Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 505 - 594 | 2.2e-13 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 433 |
| Acc36I | ACCTGC | 1 cut(s) | 433 |
| AccB1I | GGYRCC | 1 cut(s) | 694 |
| AccI | GTMKAC | 1 cut(s) | 1681 |
| AciI | CCGC | 8 cut(s) | 384, 399, 561, 765, 1021, 1222, 1301, 1730 |
| AclWI | GGATC | 2 cut(s) | 456, 1485 |
| AcsI | RAATTY | 6 cut(s) | 701, 858, 1334, 1393, 1511, 1635 |
| AcuI | CTGAAG | 4 cut(s) | 339, 837, 884, 1156 |
| AcyI | GRCGYC | 1 cut(s) | 972 |
| AfaI | GTAC | 3 cut(s) | 12, 732, 798 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 383, 578, 1881, 1919, 1964, 2009 |
| AflII | CTTAAG | 2 cut(s) | 272, 1759 |
| AgsI | TTSAA | 7 cut(s) | 27, 136, 463, 615, 1340, 1496, 1558 |
| AjiI | CACGTC | 1 cut(s) | 514 |
| AjnI | CCWGG | 4 cut(s) | 807, 1249, 1473, 1946 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 23, 55, 1568, 1600 |
| Alw21I | GWGCWC | 1 cut(s) | 853 |
| AlwI | GGATC | 2 cut(s) | 456, 1485 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1605 |
| AoxI | GGCC | 2 cut(s) | 120, 1446 |
| ApeKI | GCWGC | 8 cut(s) | 265, 549, 567, 626, 791, 1652, 1778, 1931 |
| ApoI | RAATTY | 6 cut(s) | 701, 858, 1334, 1393, 1511, 1635 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 812, 844 |
| AspS9I | GGNCC | 4 cut(s) | 120, 374, 982, 1922 |
| AsuC2I | CCSGG | 3 cut(s) | 509, 986, 1238 |
| AsuHPI | GGTGA | 5 cut(s) | 266, 428, 481, 982, 1737 |
| AsuII | TTCGAA | 1 cut(s) | 875 |
| AvaII | GGWCC | 3 cut(s) | 374, 982, 1922 |
| BanI | GGYRCC | 1 cut(s) | 694 |
| BanII | GRGCYC | 1 cut(s) | 853 |
| BauI | CACGAG | 1 cut(s) | 894 |
| BbsI | GAAGAC | 2 cut(s) | 69, 825 |
| Bbv12I | GWGCWC | 1 cut(s) | 853 |
| BbvI | GCAGC | 8 cut(s) | 277, 554, 561, 638, 803, 1639, 1765, 1918 |
| BccI | CCATC | 7 cut(s) | 88, 134, 692, 839, 962, 1147, 1326 |
| BceAI | ACGGC | 2 cut(s) | 278, 412 |
| BciT130I | CCWGG | 4 cut(s) | 809, 1251, 1475, 1948 |
| BciVI | GTATCC | 2 cut(s) | 1126, 1463 |
| BcnI | CCSGG | 3 cut(s) | 509, 986, 1238 |
| BfrI | CTTAAG | 2 cut(s) | 272, 1759 |
| BfuAI | ACCTGC | 1 cut(s) | 433 |
| BfuI | GTATCC | 2 cut(s) | 1126, 1463 |
| BglII | AGATCT | 2 cut(s) | 536, 1058 |
| Bme1390I | CCNGG | 7 cut(s) | 509, 809, 986, 1238, 1251, 1475, 1948 |
| Bme18I | GGWCC | 3 cut(s) | 374, 982, 1922 |
| BmgBI | CACGTC | 1 cut(s) | 514 |
| BmgT120I | GGNCC | 4 cut(s) | 120, 374, 982, 1922 |
| BmiI | GGNNCC | 3 cut(s) | 696, 813, 1614 |
| BmrFI | CCNGG | 7 cut(s) | 509, 809, 986, 1238, 1251, 1475, 1948 |
| BmsI | GCATC | 3 cut(s) | 1779, 1978, 2000 |
| BoxI | GACNNNNGTC | 1 cut(s) | 303 |
| BpiI | GAAGAC | 2 cut(s) | 69, 825 |
| Bpu14I | TTCGAA | 1 cut(s) | 875 |
| BpuMI | CCSGG | 3 cut(s) | 509, 986, 1238 |
| BsaAI | YACGTR | 1 cut(s) | 1328 |
| BsaHI | GRCGYC | 1 cut(s) | 972 |
| BsaJI | CCNNGG | 4 cut(s) | 507, 823, 1465, 1875 |
| BsaWI | WCCGGW | 1 cut(s) | 975 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 383, 578, 1881, 1919, 1964, 2009 |
| Bse1I | ACTGG | 1 cut(s) | 2014 |
| Bse3DI | GCAATG | 1 cut(s) | 92 |
| BseBI | CCWGG | 4 cut(s) | 809, 1251, 1475, 1948 |
| BseDI | CCNNGG | 4 cut(s) | 507, 823, 1465, 1875 |
| BseGI | GGATG | 4 cut(s) | 16, 145, 1770, 1993 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 383, 578, 1881, 1919, 1964, 2009 |
| BseMI | GCAATG | 1 cut(s) | 92 |
| BseMII | CTCAG | 1 cut(s) | 1676 |
| BseNI | ACTGG | 1 cut(s) | 2014 |
| BseRI | GAGGAG | 5 cut(s) | 937, 940, 989, 1003, 1006 |
| BseXI | GCAGC | 8 cut(s) | 277, 554, 561, 638, 803, 1639, 1765, 1918 |
| Bsh1285I | CGRYCG | 1 cut(s) | 980 |
| BshFI | GGCC | 2 cut(s) | 122, 1448 |
| BshNI | GGYRCC | 1 cut(s) | 694 |
| BsiEI | CGRYCG | 1 cut(s) | 980 |
| BsiHKAI | GWGCWC | 1 cut(s) | 853 |
| BsiSI | CCGG | 4 cut(s) | 509, 976, 985, 1238 |
| BslFI | GGGAC | 1 cut(s) | 1299 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 383, 578, 1881, 1919, 1964, 2009 |
| BsmFI | GGGAC | 1 cut(s) | 1299 |
| BsmI | GAATGC | 1 cut(s) | 184 |
| BsnI | GGCC | 2 cut(s) | 122, 1448 |
| Bsp119I | TTCGAA | 1 cut(s) | 875 |
| Bsp1286I | GDGCHC | 1 cut(s) | 853 |
| Bsp19I | CCATGG | 1 cut(s) | 1465 |
| BspACI | CCGC | 8 cut(s) | 384, 399, 561, 765, 1021, 1222, 1301, 1730 |
| BspANI | GGCC | 2 cut(s) | 122, 1448 |
| BspCNI | CTCAG | 1 cut(s) | 1677 |
| BspHI | TCATGA | 1 cut(s) | 1561 |
| BspLI | GGNNCC | 3 cut(s) | 696, 813, 1614 |
| BspMI | ACCTGC | 1 cut(s) | 433 |
| BspPI | GGATC | 2 cut(s) | 456, 1485 |
| BspQI | GCTCTTC | 1 cut(s) | 604 |
| BspT104I | TTCGAA | 1 cut(s) | 875 |
| BspT107I | GGYRCC | 1 cut(s) | 694 |
| BspTI | CTTAAG | 2 cut(s) | 272, 1759 |
| BsrDI | GCAATG | 1 cut(s) | 92 |
| BsrI | ACTGG | 1 cut(s) | 2014 |
| BssECI | CCNNGG | 4 cut(s) | 507, 823, 1465, 1875 |
| BssNI | GRCGYC | 1 cut(s) | 972 |
| BssSI | CACGAG | 1 cut(s) | 894 |
| BssT1I | CCWWGG | 3 cut(s) | 823, 1465, 1875 |
| Bst2BI | CACGAG | 1 cut(s) | 894 |
| Bst2UI | CCWGG | 4 cut(s) | 809, 1251, 1475, 1948 |
| Bst4CI | ACNGT | 5 cut(s) | 305, 312, 407, 467, 785 |
| Bst6I | CTCTTC | 7 cut(s) | 26, 604, 640, 655, 875, 946, 962 |
| BstACI | GRCGYC | 1 cut(s) | 972 |
| BstAFI | CTTAAG | 2 cut(s) | 272, 1759 |
| BstBAI | YACGTR | 1 cut(s) | 1328 |
| BstBI | TTCGAA | 1 cut(s) | 875 |
| BstC8I | GCNNGC | 1 cut(s) | 902 |
| BstDEI | CTNAG | 5 cut(s) | 178, 288, 542, 1352, 1685 |
| BstDSI | CCRYGG | 1 cut(s) | 1465 |
| BstEII | GGTNACC | 1 cut(s) | 988 |
| BstF5I | GGATG | 4 cut(s) | 16, 145, 1770, 1993 |
| BstMCI | CGRYCG | 1 cut(s) | 980 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 274, 558, 567, 1205, 1649, 1850, 1940 |
| BstNI | CCWGG | 4 cut(s) | 809, 1251, 1475, 1948 |
| BstNSI | RCATGY | 1 cut(s) | 506 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 303 |
| BstPI | GGTNACC | 1 cut(s) | 988 |
| BstSCI | CCNGG | 7 cut(s) | 507, 807, 984, 1236, 1249, 1473, 1946 |
| BstV1I | GCAGC | 8 cut(s) | 277, 554, 561, 638, 803, 1639, 1765, 1918 |
| BstV2I | GAAGAC | 2 cut(s) | 69, 825 |
| BstX2I | RGATCY | 2 cut(s) | 536, 1058 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 359, 1444 |
| BstYI | RGATCY | 2 cut(s) | 536, 1058 |
| BsuI | GTATCC | 2 cut(s) | 1126, 1463 |
| BsuRI | GGCC | 2 cut(s) | 122, 1448 |
| BtgI | CCRYGG | 1 cut(s) | 1465 |
| BtrI | CACGTC | 1 cut(s) | 514 |
| BtsCI | GGATG | 4 cut(s) | 16, 145, 1770, 1993 |
| BveI | ACCTGC | 1 cut(s) | 433 |
| Cac8I | GCNNGC | 1 cut(s) | 902 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1605 |
| CciI | TCATGA | 1 cut(s) | 1561 |
| Cfr13I | GGNCC | 4 cut(s) | 120, 374, 982, 1922 |
| CpoI | CGGWCCG | 1 cut(s) | 982 |
| CseI | GACGC | 1 cut(s) | 961 |
| CsiI | ACCWGGT | 1 cut(s) | 1249 |
| Csp6I | GTAC | 3 cut(s) | 11, 731, 797 |
| CspI | CGGWCCG | 1 cut(s) | 982 |
| CviQI | GTAC | 3 cut(s) | 11, 731, 797 |
| DdeI | CTNAG | 5 cut(s) | 178, 288, 542, 1352, 1685 |
| DraI | TTTAAA | 1 cut(s) | 1897 |
| Eam1104I | CTCTTC | 7 cut(s) | 26, 604, 640, 655, 875, 946, 962 |
| EarI | CTCTTC | 7 cut(s) | 26, 604, 640, 655, 875, 946, 962 |
| EciI | GGCGGA | 1 cut(s) | 1237 |
| Ecl136II | GAGCTC | 1 cut(s) | 851 |
| Eco130I | CCWWGG | 3 cut(s) | 823, 1465, 1875 |
| Eco24I | GRGCYC | 1 cut(s) | 853 |
| Eco32I | GATATC | 1 cut(s) | 220 |
| Eco47I | GGWCC | 3 cut(s) | 374, 982, 1922 |
| Eco53kI | GAGCTC | 1 cut(s) | 851 |
| Eco57I | CTGAAG | 4 cut(s) | 339, 837, 884, 1156 |
| Eco91I | GGTNACC | 1 cut(s) | 988 |
| EcoICRI | GAGCTC | 1 cut(s) | 851 |
| EcoO65I | GGTNACC | 1 cut(s) | 988 |
| EcoRI | GAATTC | 2 cut(s) | 858, 1393 |
| EcoRII | CCWGG | 4 cut(s) | 807, 1249, 1473, 1946 |
| EcoRV | GATATC | 1 cut(s) | 220 |
| EcoT14I | CCWWGG | 3 cut(s) | 823, 1465, 1875 |
| EcoT22I | ATGCAT | 2 cut(s) | 1119, 1993 |
| EcoT38I | GRGCYC | 1 cut(s) | 853 |
| ErhI | CCWWGG | 3 cut(s) | 823, 1465, 1875 |
| FaqI | GGGAC | 1 cut(s) | 1299 |
| FauI | CCCGC | 2 cut(s) | 758, 1028 |
| FblI | GTMKAC | 1 cut(s) | 1681 |
| FokI | GGATG | 4 cut(s) | 3, 152, 1757, 2000 |
| FriOI | GRGCYC | 1 cut(s) | 853 |
| HaeIII | GGCC | 2 cut(s) | 122, 1448 |
| HapII | CCGG | 4 cut(s) | 509, 976, 985, 1238 |
| HgaI | GACGC | 1 cut(s) | 961 |
| Hin1I | GRCGYC | 1 cut(s) | 972 |
| HincII | GTYRAC | 2 cut(s) | 308, 1682 |
| HindII | GTYRAC | 2 cut(s) | 308, 1682 |
| HindIII | AAGCTT | 1 cut(s) | 902 |
| HinfI | GANTC | 4 cut(s) | 775, 1312, 1558, 1785 |
| HpaII | CCGG | 4 cut(s) | 509, 976, 985, 1238 |
| HphI | GGTGA | 5 cut(s) | 266, 428, 481, 982, 1737 |
| Hpy166II | GTNNAC | 5 cut(s) | 308, 1145, 1682, 1691, 1887 |
| Hpy188III | TCNNGA | 8 cut(s) | 210, 712, 718, 741, 1562, 1606, 1858, 1938 |
| Hpy8I | GTNNAC | 5 cut(s) | 308, 1145, 1682, 1691, 1887 |
| HpyAV | CCTTC | 7 cut(s) | 130, 349, 503, 640, 1603, 1923, 1968 |
| HpyCH4III | ACNGT | 5 cut(s) | 305, 312, 407, 467, 785 |
| HpyCH4IV | ACGT | 3 cut(s) | 513, 1327, 1693 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 274, 558, 567, 1205, 1649, 1850, 1940 |
| HpyF3I | CTNAG | 5 cut(s) | 178, 288, 542, 1352, 1685 |
| HpySE526I | ACGT | 3 cut(s) | 513, 1327, 1693 |
| Hsp92I | GRCGYC | 1 cut(s) | 972 |
| LguI | GCTCTTC | 1 cut(s) | 604 |
| LmnI | GCTCC | 4 cut(s) | 167, 848, 1466, 1618 |
| Lsp1109I | GCAGC | 8 cut(s) | 277, 554, 561, 638, 803, 1639, 1765, 1918 |
| LweI | GCATC | 3 cut(s) | 1779, 1978, 2000 |
| MabI | ACCWGGT | 1 cut(s) | 1249 |
| MaeII | ACGT | 3 cut(s) | 513, 1327, 1693 |
| MaeIII | GTNAC | 4 cut(s) | 472, 988, 1432, 1743 |
| MflI | RGATCY | 2 cut(s) | 536, 1058 |
| MhlI | GDGCHC | 1 cut(s) | 853 |
| MlyI | GAGTC | 2 cut(s) | 769, 1321 |
| MmeI | TCCRAC | 1 cut(s) | 817 |
| Mph1103I | ATGCAT | 2 cut(s) | 1119, 1993 |
| MseI | TTAA | 9 cut(s) | 248, 273, 759, 1190, 1263, 1287, 1658, 1760, 1896 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1122 |
| MspCI | CTTAAG | 2 cut(s) | 272, 1759 |
| MspI | CCGG | 4 cut(s) | 509, 976, 985, 1238 |
| MspR9I | CCNGG | 7 cut(s) | 509, 809, 986, 1238, 1251, 1475, 1948 |
| MssI | GTTTAAAC | 1 cut(s) | 1897 |
| Mva1269I | GAATGC | 1 cut(s) | 184 |
| MvaI | CCWGG | 4 cut(s) | 809, 1251, 1475, 1948 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 274, 558, 567, 1205, 1649, 1850, 1940 |
| NciI | CCSGG | 3 cut(s) | 509, 986, 1238 |
| NcoI | CCATGG | 1 cut(s) | 1465 |
| NlaIV | GGNNCC | 3 cut(s) | 696, 813, 1614 |
| NmeAIII | GCCGAG | 1 cut(s) | 558 |
| NmuCI | GTSAC | 4 cut(s) | 472, 988, 1432, 1743 |
| NsiI | ATGCAT | 2 cut(s) | 1119, 1993 |
| NspI | RCATGY | 1 cut(s) | 506 |
| NspV | TTCGAA | 1 cut(s) | 875 |
| PagI | TCATGA | 1 cut(s) | 1561 |
| PaqCI | CACCTGC | 1 cut(s) | 433 |
| PciSI | GCTCTTC | 1 cut(s) | 604 |
| PctI | GAATGC | 1 cut(s) | 184 |
| PfeI | GAWTC | 2 cut(s) | 1558, 1785 |
| PleI | GAGTC | 2 cut(s) | 769, 1320 |
| PmeI | GTTTAAAC | 1 cut(s) | 1897 |
| PpsI | GAGTC | 2 cut(s) | 769, 1320 |
| Ppu21I | YACGTR | 1 cut(s) | 1328 |
| PshAI | GACNNNNGTC | 1 cut(s) | 303 |
| Psp124BI | GAGCTC | 1 cut(s) | 853 |
| Psp6I | CCWGG | 4 cut(s) | 807, 1249, 1473, 1946 |
| PspEI | GGTNACC | 1 cut(s) | 988 |
| PspGI | CCWGG | 4 cut(s) | 807, 1249, 1473, 1946 |
| PspN4I | GGNNCC | 3 cut(s) | 696, 813, 1614 |
| PspPI | GGNCC | 4 cut(s) | 120, 374, 982, 1922 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1605 |
| PsuI | RGATCY | 2 cut(s) | 536, 1058 |
| RsaI | GTAC | 3 cut(s) | 12, 732, 798 |
| RsaNI | GTAC | 3 cut(s) | 11, 731, 797 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1122 |
| Rsr2I | CGGWCCG | 1 cut(s) | 982 |
| RsrII | CGGWCCG | 1 cut(s) | 982 |
| SacI | GAGCTC | 1 cut(s) | 853 |
| SalI | GTCGAC | 1 cut(s) | 1680 |
| SapI | GCTCTTC | 1 cut(s) | 604 |
| SaqAI | TTAA | 9 cut(s) | 248, 273, 759, 1190, 1263, 1287, 1658, 1760, 1896 |
| Sau96I | GGNCC | 4 cut(s) | 120, 374, 982, 1922 |
| SchI | GAGTC | 2 cut(s) | 769, 1321 |
| ScrFI | CCNGG | 7 cut(s) | 509, 809, 986, 1238, 1251, 1475, 1948 |
| SduI | GDGCHC | 1 cut(s) | 853 |
| SexAI | ACCWGGT | 1 cut(s) | 1249 |
| SfaNI | GCATC | 3 cut(s) | 1779, 1978, 2000 |
| SfuI | TTCGAA | 1 cut(s) | 875 |
| SinI | GGWCC | 3 cut(s) | 374, 982, 1922 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1122 |
| SmlI | CTYRAG | 2 cut(s) | 272, 1759 |
| SmoI | CTYRAG | 2 cut(s) | 272, 1759 |
| SsiI | CCGC | 8 cut(s) | 384, 399, 561, 765, 1021, 1222, 1301, 1730 |
| SspI | AATATT | 1 cut(s) | 1663 |
| SstI | GAGCTC | 1 cut(s) | 853 |
| StyD4I | CCNGG | 7 cut(s) | 507, 807, 984, 1236, 1249, 1473, 1946 |
| StyI | CCWWGG | 3 cut(s) | 823, 1465, 1875 |
| TaaI | ACNGT | 5 cut(s) | 305, 312, 407, 467, 785 |
| TaiI | ACGT | 3 cut(s) | 516, 1330, 1696 |
| TaqI | TCGA | 5 cut(s) | 188, 875, 1580, 1681, 1857 |
| TaqII | GACCGA | 1 cut(s) | 970 |
| TatI | WGTACW | 1 cut(s) | 10 |
| TauI | GCSGC | 2 cut(s) | 387, 402 |
| TfiI | GAWTC | 2 cut(s) | 1558, 1785 |
| Tru1I | TTAA | 9 cut(s) | 248, 273, 759, 1190, 1263, 1287, 1658, 1760, 1896 |
| Tru9I | TTAA | 9 cut(s) | 248, 273, 759, 1190, 1263, 1287, 1658, 1760, 1896 |
| TseFI | GTSAC | 4 cut(s) | 472, 988, 1432, 1743 |
| TseI | GCWGC | 8 cut(s) | 265, 549, 567, 626, 791, 1652, 1778, 1931 |
| Tsp45I | GTSAC | 4 cut(s) | 472, 988, 1432, 1743 |
| TspDTI | ATGAA | 5 cut(s) | 75, 1504, 1710, 1854, 1905 |
| TspGWI | ACGGA | 1 cut(s) | 787 |
| Vha464I | CTTAAG | 2 cut(s) | 272, 1759 |
| VpaK11BI | GGWCC | 3 cut(s) | 374, 982, 1922 |
| XapI | RAATTY | 6 cut(s) | 701, 858, 1334, 1393, 1511, 1635 |
| XbaI | TCTAGA | 1 cut(s) | 1937 |
| XceI | RCATGY | 1 cut(s) | 506 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 359, 1325 |
| XmiI | GTMKAC | 1 cut(s) | 1681 |
| Zsp2I | ATGCAT | 2 cut(s) | 1119, 1993 |