RchiOBHm_Chr1g0320221

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000591
Physical Location & Seq
Forward (+)
7872213 .. 7872713
501 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55039

Sequence Viewer

Length: 423 bp
ATGCTACGTACAGCATCTAGTGGGTTAGGAGACACTTTAAGAGACGCAGAAGGCTCATTTTTAGGAGGCTTCATGCACTTTGTGGAGGATGTCCATAGTGCTAAACAGGCTGAACTTTTAGCTTGTCTCTATGGAGCCAGAATAGCGCTTGAAAGAGGCTGGAGACCTTTGATCATTGAGTCAGATTGCTTGGAAGTTGTGACGGAGGTTGACTCCTCTAGTGACTGTTTATCTATGCTGGGGGTCCTAGTGGAGGATCTGAGAGAGGTCTTGGTGCTTTTGTCTTCAGCCAGGTTGGTTCATACTAGGAGGCCAGCTAATCAAGTGGCTCACATTTTAGCACAGGAGGCTTATCAGTTACAGGATGTTTCCATTTTTTTTGGATGCTGCTCCCCCGTCTGTGGAGGATGCTTTAAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

140

Amino Acids

15.25

Weight (kDa)

4.95

Isoelectric Point (pI)

58.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 5 - 117 1.6e-20 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 264
AcuI CTGAAG 1 cut(s) 270
AdeI CACNNNGTG 1 cut(s) 82
AfaI GTAC 1 cut(s) 10
AfeI AGCGCT 1 cut(s) 147
AfiI CCNNNNNNNGG 2 cut(s) 253, 401
AgsI TTSAA 1 cut(s) 152
AjnI CCWGG 1 cut(s) 290
AluBI AGCT 2 cut(s) 122, 317
AluI AGCT 2 cut(s) 122, 317
Alw26I GTCTC 4 cut(s) 24, 36, 131, 157
AlwI GGATC 1 cut(s) 264
Aor51HI AGCGCT 1 cut(s) 147
AoxI GGCC 1 cut(s) 311
ApeKI GCWGC 1 cut(s) 387
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 244
AvaII GGWCC 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 276
BbvI GCAGC 1 cut(s) 374
BciT130I CCWGG 1 cut(s) 292
BclI TGATCA 1 cut(s) 171
BcoDI GTCTC 4 cut(s) 24, 36, 131, 157
BfaI CTAG 4 cut(s) 18, 219, 248, 306
BfoI RGCGCY 1 cut(s) 149
BisI GCNGC 1 cut(s) 388
BlsI GCNGC 1 cut(s) 389
Bme1390I CCNGG 1 cut(s) 292
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 2 cut(s) 136, 245
BmrFI CCNGG 1 cut(s) 292
BmsI GCATC 3 cut(s) 23, 374, 398
BpiI GAAGAC 1 cut(s) 276
BplI GAGNNNNNCTC 2 cut(s) 197, 229
BpmI CTGGAG 1 cut(s) 181
BsaAI YACGTR 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 157
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 401
BseBI CCWGG 1 cut(s) 292
BseGI GGATG 4 cut(s) 94, 370, 389, 413
BseLI CCNNNNNNNGG 2 cut(s) 253, 401
BseMII CTCAG 1 cut(s) 251
BseRI GAGGAG 1 cut(s) 205
BseXI GCAGC 1 cut(s) 374
BseYI CCCAGC 1 cut(s) 238
BshFI GGCC 1 cut(s) 313
BslI CCNNNNNNNGG 2 cut(s) 253, 401
BsmAI GTCTC 4 cut(s) 24, 36, 131, 157
BsmBI CGTCTC 1 cut(s) 36
BsnI GGCC 1 cut(s) 313
Bso31I GGTCTC 1 cut(s) 157
Bsp143I GATC 2 cut(s) 171, 256
BspANI GGCC 1 cut(s) 313
BspCNI CTCAG 1 cut(s) 252
BspLI GGNNCC 2 cut(s) 136, 245
BspPI GGATC 1 cut(s) 264
BspTNI GGTCTC 1 cut(s) 157
BssMI GATC 2 cut(s) 171, 256
Bst2UI CCWGG 1 cut(s) 292
Bst4CI ACNGT 1 cut(s) 227
BstBAI YACGTR 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 1 cut(s) 260
BstENI CCTNNNNNAGG 1 cut(s) 251
BstF5I GGATG 4 cut(s) 94, 370, 389, 413
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 2 cut(s) 174, 259
BstMAI GTCTC 4 cut(s) 24, 36, 131, 157
BstMBI GATC 2 cut(s) 171, 256
BstMWI GCNNNNNNNGC 3 cut(s) 107, 143, 347
BstNI CCWGG 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 290
BstSNI TACGTA 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 374
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 1 cut(s) 313
BtsCI GGATG 4 cut(s) 94, 370, 389, 413
Cac8I GCNNGC 1 cut(s) 315
CfoI GCGC 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 244
CseI GACGC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 9
CviAII CATG 1 cut(s) 73
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 1 cut(s) 260
DpnI GATC 2 cut(s) 173, 258
DpnII GATC 2 cut(s) 171, 256
DraI TTTAAA 1 cut(s) 415
DraIII CACNNNGTG 1 cut(s) 82
Eco105I TACGTA 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 244
Eco47III AGCGCT 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 270
EcoNI CCTNNNNNAGG 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 290
Esp3I CGTCTC 1 cut(s) 36
FaeI CATG 1 cut(s) 76
FaiI YATR 6 cut(s) 74, 96, 132, 236, 303, 421
FatI CATG 1 cut(s) 72
FbaI TGATCA 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 388
FokI GGATG 3 cut(s) 101, 377, 396
Fsp4HI GCNGC 1 cut(s) 388
FspBI CTAG 4 cut(s) 18, 219, 248, 306
GlaI GCGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 388
GsaI CCCAGC 1 cut(s) 242
GsuI CTGGAG 1 cut(s) 181
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 1 cut(s) 313
HgaI GACGC 1 cut(s) 53
HhaI GCGC 1 cut(s) 148
Hin1II CATG 1 cut(s) 76
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 2 cut(s) 179, 212
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 2 cut(s) 184, 261
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 143, 347
HpyF3I CTNAG 1 cut(s) 260
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 1 cut(s) 76
HspAI GCGC 1 cut(s) 146
Ksp22I TGATCA 1 cut(s) 171
Kzo9I GATC 2 cut(s) 171, 256
LmnI GCTCC 2 cut(s) 134, 395
LpnPI CCDG 9 cut(s) 92, 145, 151, 224, 277, 304, 327, 329, 347
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 3 cut(s) 23, 374, 398
MaeI CTAG 4 cut(s) 18, 219, 248, 306
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 3 cut(s) 199, 221, 357
MalI GATC 2 cut(s) 173, 258
MboI GATC 2 cut(s) 171, 256
MboII GAAGA 1 cut(s) 276
MflI RGATCY 1 cut(s) 256
MlyI GAGTC 2 cut(s) 188, 206
MseI TTAA 2 cut(s) 38, 414
MspR9I CCNGG 1 cut(s) 292
MvaI CCWGG 1 cut(s) 292
MwoI GCNNNNNNNGC 3 cut(s) 107, 143, 347
NdeII GATC 2 cut(s) 171, 256
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 2 cut(s) 136, 245
NmuCI GTSAC 2 cut(s) 199, 221
PkrI GCNGC 1 cut(s) 389
PleI GAGTC 2 cut(s) 187, 206
PpsI GAGTC 2 cut(s) 187, 206
Ppu21I YACGTR 1 cut(s) 8
PpuMI RGGWCCY 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 290
PspFI CCCAGC 1 cut(s) 238
PspGI CCWGG 1 cut(s) 290
PspN4I GGNNCC 2 cut(s) 136, 245
PspPI GGNCC 1 cut(s) 244
PspPPI RGGWCCY 1 cut(s) 244
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
SaqAI TTAA 2 cut(s) 38, 414
SatI GCNGC 1 cut(s) 388
Sau3AI GATC 2 cut(s) 171, 256
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 2 cut(s) 188, 206
ScrFI CCNGG 1 cut(s) 292
SetI ASST 7 cut(s) 10, 124, 169, 210, 270, 296, 319
SfaNI GCATC 3 cut(s) 23, 374, 398
SinI GGWCC 1 cut(s) 244
SnaBI TACGTA 1 cut(s) 8
SspMI CTAG 4 cut(s) 18, 219, 248, 306
StyD4I CCNGG 1 cut(s) 290
TaaI ACNGT 1 cut(s) 227
TaiI ACGT 1 cut(s) 10
Tru1I TTAA 2 cut(s) 38, 414
Tru9I TTAA 2 cut(s) 38, 414
TseFI GTSAC 2 cut(s) 199, 221
TseI GCWGC 1 cut(s) 387
Tsp45I GTSAC 2 cut(s) 199, 221
TspDTI ATGAA 2 cut(s) 61, 290
TspGWI ACGGA 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 244
XagI CCTNNNNNAGG 1 cut(s) 251
XspI CTAG 4 cut(s) 18, 219, 248, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.