FvH4_5g34871

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000591
Physical Location & Seq
Reverse (-)
25523119 .. 25523739
621 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g34871.t1

Sequence Viewer

Length: 495 bp
ATGCCTTTTTGTGATGAAGAAATCGAATCTCATATCCATGCTCTGAGAGACTGCGCCCATGCATCATCCTTCCTTCAGCTTGCTCACATACCTGCATGTACGACTGCAGAATCAGTGTCTCAATGGTTGGTAGCCTCGTACTCTCATTCTCCTGTTACTTTATCTACCCTTCTCATGATAATATGGGCTACATGGCATAATCAAAATGCAAAAAAGCCTCGTATGGGGTATGTAAAATTTAATGTGGATGCCGCCTATCAAAATGTTGTTGGAAGAGCAGGTATAGGTGGAGTATTTCGTGATCATGATGGAGGATGTCTAGGAGTGTTCTCAAAGATGTTGTCAGCAATTAGTTCAGCGAGACATGGAGAGCTACTAGCTCTTATCGAAGGTGGCTGTCTAGCAATTACACACAACCTCTTTCCAGTGGTGGTTGAGTTCGACTGCCAAGTCTTGGTGGATGCGATAAGGAATGGAACCCTTGATAATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

165

Amino Acids

17.82

Weight (kDa)

5.93

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 81 - 160 1.3e-13 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 449
Acc36I ACCTGC 2 cut(s) 100, 269
AccB7I CCANNNNNTGG 1 cut(s) 454
AciI CCGC 1 cut(s) 252
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 2 cut(s) 100, 140
AfiI CCNNNNNNNGG 2 cut(s) 224, 454
AluBI AGCT 3 cut(s) 79, 373, 380
AluI AGCT 3 cut(s) 79, 373, 380
Alw26I GTCTC 3 cut(s) 42, 123, 355
ApoI RAATTY 1 cut(s) 236
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspLEI GCGC 1 cut(s) 56
BccI CCATC 1 cut(s) 302
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 3 cut(s) 42, 123, 355
BfaI CTAG 3 cut(s) 320, 377, 401
BfmI CTRYAG 1 cut(s) 105
BfuAI ACCTGC 2 cut(s) 100, 269
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 478
BmsI GCATC 3 cut(s) 71, 238, 451
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 454
Bse1I ACTGG 1 cut(s) 425
BseGI GGATG 4 cut(s) 65, 253, 320, 466
BseLI CCNNNNNNNGG 2 cut(s) 224, 454
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 425
BslI CCNNNNNNNGG 2 cut(s) 224, 454
BsmAI GTCTC 3 cut(s) 42, 123, 355
Bsp143I GATC 1 cut(s) 301
BspACI CCGC 1 cut(s) 252
BspCNI CTCAG 1 cut(s) 36
BspHI TCATGA 2 cut(s) 174, 304
BspLI GGNNCC 1 cut(s) 478
BspMAI CTGCAG 1 cut(s) 109
BspMI ACCTGC 2 cut(s) 100, 269
BspQI GCTCTTC 1 cut(s) 268
BsrI ACTGG 1 cut(s) 425
BssMI GATC 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 44, 492
BstF5I GGATG 4 cut(s) 65, 253, 320, 466
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 1 cut(s) 304
BstMAI GTCTC 3 cut(s) 42, 123, 355
BstMBI GATC 1 cut(s) 301
BstNSI RCATGY 1 cut(s) 99
BstSFI CTRYAG 1 cut(s) 105
BtsCI GGATG 4 cut(s) 65, 253, 320, 466
BtsIMutI CAGTG 2 cut(s) 120, 432
BveI ACCTGC 2 cut(s) 100, 269
Cac8I GCNNGC 1 cut(s) 81
CciI TCATGA 2 cut(s) 174, 304
CfoI GCGC 1 cut(s) 56
Csp6I GTAC 2 cut(s) 99, 139
CviAII CATG 7 cut(s) 38, 59, 96, 175, 192, 305, 365
CviJI RGCY 7 cut(s) 79, 134, 188, 217, 373, 380, 396
CviKI_1 RGCY 7 cut(s) 79, 134, 188, 217, 373, 380, 396
CviQI GTAC 2 cut(s) 99, 139
DdeI CTNAG 2 cut(s) 44, 492
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
DrdI GACNNNNNNGTC 1 cut(s) 449
DseDI GACNNNNNNGTC 1 cut(s) 449
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 59
EcoT22I ATGCAT 1 cut(s) 64
FaeI CATG 7 cut(s) 41, 62, 99, 178, 195, 308, 368
FatI CATG 7 cut(s) 37, 58, 95, 174, 191, 304, 364
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 4 cut(s) 52, 260, 327, 473
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 3 cut(s) 320, 377, 401
GlaI GCGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 252
HhaI GCGC 1 cut(s) 56
Hin1II CATG 7 cut(s) 41, 62, 99, 178, 195, 308, 368
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HinfI GANTC 2 cut(s) 26, 110
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 3 cut(s) 175, 299, 305
HpyAV CCTTC 4 cut(s) 79, 83, 179, 383
HpyCH4V TGCA 4 cut(s) 62, 95, 107, 209
HpyF3I CTNAG 2 cut(s) 44, 492
Hsp92II CATG 7 cut(s) 41, 62, 99, 178, 195, 308, 368
HspAI GCGC 1 cut(s) 54
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 1 cut(s) 301
LguI GCTCTTC 1 cut(s) 268
LpnPI CCDG 4 cut(s) 105, 165, 264, 438
LweI GCATC 3 cut(s) 71, 238, 451
MaeI CTAG 3 cut(s) 320, 377, 401
MaeIII GTNAC 1 cut(s) 154
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 2 cut(s) 29, 285
MluCI AATT 4 cut(s) 236, 348, 405, 487
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 4 cut(s) 145, 228, 305, 428
Mph1103I ATGCAT 1 cut(s) 64
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 36
NdeII GATC 1 cut(s) 301
NlaIII CATG 7 cut(s) 41, 62, 99, 178, 195, 308, 368
NlaIV GGNNCC 1 cut(s) 478
NsiI ATGCAT 1 cut(s) 64
NspI RCATGY 1 cut(s) 99
PagI TCATGA 2 cut(s) 174, 304
PciSI GCTCTTC 1 cut(s) 268
PfeI GAWTC 2 cut(s) 26, 110
PflMI CCANNNNNTGG 1 cut(s) 454
PkrI GCNGC 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 478
PstI CTGCAG 1 cut(s) 109
RsaI GTAC 2 cut(s) 100, 140
RsaNI GTAC 2 cut(s) 99, 139
RseI CAYNNNNRTG 1 cut(s) 36
SapI GCTCTTC 1 cut(s) 268
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 1 cut(s) 301
SetI ASST 8 cut(s) 81, 94, 283, 289, 375, 382, 394, 420
SfaNI GCATC 3 cut(s) 71, 238, 451
SfcI CTRYAG 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 36
Sse9I AATT 4 cut(s) 236, 348, 405, 487
SsiI CCGC 1 cut(s) 252
SspMI CTAG 3 cut(s) 320, 377, 401
TaqI TCGA 3 cut(s) 24, 387, 441
TasI AATT 4 cut(s) 236, 348, 405, 487
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 2 cut(s) 26, 110
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 2 cut(s) 120, 432
TspDTI ATGAA 1 cut(s) 30
TspRI CASTG 2 cut(s) 120, 432
Van91I CCANNNNNTGG 1 cut(s) 454
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 99
XspI CTAG 3 cut(s) 320, 377, 401
Zsp2I ATGCAT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.