(s) 631, 1014
MscI TGGCCA 2 cut(s) 430, 1146
MslI CAYNNNNRTG 4 cut(s) 260, 608, 1239, 1883
Msp20I TGGCCA 2 cut(s) 430, 1146
MspA1I CMGCKG 1 cut(s) 852
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 5 cut(s) 339, 557, 771, 1766, 1971
MunI CAATTG 1 cut(s) 48
Mva1269I GAATGC 2 cut(s) 537, 1696
MvaI CCWGG 5 cut(s) 339, 557, 771, 1766, 1971
MvnI CGCG 3 cut(s) 760, 852, 1284
MwoI GCNNNNNNNGC 4 cut(s) 219, 543, 1107, 1924
NdeI CATATG 1 cut(s) 549
NheI GCTAGC 1 cut(s) 1513
NlaIII CATG 7 cut(s) 197, 753, 1238, 1306, 1734, 1742, 1998
NlaIV GGNNCC 3 cut(s) 23, 1156, 1348
NmuCI GTSAC 4 cut(s) 245, 413, 1025, 1876
NspI RCATGY 2 cut(s) 753, 1998
PacI TTAATTAA 1 cut(s) 1806
PauI GCGCGC 1 cut(s) 1282
PciI ACATGT 1 cut(s) 1994
PcsI WCGNNNNNNNCGW 2 cut(s) 288, 708
PctI GAATGC 2 cut(s) 537, 1696
PdmI GAANNNNTTC 2 cut(s) 631, 1014
PfeI GAWTC 5 cut(s) 407, 443, 1083, 1228, 1966
PfoI TCCNGGA 1 cut(s) 1969
PkrI GCNGC 8 cut(s) 155, 267, 764, 883, 907, 1251, 1561, 1920
PleI GAGTC 1 cut(s) 1883
PpsI GAGTC 1 cut(s) 1883
Ppu21I YACGTR 1 cut(s) 135
PpuMI RGGWCCY 1 cut(s) 1762
PscI ACATGT 1 cut(s) 1994
PshAI GACNNNNGTC 2 cut(s) 852, 988
PshBI ATTAAT 2 cut(s) 800, 1802
PsiI TTATAA 3 cut(s) 393, 1365, 1602
Psp1406I AACGTT 1 cut(s) 129
Psp5II RGGWCCY 1 cut(s) 1762
Psp6I CCWGG 5 cut(s) 337, 555, 769, 1764, 1969
PspGI CCWGG 5 cut(s) 337, 555, 769, 1764, 1969
PspN4I GGNNCC 3 cut(s) 23, 1156, 1348
PspPI GGNCC 4 cut(s) 622, 811, 941, 1762
PspPPI RGGWCCY 1 cut(s) 1762
PstNI CAGNNNCTG 1 cut(s) 446
PsuI RGATCY 4 cut(s) 99, 334, 868, 1346
PteI GCGCGC 1 cut(s) 1282
RsaI GTAC 4 cut(s) 287, 695, 1049, 1999
RsaNI GTAC 4 cut(s) 286, 694, 1048, 1998
RseI CAYNNNNRTG 4 cut(s) 260, 608, 1239, 1883
SacII CCGCGG 1 cut(s) 853
SatI GCNGC 8 cut(s) 154, 266, 763, 882, 906, 1250, 1560, 1919
Sau96I GGNCC 4 cut(s) 622, 811, 941, 1762
ScaI AGTACT 1 cut(s) 287
SchI GAGTC 1 cut(s) 1884
ScrFI CCNGG 5 cut(s) 339, 557, 771, 1766, 1971
SfaNI GCATC 6 cut(s) 600, 774, 1426, 1551, 1768, 1875
SfcI CTRYAG 3 cut(s) 1005, 1639, 1782
SfiI GGCCNNNNNGGCC 1 cut(s) 219
Sfr303I CCGCGG 1 cut(s) 853
SgrBI CCGCGG 1 cut(s) 853
SinI GGWCC 3 cut(s) 622, 941, 1762
SmiMI CAYNNNNRTG 4 cut(s) 260, 608, 1239, 1883
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SsiI CCGC 6 cut(s) 81, 153, 758, 850, 852, 1919
SspI AATATT 4 cut(s) 423, 1412, 1468, 1609
SspMI CTAG 3 cut(s) 1514, 1910, 2010
StyD4I CCNGG 5 cut(s) 337, 555, 769, 1764, 1969
TaaI ACNGT 5 cut(s) 209, 796, 838, 1265, 1643
TaiI ACGT 3 cut(s) 132, 137, 162
TaqI TCGA 8 cut(s) 184, 541, 608, 702, 781, 823, 846, 1858
TaqII GACCGA 1 cut(s) 639
TatI WGTACW 3 cut(s) 285, 693, 1997
TauI GCSGC 2 cut(s) 156, 1921
TfiI GAWTC 5 cut(s) 407, 443, 1083, 1228, 1966
TscAI CASTG 6 cut(s) 267, 480, 505, 892, 916, 1536
TseFI GTSAC 4 cut(s) 245, 413, 1025, 1876
TseI GCWGC 6 cut(s) 265, 762, 881, 905, 1249, 1559
Tsp45I GTSAC 4 cut(s) 245, 413, 1025, 1876
TspDTI ATGAA 6 cut(s) 669, 1220, 1291, 1611, 1859, 1883
TspGWI ACGGA 4 cut(s) 280, 432, 630, 753
TspRI CASTG 6 cut(s) 267, 480, 505, 892, 916, 1536
VpaK11BI GGWCC 3 cut(s) 622, 941, 1762
VspI ATTAAT 2 cut(s) 800, 1802
XapI RAATTY 3 cut(s) 478, 1437, 1483
XceI RCATGY 2 cut(s) 753, 1998
XmiI GTMKAC 1 cut(s) 1638
XmnI GAANNNNTTC 2 cut(s) 631, 1014
XspI CTAG 3 cut(s) 1514, 1910, 2010
ZraI GACGTC 1 cut(s) 160
ZrmI AGTACT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.