FvH4_2g13902

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000591
Physical Location & Seq
Forward (+)
12192160 .. 12192633
474 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13902.t1

Sequence Viewer

Length: 474 bp
ATGGCTCCATCTGTGGCAGACTGGTTAGTTTCCTACATTCAGCCTAGTACTTCTTTTGCTACTGTGTTGATGATTATTTGGGCTATTTGGATGAATCAAAATTCCAAGGTTTGGGATGATGAGGCCAAGCCAGCGTCAGAAGCAGTTTCGTCAATACTGGGTTGGTTTGCAGAATATCAACTTGCTCATGAAAACCCAACGGTTCCTTTTAGGGTTTCTAGGATTAAATGTCAAAAACCCATGGTTGGGGTGATTAAACTTGATGTGGATGCAGCTTTTGATTCTCCTACTAGTCAAGTGGGTCTTGGAGGAGTGTTTAGGAATGCCAATGGGTCTTTCCTGTGGGGTGTTCGTCATTCGCTCTTGTGTACGGCTTCAGCAAAACATGCTGAGTTACTAGCACTAATAATGAGGATGGAGTATACTTTATCTCATGGTTTGGTACCTGTTGTGGTGGAGATAGATTGCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

158

Amino Acids

17.31

Weight (kDa)

5.73

Isoelectric Point (pI)

32.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 89 - 156 4.5e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 442
AccB1I GGYRCC 1 cut(s) 442
AccB7I CCANNNNNTGG 1 cut(s) 111
AccI GTMKAC 1 cut(s) 422
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 360
AfaI GTAC 3 cut(s) 49, 370, 444
AfiI CCNNNNNNNGG 3 cut(s) 111, 245, 246
AhlI ACTAGT 1 cut(s) 290
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 1 cut(s) 100
Asp718I GGTACC 1 cut(s) 442
AsuHPI GGTGA 1 cut(s) 262
BanI GGYRCC 1 cut(s) 442
BbvI GCAGC 1 cut(s) 284
BccI CCATC 2 cut(s) 16, 409
BceAI ACGGC 1 cut(s) 387
BcuI ACTAGT 1 cut(s) 290
BfaI CTAG 4 cut(s) 45, 219, 291, 398
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
BmcAI AGTACT 1 cut(s) 49
BmiI GGNNCC 3 cut(s) 6, 204, 444
BmrI ACTGGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 259
BmuI ACTGGG 1 cut(s) 167
BsaJI CCNNGG 2 cut(s) 105, 240
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 245, 246
Bse1I ACTGG 2 cut(s) 26, 162
BseDI CCNNGG 2 cut(s) 105, 240
BseGI GGATG 4 cut(s) 96, 121, 274, 420
BseLI CCNNNNNNNGG 3 cut(s) 111, 245, 246
BseMII CTCAG 1 cut(s) 381
BseNI ACTGG 2 cut(s) 26, 162
BseRI GAGGAG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 284
BshFI GGCC 1 cut(s) 125
BshNI GGYRCC 1 cut(s) 442
BslI CCNNNNNNNGG 3 cut(s) 111, 245, 246
BsmI GAATGC 1 cut(s) 328
BsnI GGCC 1 cut(s) 125
Bsp19I CCATGG 1 cut(s) 240
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 382
BspHI TCATGA 1 cut(s) 187
BspLI GGNNCC 3 cut(s) 6, 204, 444
BspT107I GGYRCC 1 cut(s) 442
BsrI ACTGG 2 cut(s) 26, 162
BssECI CCNNGG 2 cut(s) 105, 240
BssNAI GTATAC 1 cut(s) 423
BssT1I CCWWGG 2 cut(s) 105, 240
Bst1107I GTATAC 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 64, 202
BstAPI GCANNNNNTGC 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 390
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 4 cut(s) 96, 121, 274, 420
BstMWI GCNNNNNNNGC 3 cut(s) 131, 140, 386
BstNSI RCATGY 1 cut(s) 389
BstV1I GCAGC 1 cut(s) 284
BstZ17I GTATAC 1 cut(s) 423
BsuRI GGCC 1 cut(s) 125
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 4 cut(s) 96, 121, 274, 420
Cac8I GCNNGC 1 cut(s) 132
CciI TCATGA 1 cut(s) 187
CseI GACGC 1 cut(s) 123
Csp6I GTAC 3 cut(s) 48, 369, 443
CviAII CATG 4 cut(s) 188, 241, 386, 434
CviJI RGCY 7 cut(s) 5, 43, 83, 125, 130, 275, 374
CviKI_1 RGCY 7 cut(s) 5, 43, 83, 125, 130, 275, 374
CviQI GTAC 3 cut(s) 48, 369, 443
DdeI CTNAG 1 cut(s) 390
Eco130I CCWWGG 2 cut(s) 105, 240
Eco57I CTGAAG 1 cut(s) 360
EcoT14I CCWWGG 2 cut(s) 105, 240
ErhI CCWWGG 2 cut(s) 105, 240
FaeI CATG 4 cut(s) 191, 244, 389, 437
FaiI YATR 5 cut(s) 189, 242, 387, 423, 435
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FatI CATG 4 cut(s) 187, 240, 385, 433
FblI GTMKAC 1 cut(s) 422
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 4 cut(s) 103, 128, 281, 427
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 4 cut(s) 45, 219, 291, 398
GluI GCNGC 1 cut(s) 273
HaeIII GGCC 1 cut(s) 125
HgaI GACGC 1 cut(s) 123
Hin1II CATG 4 cut(s) 191, 244, 389, 437
HinfI GANTC 2 cut(s) 94, 281
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 2 cut(s) 369, 423
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 2 cut(s) 369, 423
HpyCH4III ACNGT 2 cut(s) 64, 202
HpyCH4V TGCA 2 cut(s) 170, 272
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 140, 386
HpyF3I CTNAG 1 cut(s) 390
Hsp92II CATG 4 cut(s) 191, 244, 389, 437
KpnI GGTACC 1 cut(s) 446
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 5 cut(s) 7, 143, 144, 353, 459
Lsp1109I GCAGC 1 cut(s) 284
LweI GCATC 1 cut(s) 259
MaeI CTAG 4 cut(s) 45, 219, 291, 398
MaeIII GTNAC 1 cut(s) 393
MluCI AATT 1 cut(s) 100
MnlI CCTC 3 cut(s) 115, 302, 405
MseI TTAA 2 cut(s) 225, 255
Mva1269I GAATGC 1 cut(s) 328
MwoI GCNNNNNNNGC 3 cut(s) 131, 140, 386
NcoI CCATGG 1 cut(s) 240
NlaIII CATG 4 cut(s) 191, 244, 389, 437
NlaIV GGNNCC 3 cut(s) 6, 204, 444
NspI RCATGY 1 cut(s) 389
PagI TCATGA 1 cut(s) 187
PctI GAATGC 1 cut(s) 328
PfeI GAWTC 2 cut(s) 94, 281
PflMI CCANNNNNTGG 1 cut(s) 111
PkrI GCNGC 1 cut(s) 274
PspN4I GGNNCC 3 cut(s) 6, 204, 444
RsaI GTAC 3 cut(s) 49, 370, 444
RsaNI GTAC 3 cut(s) 48, 369, 443
SaqAI TTAA 2 cut(s) 225, 255
SatI GCNGC 1 cut(s) 273
ScaI AGTACT 1 cut(s) 49
SetI ASST 3 cut(s) 111, 277, 448
SfaNI GCATC 1 cut(s) 259
SpeI ACTAGT 1 cut(s) 290
Sse9I AATT 1 cut(s) 100
SspMI CTAG 4 cut(s) 45, 219, 291, 398
StyI CCWWGG 2 cut(s) 105, 240
TaaI ACNGT 2 cut(s) 64, 202
TasI AATT 1 cut(s) 100
TatI WGTACW 1 cut(s) 47
TfiI GAWTC 2 cut(s) 94, 281
Tru1I TTAA 2 cut(s) 225, 255
Tru9I TTAA 2 cut(s) 225, 255
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 107, 204
Van91I CCANNNNNTGG 1 cut(s) 111
XapI RAATTY 1 cut(s) 100
XceI RCATGY 1 cut(s) 389
XmiI GTMKAC 1 cut(s) 422
XspI CTAG 4 cut(s) 45, 219, 291, 398
ZrmI AGTACT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.