Rmu_sc0041085.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041085.1
OG0000591
Physical Location & Seq
Forward (+)
1 .. 1538
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041085.1_g000001.1.cds

Sequence Viewer

Length: 589 bp
ctgggtttggatcgaagttgatcatcagttggtggtgatcggaagcttcttggttttccggtctcagttttggtggatcgtgccgtggaaagggaggtcgtcgacgatggtggcggtatcatcgactgcaatttggcagcggaggcgtcaaggtgctcctgctagcttcatttcctgggattgggccttagggtctgggcctgggcaatgtgggttcagtctctgggcctgtttgaagattatttatattccccttagtcctgggaaccatgacgataggtggatttggggtggcgacaagagagatcacttcaaggttaaatcagcctaccatgtagcttggagtcggattctcactgatgatccttccccacataaccctagtgcttctctttggcgtcggttgtggaacgctccagtttcaggtagcgtcaagatatgtgcatggaaagcagtctctaatgttcttcctactcagagtaggcttagtgaacgtggtattgacttggatacccaatgcccatctgcgttgaagaagttgagacttgtattcatgcggtccgcgattgtccccatgctactagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

195

Amino Acids

22.17

Weight (kDa)

10.1

Isoelectric Point (pI)

53.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 102
AccII CGCG 1 cut(s) 564
AciI CCGC 4 cut(s) 114, 140, 557, 562
AclWI GGATC 3 cut(s) 18, 84, 357
AcyI GRCGYC 2 cut(s) 146, 398
AfiI CCNNNNNNNGG 3 cut(s) 90, 181, 423
AgsI TTSAA 3 cut(s) 236, 314, 533
AjnI CCWGG 3 cut(s) 174, 200, 260
AluBI AGCT 4 cut(s) 46, 166, 339, 585
AluI AGCT 4 cut(s) 46, 166, 339, 585
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 4 cut(s) 67, 225, 461, 536
AlwI GGATC 3 cut(s) 18, 84, 357
AlwNI CAGNNNCTG 1 cut(s) 223
AoxI GGCC 3 cut(s) 184, 198, 226
ApeKI GCWGC 1 cut(s) 137
AspS9I GGNCC 4 cut(s) 184, 198, 226, 559
AsuHPI GGTGA 1 cut(s) 47
AsuNHI GCTAGC 1 cut(s) 162
AvaII GGWCC 1 cut(s) 559
AxyI CCTNAGG 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 149
BccI CCATC 2 cut(s) 101, 530
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 3 cut(s) 176, 202, 262
BciVI GTATCC 1 cut(s) 503
BclI TGATCA 1 cut(s) 20
BcoDI GTCTC 4 cut(s) 67, 225, 461, 536
BfaI CTAG 3 cut(s) 163, 382, 582
BfuI GTATCC 1 cut(s) 503
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 3 cut(s) 176, 202, 262
Bme18I GGWCC 1 cut(s) 559
BmgT120I GGNCC 4 cut(s) 184, 198, 226, 559
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 3 cut(s) 176, 202, 262
BmtI GCTAGC 1 cut(s) 166
BpmI CTGGAG 1 cut(s) 400
BsaHI GRCGYC 2 cut(s) 146, 398
BsaI GGTCTC 1 cut(s) 67
BsaJI CCNNGG 4 cut(s) 84, 175, 201, 261
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 3 cut(s) 90, 181, 423
Bse1I ACTGG 1 cut(s) 417
Bse21I CCTNAGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 213
BseBI CCWGG 3 cut(s) 176, 202, 262
BseDI CCNNGG 4 cut(s) 84, 175, 201, 261
BseLI CCNNNNNNNGG 3 cut(s) 90, 181, 423
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 78, 489
BseNI ACTGG 1 cut(s) 417
BseXI GCAGC 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 564
BshFI GGCC 3 cut(s) 186, 200, 228
BsiHKAI GWGCWC 1 cut(s) 158
BsiSI CCGG 1 cut(s) 59
BslFI GGGAC 1 cut(s) 555
BslI CCNNNNNNNGG 3 cut(s) 90, 181, 423
BsmAI GTCTC 4 cut(s) 67, 225, 461, 536
BsmFI GGGAC 1 cut(s) 555
BsnI GGCC 3 cut(s) 186, 200, 228
Bso31I GGTCTC 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 6 cut(s) 10, 20, 37, 76, 305, 362
BspACI CCGC 4 cut(s) 114, 140, 557, 562
BspANI GGCC 3 cut(s) 186, 200, 228
BspCNI CTCAG 2 cut(s) 77, 488
BspFNI CGCG 1 cut(s) 564
BspLI GGNNCC 1 cut(s) 267
BspOI GCTAGC 1 cut(s) 166
BspPI GGATC 3 cut(s) 18, 84, 357
BspTNI GGTCTC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 1 cut(s) 417
BssECI CCNNGG 4 cut(s) 84, 175, 201, 261
BssMI GATC 6 cut(s) 10, 20, 37, 76, 305, 362
BssNI GRCGYC 2 cut(s) 146, 398
Bst2UI CCWGG 3 cut(s) 176, 202, 262
BstACI GRCGYC 2 cut(s) 146, 398
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 5 cut(s) 64, 188, 255, 475, 486
BstDSI CCRYGG 1 cut(s) 84
BstFNI CGCG 1 cut(s) 564
BstKTI GATC 6 cut(s) 13, 23, 40, 79, 308, 365
BstMAI GTCTC 4 cut(s) 67, 225, 461, 536
BstMBI GATC 6 cut(s) 10, 20, 37, 76, 305, 362
BstMWI GCNNNNNNNGC 2 cut(s) 143, 450
BstNI CCWGG 3 cut(s) 176, 202, 262
BstSCI CCNGG 3 cut(s) 174, 200, 260
BstUI CGCG 1 cut(s) 564
BstV1I GCAGC 1 cut(s) 149
Bsu36I CCTNAGG 1 cut(s) 188
BsuI GTATCC 1 cut(s) 503
BsuRI GGCC 3 cut(s) 186, 200, 228
BtgI CCRYGG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 1 cut(s) 164
CaiI CAGNNNCTG 1 cut(s) 223
Cfr13I GGNCC 4 cut(s) 184, 198, 226, 559
CpoI CGGWCCG 1 cut(s) 559
CseI GACGC 3 cut(s) 135, 387, 419
CspI CGGWCCG 1 cut(s) 559
CviAII CATG 5 cut(s) 270, 333, 445, 554, 575
CviJI RGCY 9 cut(s) 46, 166, 186, 200, 228, 327, 339, 485, 585
CviKI_1 RGCY 9 cut(s) 46, 166, 186, 200, 228, 327, 339, 485, 585
DdeI CTNAG 5 cut(s) 64, 188, 255, 475, 486
DpnI GATC 6 cut(s) 12, 22, 39, 78, 307, 364
DpnII GATC 6 cut(s) 10, 20, 37, 76, 305, 362
Eco31I GGTCTC 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 559
Eco81I CCTNAGG 1 cut(s) 188
EcoRII CCWGG 3 cut(s) 174, 200, 260
FaeI CATG 5 cut(s) 273, 336, 448, 557, 578
FaiI YATR 8 cut(s) 247, 271, 334, 376, 440, 446, 555, 576
FaqI GGGAC 1 cut(s) 555
FatI CATG 5 cut(s) 269, 332, 444, 553, 574
FbaI TGATCA 1 cut(s) 20
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 3 cut(s) 163, 382, 582
GluI GCNGC 1 cut(s) 138
GsuI CTGGAG 1 cut(s) 400
HaeIII GGCC 3 cut(s) 186, 200, 228
HapII CCGG 1 cut(s) 59
HgaI GACGC 3 cut(s) 135, 387, 419
Hin1I GRCGYC 2 cut(s) 146, 398
Hin1II CATG 5 cut(s) 273, 336, 448, 557, 578
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 2 cut(s) 344, 350
HpaII CCGG 1 cut(s) 59
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 2 cut(s) 103, 492
Hpy188I TCNGA 3 cut(s) 42, 349, 478
Hpy188III TCNNGA 1 cut(s) 434
Hpy8I GTNNAC 2 cut(s) 103, 492
Hpy99I CGWCG 3 cut(s) 104, 107, 403
HpyAV CCTTC 1 cut(s) 376
HpyCH4IV ACGT 1 cut(s) 494
HpyCH4V TGCA 2 cut(s) 129, 444
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 450
HpyF3I CTNAG 5 cut(s) 64, 188, 255, 475, 486
HpySE526I ACGT 1 cut(s) 494
Hsp92I GRCGYC 2 cut(s) 146, 398
Hsp92II CATG 5 cut(s) 273, 336, 448, 557, 578
Ksp22I TGATCA 1 cut(s) 20
Kzo9I GATC 6 cut(s) 10, 20, 37, 76, 305, 362
LmnI GCTCC 2 cut(s) 161, 419
Lsp1109I GCAGC 1 cut(s) 149
MaeI CTAG 3 cut(s) 163, 382, 582
MaeII ACGT 1 cut(s) 494
MalI GATC 6 cut(s) 12, 22, 39, 78, 307, 364
MboI GATC 6 cut(s) 10, 20, 37, 76, 305, 362
MboII GAAGA 3 cut(s) 248, 459, 545
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 1 cut(s) 130
MlyI GAGTC 1 cut(s) 353
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 2 cut(s) 88, 136
MseI TTAA 1 cut(s) 319
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 3 cut(s) 176, 202, 262
MvaI CCWGG 3 cut(s) 176, 202, 262
MvnI CGCG 1 cut(s) 564
MwoI GCNNNNNNNGC 2 cut(s) 143, 450
NdeII GATC 6 cut(s) 10, 20, 37, 76, 305, 362
NheI GCTAGC 1 cut(s) 162
NlaIII CATG 5 cut(s) 273, 336, 448, 557, 578
NlaIV GGNNCC 1 cut(s) 267
PfeI GAWTC 1 cut(s) 350
PkrI GCNGC 1 cut(s) 139
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
Psp6I CCWGG 3 cut(s) 174, 200, 260
PspGI CCWGG 3 cut(s) 174, 200, 260
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 4 cut(s) 184, 198, 226, 559
PstNI CAGNNNCTG 1 cut(s) 223
Rsr2I CGGWCCG 1 cut(s) 559
RsrII CGGWCCG 1 cut(s) 559
SalI GTCGAC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 319
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 6 cut(s) 10, 20, 37, 76, 305, 362
Sau96I GGNCC 4 cut(s) 184, 198, 226, 559
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 3 cut(s) 176, 202, 262
SduI GDGCHC 1 cut(s) 158
SgrDI CGTCGACG 1 cut(s) 101
SinI GGWCC 1 cut(s) 559
Sse9I AATT 1 cut(s) 130
SsiI CCGC 4 cut(s) 114, 140, 557, 562
SspMI CTAG 3 cut(s) 163, 382, 582
StyD4I CCNGG 3 cut(s) 174, 200, 260
TaiI ACGT 1 cut(s) 497
TaqI TCGA 3 cut(s) 13, 102, 123
TasI AATT 1 cut(s) 130
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 1 cut(s) 319
Tru9I TTAA 1 cut(s) 319
TscAI CASTG 1 cut(s) 362
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 158, 542
TspRI CASTG 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 559
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 3 cut(s) 163, 382, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.