FvH4_3g18961

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000591
Physical Location & Seq
Reverse (-)
12194504 .. 12195669
1166 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18961.t1

Sequence Viewer

Length: 1080 bp
ATGTTAGCTATACAGGGGTGGATGTTACTTCAAAATCCGACGTCCTTGCCGGGAAGATTGTTGAAGGCTATATATTTTTCTCACAATAACTTTTGGGAAGCTGAACTAGGTAATGCTCAATCTTATGCTTGGCAAAGTATTATTGATGGGAGGGATGTTCTGAGACAAGGTGTTAGTAGGCAAATTGGAGATGGACAGCGTACCAACATCTGGTATGATCCTTGGCTGAAAGGGGAGGAACTGTTACAATTTCGGTCTCCTAGTTTCAATAAGGTGTCGGACCTTCTTTTAAGCCCAGGAGTGTGGAATGTTGGTGTTTTGCAGGAACTCTTTCCTGCTTCTATTGTGAGTAAGATTCTGGCGCTTCTAATTAGTTCCAGAGAGTACCAGGATAGATGGATTTGGAGTGAAGATAAACTAGGTAAGTTTTCCGTTAAAACTGCTTACCATTTGGCTAGAAAACATGTTCTTGACCATGAGCATGTTCCGAATCCGAACTCTTTACTTTGGAACAAAATTTGGAAGGCTAAGGTTTCTGGTAAAGTCAAGGTGTGTGCTTGGAAGCTGCCTCTAATATTCTTCCCACTAGAAGTAGGCTTAGTGAACAGGGTGTGGATATTGACACCCACTGCCCTTTCTGTGAGGAGGAGGTGGAGTCACCTATTATGCTCTGAGAATTGTTTCCATGCAACTGAGTACCTTCAACTAGCACAAGTTCCATTGCTGCCGAACAATACCTCGGAGTCAAAAGGTTTGAGAGGGCGACTGGGCGAGGTTAAACAAGCCTCTAAGATAGTGTCTTTGGCTTTGGGTTGGTGGGAGAACTATAAAAAGGCTAGAAGCTCTTTAATTGAACCAAGGATTGTTTTTCGGTCTAGATGGACGAAACCCTCAATTGGGTTTGTAAAGCTTAATGTTGATGCTGCCTTCGATCCAAATTCTGAAAGATCAGGGTTAGGAGGAGTTTTCCGTGATCATGAAGGGTTTTGTTTGGGAGCTTTCACCAAGTTCATTGTGTCTGCCAGCTCTCCTCAACATAGTGAACTCCTTGCAGTTCTTGAAGGTGTTGGATGGGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

360

Amino Acids

40.76

Weight (kDa)

9.63

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 305 - 356 9.6e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 44
AccB7I CCANNNNNTGG 1 cut(s) 210
AclWI GGATC 2 cut(s) 212, 926
AcsI RAATTY 2 cut(s) 516, 937
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 3 cut(s) 202, 386, 698
AfiI CCNNNNNNNGG 3 cut(s) 210, 896, 897
AflIII ACRYGT 1 cut(s) 463
AgsI TTSAA 6 cut(s) 32, 64, 268, 704, 854, 1061
AjnI CCWGG 2 cut(s) 295, 387
AluBI AGCT 7 cut(s) 8, 101, 565, 843, 910, 998, 1026
AluI AGCT 7 cut(s) 8, 101, 565, 843, 910, 998, 1026
Alw26I GTCTC 2 cut(s) 157, 261
AlwI GGATC 2 cut(s) 212, 926
ApeKI GCWGC 3 cut(s) 565, 724, 923
ApoI RAATTY 2 cut(s) 516, 937
Asp700I GAANNNNTTC 2 cut(s) 330, 680
AspLEI GCGC 1 cut(s) 364
AspS9I GGNCC 1 cut(s) 280
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 2 cut(s) 650, 994
AvaII GGWCC 1 cut(s) 280
BbvI GCAGC 3 cut(s) 552, 711, 910
BccI CCATC 5 cut(s) 140, 185, 390, 873, 1065
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BciT130I CCWGG 2 cut(s) 297, 389
BclI TGATCA 1 cut(s) 973
BcnI CCSGG 1 cut(s) 51
BcoDI GTCTC 2 cut(s) 157, 261
BfaI CTAG 8 cut(s) 107, 261, 419, 456, 587, 707, 837, 876
BfoI RGCGCY 1 cut(s) 365
BisI GCNGC 3 cut(s) 566, 725, 924
BlsI GCNGC 3 cut(s) 567, 726, 925
Bme1390I CCNGG 3 cut(s) 51, 297, 389
Bme18I GGWCC 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 280
BmrFI CCNGG 3 cut(s) 51, 297, 389
BmrI ACTGGG 1 cut(s) 776
BmsI GCATC 1 cut(s) 910
BmuI ACTGGG 1 cut(s) 776
Bpu10I CCTNAGC 1 cut(s) 528
BpuMI CCSGG 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 4 cut(s) 221, 295, 738, 857
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 640, 670
Bsc4I CCNNNNNNNGG 3 cut(s) 210, 896, 897
Bse1I ACTGG 1 cut(s) 771
Bse3DI GCAATG 1 cut(s) 719
BseBI CCWGG 2 cut(s) 297, 389
BseDI CCNNGG 4 cut(s) 221, 295, 738, 857
BseGI GGATG 3 cut(s) 27, 160, 1076
BseLI CCNNNNNNNGG 3 cut(s) 210, 896, 897
BseMI GCAATG 1 cut(s) 719
BseMII CTCAG 3 cut(s) 152, 663, 684
BseNI ACTGG 1 cut(s) 771
BseRI GAGGAG 4 cut(s) 658, 661, 975, 1020
BseXI GCAGC 3 cut(s) 552, 711, 910
BsiSI CCGG 1 cut(s) 50
BslI CCNNNNNNNGG 3 cut(s) 210, 896, 897
BsmAI GTCTC 2 cut(s) 157, 261
Bso31I GGTCTC 1 cut(s) 261
Bsp143I GATC 4 cut(s) 217, 931, 947, 973
BspCNI CTCAG 3 cut(s) 153, 664, 685
BspHI TCATGA 1 cut(s) 976
BspPI GGATC 2 cut(s) 212, 926
BspTNI GGTCTC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 719
BsrI ACTGG 1 cut(s) 771
BssECI CCNNGG 4 cut(s) 221, 295, 738, 857
BssMI GATC 4 cut(s) 217, 931, 947, 973
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 2 cut(s) 221, 857
Bst2UI CCWGG 2 cut(s) 297, 389
Bst4CI ACNGT 1 cut(s) 243
BstACI GRCGYC 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 1024
BstDEI CTNAG 6 cut(s) 161, 528, 598, 672, 693, 789
BstF5I GGATG 3 cut(s) 27, 160, 1076
BstH2I RGCGCY 1 cut(s) 365
BstHHI GCGC 1 cut(s) 364
BstKTI GATC 4 cut(s) 220, 934, 950, 976
BstMAI GTCTC 2 cut(s) 157, 261
BstMBI GATC 4 cut(s) 217, 931, 947, 973
BstNI CCWGG 2 cut(s) 297, 389
BstNSI RCATGY 2 cut(s) 467, 485
BstSCI CCNGG 3 cut(s) 49, 295, 387
BstV1I GCAGC 3 cut(s) 552, 711, 910
BstXI CCANNNNNNTGG 1 cut(s) 303
BtsCI GGATG 3 cut(s) 27, 160, 1076
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 1 cut(s) 627
Cac8I GCNNGC 1 cut(s) 1024
CciI TCATGA 1 cut(s) 976
CfoI GCGC 1 cut(s) 364
Cfr13I GGNCC 1 cut(s) 280
Csp6I GTAC 3 cut(s) 201, 385, 697
CviAII CATG 5 cut(s) 464, 476, 482, 686, 977
CviQI GTAC 3 cut(s) 201, 385, 697
DdeI CTNAG 6 cut(s) 161, 528, 598, 672, 693, 789
DpnI GATC 4 cut(s) 219, 933, 949, 975
DpnII GATC 4 cut(s) 217, 931, 947, 973
Eco130I CCWWGG 2 cut(s) 221, 857
Eco31I GGTCTC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 280
EcoRII CCWGG 2 cut(s) 295, 387
EcoT14I CCWWGG 2 cut(s) 221, 857
ErhI CCWWGG 2 cut(s) 221, 857
FaeI CATG 5 cut(s) 467, 479, 485, 689, 980
FatI CATG 5 cut(s) 463, 475, 481, 685, 976
FbaI TGATCA 1 cut(s) 973
Fnu4HI GCNGC 3 cut(s) 566, 725, 924
FokI GGATG 2 cut(s) 34, 167
Fsp4HI GCNGC 3 cut(s) 566, 725, 924
FspBI CTAG 8 cut(s) 107, 261, 419, 456, 587, 707, 837, 876
GlaI GCGC 1 cut(s) 363
GluI GCNGC 3 cut(s) 566, 725, 924
HaeII RGCGCY 1 cut(s) 365
HapII CCGG 1 cut(s) 50
HhaI GCGC 1 cut(s) 364
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 5 cut(s) 467, 479, 485, 689, 980
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HindIII AAGCTT 1 cut(s) 908
HinfI GANTC 4 cut(s) 355, 490, 655, 743
HpaII CCGG 1 cut(s) 50
HphI GGTGA 2 cut(s) 650, 994
Hpy166II GTNNAC 2 cut(s) 604, 1043
Hpy188I TCNGA 8 cut(s) 39, 162, 280, 489, 495, 673, 742, 943
Hpy188III TCNNGA 5 cut(s) 378, 470, 876, 977, 1058
Hpy8I GTNNAC 2 cut(s) 604, 1043
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 7 cut(s) 58, 293, 517, 710, 937, 974, 1055
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 3 cut(s) 322, 689, 1052
HpyF3I CTNAG 6 cut(s) 161, 528, 598, 672, 693, 789
HpySE526I ACGT 1 cut(s) 41
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 5 cut(s) 467, 479, 485, 689, 980
HspAI GCGC 1 cut(s) 362
Ksp22I TGATCA 1 cut(s) 973
Kzo9I GATC 4 cut(s) 217, 931, 947, 973
LmnI GCTCC 1 cut(s) 995
Lsp1109I GCAGC 3 cut(s) 552, 711, 910
LweI GCATC 1 cut(s) 910
MaeI CTAG 8 cut(s) 107, 261, 419, 456, 587, 707, 837, 876
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 3 cut(s) 24, 243, 656
MalI GATC 4 cut(s) 219, 933, 949, 975
MboI GATC 4 cut(s) 217, 931, 947, 973
MboII GAAGA 3 cut(s) 66, 422, 571
MfeI CAATTG 1 cut(s) 894
MluCI AATT 8 cut(s) 183, 248, 369, 516, 676, 849, 894, 937
MlyI GAGTC 2 cut(s) 664, 752
MmeI TCCRAC 3 cut(s) 62, 258, 1048
MroXI GAANNNNTTC 2 cut(s) 330, 680
MseI TTAA 5 cut(s) 290, 435, 777, 848, 912
MslI CAYNNNNRTG 1 cut(s) 480
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 3 cut(s) 51, 297, 389
MunI CAATTG 1 cut(s) 894
MvaI CCWGG 2 cut(s) 297, 389
NciI CCSGG 1 cut(s) 51
NdeII GATC 4 cut(s) 217, 931, 947, 973
NlaIII CATG 5 cut(s) 467, 479, 485, 689, 980
NmuCI GTSAC 1 cut(s) 656
NspI RCATGY 2 cut(s) 467, 485
PagI TCATGA 1 cut(s) 976
PciI ACATGT 1 cut(s) 463
PdmI GAANNNNTTC 2 cut(s) 330, 680
PfeI GAWTC 2 cut(s) 355, 490
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 3 cut(s) 567, 726, 925
PleI GAGTC 2 cut(s) 663, 751
PpsI GAGTC 2 cut(s) 663, 751
PscI ACATGT 1 cut(s) 463
Psp6I CCWGG 2 cut(s) 295, 387
PspGI CCWGG 2 cut(s) 295, 387
PspPI GGNCC 1 cut(s) 280
RsaI GTAC 3 cut(s) 202, 386, 698
RsaNI GTAC 3 cut(s) 201, 385, 697
RseI CAYNNNNRTG 1 cut(s) 480
SaqAI TTAA 5 cut(s) 290, 435, 777, 848, 912
SatI GCNGC 3 cut(s) 566, 725, 924
Sau3AI GATC 4 cut(s) 217, 931, 947, 973
Sau96I GGNCC 1 cut(s) 280
SchI GAGTC 2 cut(s) 664, 752
ScrFI CCNGG 3 cut(s) 51, 297, 389
SfaNI GCATC 1 cut(s) 910
SinI GGWCC 1 cut(s) 280
SmiMI CAYNNNNRTG 1 cut(s) 480
Sse9I AATT 8 cut(s) 183, 248, 369, 516, 676, 849, 894, 937
SspI AATATT 1 cut(s) 576
SspMI CTAG 8 cut(s) 107, 261, 419, 456, 587, 707, 837, 876
StyD4I CCNGG 3 cut(s) 49, 295, 387
StyI CCWWGG 2 cut(s) 221, 857
TaaI ACNGT 1 cut(s) 243
TaiI ACGT 1 cut(s) 44
TaqI TCGA 1 cut(s) 930
TaqII GACCGA 2 cut(s) 243, 861
TasI AATT 8 cut(s) 183, 248, 369, 516, 676, 849, 894, 937
TfiI GAWTC 2 cut(s) 355, 490
Tru1I TTAA 5 cut(s) 290, 435, 777, 848, 912
Tru9I TTAA 5 cut(s) 290, 435, 777, 848, 912
TscAI CASTG 1 cut(s) 634
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 3 cut(s) 565, 724, 923
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 2 cut(s) 993, 1000
TspGWI ACGGA 2 cut(s) 421, 959
TspRI CASTG 1 cut(s) 634
Van91I CCANNNNNTGG 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 280
XapI RAATTY 2 cut(s) 516, 937
XbaI TCTAGA 1 cut(s) 875
XceI RCATGY 2 cut(s) 467, 485
XmnI GAANNNNTTC 2 cut(s) 330, 680
XspI CTAG 8 cut(s) 107, 261, 419, 456, 587, 707, 837, 876
ZraI GACGTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.