FvH4_6g21812

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000591
Physical Location & Seq
Reverse (-)
15416822 .. 15417412
591 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21812.t1

Sequence Viewer

Length: 591 bp
ATGTTCCGAATCCAAGCTCTTTACTATGGAATAAAATTTGGAAGGCTAAGGTTCCTGGTAAAGTCAAGGTGTGTGCTTGGAAAGCTGCCTCTAATATTCTTCCCACAAGGAGTAGGCTTAGTGAACGGGGTATGGATATTGACACCCAATGCCCTTTTTGTGAGGAGGCTTAGTGAACGGGGTATGGATATGATTCTATGGGCAATATGGCGTAATAGGAATCAGAAGGTTTGGGAGGGTGAGGTTAAACAAGCCTCTGAGATAGTATCGTTGGCTTTGGGTTGGTGGGAGGACTTTAAAAAGGCTAGAAGTTCTGTAATAGAGTCAAGGATTGTTTTTCAGTCTAGATGGTCAAAACCCTCAGTTGGGTTTGTAAACCTTAATATTGATGTTGCCTTCGATCCAAATACTGGAAGAGCAGGGTTAGGAGGAGTTTTCCGTGATCATGAAGGTTATTGTCTGGGAGCTTTCACCAAGTTCATTGTGTCTGCCAGCTCTCCTCAACATAGTGAACTCCTTGCAGTTCTTGAAGGTGTTGGATGGGCGCAAATACATCATCTGCTGCCACTGGTTGTGGAAACAGATTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

197

Amino Acids

22.19

Weight (kDa)

9.62

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 128 - 196 3.9e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 410
AclWI GGATC 1 cut(s) 395
AcsI RAATTY 1 cut(s) 35
AfiI CCNNNNNNNGG 3 cut(s) 365, 366, 410
AgsI TTSAA 1 cut(s) 530
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 4 cut(s) 17, 85, 467, 495
AluI AGCT 4 cut(s) 17, 85, 467, 495
AlwI GGATC 1 cut(s) 395
ApeKI GCWGC 2 cut(s) 85, 562
ApoI RAATTY 1 cut(s) 35
AspLEI GCGC 1 cut(s) 547
AsuHPI GGTGA 2 cut(s) 251, 463
BbvI GCAGC 2 cut(s) 72, 549
BccI CCATC 2 cut(s) 342, 534
BciT130I CCWGG 1 cut(s) 56
BclI TGATCA 1 cut(s) 442
BfaI CTAG 2 cut(s) 306, 345
BisI GCNGC 2 cut(s) 86, 563
BlsI GCNGC 2 cut(s) 87, 564
Bme1390I CCNGG 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 56
Bpu10I CCTNAGC 1 cut(s) 47
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
Bsc4I CCNNNNNNNGG 3 cut(s) 365, 366, 410
Bse1I ACTGG 2 cut(s) 415, 573
BseBI CCWGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 545
BseLI CCNNNNNNNGG 3 cut(s) 365, 366, 410
BseMII CTCAG 2 cut(s) 249, 375
BseNI ACTGG 2 cut(s) 415, 573
BseRI GAGGAG 3 cut(s) 178, 444, 489
BseXI GCAGC 2 cut(s) 72, 549
BslI CCNNNNNNNGG 3 cut(s) 365, 366, 410
Bsp143I GATC 2 cut(s) 400, 442
BspCNI CTCAG 2 cut(s) 250, 374
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 1 cut(s) 53
BspPI GGATC 1 cut(s) 395
BspQI GCTCTTC 1 cut(s) 409
BsrI ACTGG 2 cut(s) 415, 573
BssMI GATC 2 cut(s) 400, 442
Bst2UI CCWGG 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 409
BstC8I GCNNGC 1 cut(s) 493
BstDEI CTNAG 5 cut(s) 47, 118, 170, 258, 361
BstF5I GGATG 1 cut(s) 545
BstHHI GCGC 1 cut(s) 547
BstKTI GATC 2 cut(s) 403, 445
BstMBI GATC 2 cut(s) 400, 442
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 72, 549
BtsCI GGATG 1 cut(s) 545
BtsIMutI CAGTG 1 cut(s) 566
Cac8I GCNNGC 1 cut(s) 493
CciI TCATGA 1 cut(s) 445
CfoI GCGC 1 cut(s) 547
CviAII CATG 1 cut(s) 446
DdeI CTNAG 5 cut(s) 47, 118, 170, 258, 361
DpnI GATC 2 cut(s) 402, 444
DpnII GATC 2 cut(s) 400, 442
DraI TTTAAA 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 409
EarI CTCTTC 1 cut(s) 409
EcoRII CCWGG 1 cut(s) 54
FaeI CATG 1 cut(s) 449
FaiI YATR 8 cut(s) 27, 133, 185, 191, 199, 208, 447, 507
FatI CATG 1 cut(s) 445
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 2 cut(s) 86, 563
FokI GGATG 1 cut(s) 552
Fsp4HI GCNGC 2 cut(s) 86, 563
FspBI CTAG 2 cut(s) 306, 345
GlaI GCGC 1 cut(s) 546
GluI GCNGC 2 cut(s) 86, 563
HhaI GCGC 1 cut(s) 547
Hin1II CATG 1 cut(s) 449
Hin6I GCGC 1 cut(s) 545
HinP1I GCGC 1 cut(s) 545
HinfI GANTC 4 cut(s) 9, 193, 220, 323
HphI GGTGA 2 cut(s) 251, 463
Hpy166II GTNNAC 4 cut(s) 124, 176, 376, 512
Hpy188I TCNGA 3 cut(s) 8, 225, 259
Hpy188III TCNNGA 3 cut(s) 345, 446, 527
Hpy8I GTNNAC 4 cut(s) 124, 176, 376, 512
HpyAV CCTTC 5 cut(s) 36, 220, 406, 443, 524
HpyCH4V TGCA 1 cut(s) 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpyF3I CTNAG 5 cut(s) 47, 118, 170, 258, 361
Hsp92II CATG 1 cut(s) 449
HspAI GCGC 1 cut(s) 545
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 2 cut(s) 400, 442
LguI GCTCTTC 1 cut(s) 409
LmnI GCTCC 1 cut(s) 464
LpnPI CCDG 7 cut(s) 41, 68, 396, 405, 446, 505, 554
Lsp1109I GCAGC 2 cut(s) 72, 549
MaeI CTAG 2 cut(s) 306, 345
MalI GATC 2 cut(s) 402, 444
MboI GATC 2 cut(s) 400, 442
MboII GAAGA 2 cut(s) 91, 426
MluCI AATT 1 cut(s) 35
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 1 cut(s) 517
MseI TTAA 4 cut(s) 246, 297, 381, 589
MspR9I CCNGG 1 cut(s) 56
MvaI CCWGG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 82
NdeII GATC 2 cut(s) 400, 442
NlaIII CATG 1 cut(s) 449
NlaIV GGNNCC 1 cut(s) 53
PagI TCATGA 1 cut(s) 445
PciSI GCTCTTC 1 cut(s) 409
PfeI GAWTC 3 cut(s) 9, 193, 220
PflMI CCANNNNNTGG 1 cut(s) 410
PkrI GCNGC 2 cut(s) 87, 564
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 53
SapI GCTCTTC 1 cut(s) 409
SaqAI TTAA 4 cut(s) 246, 297, 381, 589
SatI GCNGC 2 cut(s) 86, 563
Sau3AI GATC 2 cut(s) 400, 442
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 56
Sse9I AATT 1 cut(s) 35
SspI AATATT 2 cut(s) 96, 385
SspMI CTAG 2 cut(s) 306, 345
StyD4I CCNGG 1 cut(s) 54
TaqI TCGA 1 cut(s) 399
TasI AATT 1 cut(s) 35
TfiI GAWTC 3 cut(s) 9, 193, 220
Tru1I TTAA 4 cut(s) 246, 297, 381, 589
Tru9I TTAA 4 cut(s) 246, 297, 381, 589
TscAI CASTG 1 cut(s) 573
TseI GCWGC 2 cut(s) 85, 562
TspDTI ATGAA 2 cut(s) 462, 469
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 1 cut(s) 573
Van91I CCANNNNNTGG 1 cut(s) 410
XapI RAATTY 1 cut(s) 35
XbaI TCTAGA 1 cut(s) 344
XspI CTAG 2 cut(s) 306, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.