RchiOBHm_Chr4g0389021

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000591
Physical Location & Seq
Forward (+)
4189035 .. 4189802
768 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36219

Sequence Viewer

Length: 768 bp
ATGCTCCAGGTAGCTCTTATTCCTAATCTTCCAGGTGCCTATTGTGTTGCGGATTGGTTGGTATCCATTTACTCACAGGCCCCTTTAGTTTTTGCTCCTTTATTGATGACCATCTGGGCTACTTGGCGTAACAGAAATTCCCGGATTTGGGATGAGGAGTGCAAGTTGGCTACTGATATTGTGCCAATAACATTGGGTTGGTGGGAGGATTACAAGGCTGCTCGCACTCCCTCACCTTCTGTTCATAGATCAGGGACTTTAACGCAATGGAAAAAGCCTCCTATTGGTTTTATTAAATTGAACGTTGATGCGGCCTTTTGTTTGGATTCGGGTATCACAGGATTGGGAGGTGTTTTCAGGGACCATGAAGGAGTTGTGTTGGGGGGCTTTCGACACACAGTAATGGTGTCTAGTTCTGCCCGCCATGCGGAGTTGTTGGCTTTGCTTCTAGGAGTGCAGTTGGCTATTGATCAGCATTTAACACTAGTGATAGTGGAAACAGATTGTATGGATTTGGTTCAAGCTATCTCTAGCTCTTCCCTTGATCAATTGGAGTTGGGGTTCTTAATTGATGACTTGCGAAACTTGGTGCATGCTGCTTTAGATGCTAAAGTGGTTTTTGGTAATAGGCAGGTTAATCTAGTCGCGCATACTTTGGCGCAGGAGGCCAAAGCTGGTCAATTTAGTATTGATTTCTTTACCAACATCCCTCCAAGTGTGGAGGTTCTAATTTTCTCTGATTGTAATGATGCTTCATCAATGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

255

Amino Acids

27.98

Weight (kDa)

5.13

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 101 - 223 1.2e-23 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 622
AccB1I GGYRCC 1 cut(s) 35
AccII CGCG 1 cut(s) 647
AciI CCGC 4 cut(s) 50, 311, 421, 428
AclI AACGTT 1 cut(s) 303
AcsI RAATTY 1 cut(s) 136
AfiI CCNNNNNNNGG 4 cut(s) 147, 148, 284, 427
AgsI TTSAA 2 cut(s) 301, 521
AhlI ACTAGT 1 cut(s) 484
AjnI CCWGG 2 cut(s) 6, 31
AloI GAACNNNNNNTCC 2 cut(s) 545, 577
AluBI AGCT 4 cut(s) 14, 524, 534, 674
AluI AGCT 4 cut(s) 14, 524, 534, 674
AoxI GGCC 3 cut(s) 78, 312, 666
ApeKI GCWGC 2 cut(s) 218, 596
ApoI RAATTY 1 cut(s) 136
AspLEI GCGC 2 cut(s) 649, 661
AspS9I GGNCC 2 cut(s) 79, 361
AsuC2I CCSGG 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 225
AvaII GGWCC 1 cut(s) 361
BanI GGYRCC 1 cut(s) 35
BarI GAAGNNNNNNTAC 2 cut(s) 736, 768
BbvI GCAGC 2 cut(s) 205, 583
BccI CCATC 1 cut(s) 119
BciT130I CCWGG 2 cut(s) 8, 33
BciVI GTATCC 1 cut(s) 73
BclI TGATCA 2 cut(s) 469, 544
BcnI CCSGG 1 cut(s) 142
BcuI ACTAGT 1 cut(s) 484
BfaI CTAG 5 cut(s) 411, 449, 485, 531, 641
BfuAI ACCTGC 1 cut(s) 622
BfuI GTATCC 1 cut(s) 73
BisI GCNGC 3 cut(s) 219, 312, 597
BlsI GCNGC 3 cut(s) 220, 313, 598
Bme1390I CCNGG 3 cut(s) 8, 33, 142
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 2 cut(s) 79, 361
BmiI GGNNCC 3 cut(s) 37, 81, 362
BmrFI CCNGG 3 cut(s) 8, 33, 142
BmsI GCATC 3 cut(s) 298, 595, 739
BpuMI CCSGG 1 cut(s) 142
BsaBI GATNNNNATC 1 cut(s) 110
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 545, 575
Bsc4I CCNNNNNNNGG 4 cut(s) 147, 148, 284, 427
Bse3DI GCAATG 1 cut(s) 272
Bse8I GATNNNNATC 1 cut(s) 110
BseBI CCWGG 2 cut(s) 8, 33
BseGI GGATG 2 cut(s) 157, 705
BseJI GATNNNNATC 1 cut(s) 110
BseLI CCNNNNNNNGG 4 cut(s) 147, 148, 284, 427
BseMI GCAATG 1 cut(s) 272
BseRI GAGGAG 1 cut(s) 170
BseXI GCAGC 2 cut(s) 205, 583
BsgI GTGCAG 1 cut(s) 476
Bsh1236I CGCG 1 cut(s) 647
BshFI GGCC 3 cut(s) 80, 314, 668
BshNI GGYRCC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 142
BslFI GGGAC 2 cut(s) 268, 374
BslI CCNNNNNNNGG 4 cut(s) 147, 148, 284, 427
BsmFI GGGAC 2 cut(s) 268, 374
BsnI GGCC 3 cut(s) 80, 314, 668
Bsp143I GATC 3 cut(s) 248, 469, 544
BspACI CCGC 4 cut(s) 50, 311, 421, 428
BspANI GGCC 3 cut(s) 80, 314, 668
BspFNI CGCG 1 cut(s) 647
BspLI GGNNCC 3 cut(s) 37, 81, 362
BspMI ACCTGC 1 cut(s) 622
BspQI GCTCTTC 1 cut(s) 541
BspT107I GGYRCC 1 cut(s) 35
BsrDI GCAATG 1 cut(s) 272
BssMI GATC 3 cut(s) 248, 469, 544
Bst2UI CCWGG 2 cut(s) 8, 33
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 1 cut(s) 541
BstC8I GCNNGC 3 cut(s) 223, 421, 594
BstF5I GGATG 2 cut(s) 157, 705
BstFNI CGCG 1 cut(s) 647
BstHHI GCGC 2 cut(s) 649, 661
BstKTI GATC 3 cut(s) 251, 472, 547
BstMBI GATC 3 cut(s) 248, 469, 544
BstMWI GCNNNNNNNGC 3 cut(s) 425, 605, 665
BstNI CCWGG 2 cut(s) 8, 33
BstNSI RCATGY 1 cut(s) 596
BstSCI CCNGG 3 cut(s) 6, 31, 140
BstUI CGCG 1 cut(s) 647
BstV1I GCAGC 2 cut(s) 205, 583
BsuI GTATCC 1 cut(s) 73
BsuRI GGCC 3 cut(s) 80, 314, 668
BtsCI GGATG 2 cut(s) 157, 705
BveI ACCTGC 1 cut(s) 622
Cac8I GCNNGC 3 cut(s) 223, 421, 594
CfoI GCGC 2 cut(s) 649, 661
Cfr13I GGNCC 2 cut(s) 79, 361
CviAII CATG 3 cut(s) 365, 425, 593
DpnI GATC 3 cut(s) 250, 471, 546
DpnII GATC 3 cut(s) 248, 469, 544
Eam1104I CTCTTC 1 cut(s) 541
EarI CTCTTC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 361
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 6, 31
FaeI CATG 3 cut(s) 368, 428, 596
FaiI YATR 6 cut(s) 246, 366, 426, 509, 594, 651
FaqI GGGAC 2 cut(s) 268, 374
FatI CATG 3 cut(s) 364, 424, 592
FauI CCCGC 1 cut(s) 428
FbaI TGATCA 2 cut(s) 469, 544
Fnu4HI GCNGC 3 cut(s) 219, 312, 597
FokI GGATG 2 cut(s) 164, 692
Fsp4HI GCNGC 3 cut(s) 219, 312, 597
FspBI CTAG 5 cut(s) 411, 449, 485, 531, 641
GlaI GCGC 2 cut(s) 648, 660
GluI GCNGC 3 cut(s) 219, 312, 597
HaeIII GGCC 3 cut(s) 80, 314, 668
HapII CCGG 1 cut(s) 142
HhaI GCGC 2 cut(s) 649, 661
Hin1II CATG 3 cut(s) 368, 428, 596
Hin6I GCGC 2 cut(s) 647, 659
HinP1I GCGC 2 cut(s) 647, 659
HinfI GANTC 1 cut(s) 326
HpaII CCGG 1 cut(s) 142
HphI GGTGA 1 cut(s) 225
Hpy188I TCNGA 1 cut(s) 739
HpyAV CCTTC 2 cut(s) 246, 362
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 3 cut(s) 162, 457, 592
HpyF10VI GCNNNNNNNGC 3 cut(s) 425, 605, 665
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 3 cut(s) 368, 428, 596
HspAI GCGC 2 cut(s) 647, 659
Ksp22I TGATCA 2 cut(s) 469, 544
Kzo9I GATC 3 cut(s) 248, 469, 544
LguI GCTCTTC 1 cut(s) 541
LmnI GCTCC 2 cut(s) 9, 100
Lsp1109I GCAGC 2 cut(s) 205, 583
LweI GCATC 3 cut(s) 298, 595, 739
MaeI CTAG 5 cut(s) 411, 449, 485, 531, 641
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 128
MalI GATC 3 cut(s) 250, 471, 546
MboI GATC 3 cut(s) 248, 469, 544
MboII GAAGA 2 cut(s) 20, 528
MfeI CAATTG 1 cut(s) 548
MluCI AATT 7 cut(s) 136, 296, 548, 567, 680, 729, 763
MnlI CCTC 8 cut(s) 148, 199, 241, 288, 341, 658, 715, 720
MseI TTAA 5 cut(s) 260, 294, 479, 566, 636
MslI CAYNNNNRTG 1 cut(s) 401
MspI CCGG 1 cut(s) 142
MspR9I CCNGG 3 cut(s) 8, 33, 142
MunI CAATTG 1 cut(s) 548
MvaI CCWGG 2 cut(s) 8, 33
MvnI CGCG 1 cut(s) 647
MwoI GCNNNNNNNGC 3 cut(s) 425, 605, 665
NciI CCSGG 1 cut(s) 142
NdeII GATC 3 cut(s) 248, 469, 544
NlaIII CATG 3 cut(s) 368, 428, 596
NlaIV GGNNCC 3 cut(s) 37, 81, 362
NspI RCATGY 1 cut(s) 596
PaeI GCATGC 1 cut(s) 596
PciSI GCTCTTC 1 cut(s) 541
PfeI GAWTC 1 cut(s) 326
PfoI TCCNGGA 1 cut(s) 140
PkrI GCNGC 3 cut(s) 220, 313, 598
Psp1406I AACGTT 1 cut(s) 303
Psp6I CCWGG 2 cut(s) 6, 31
PspGI CCWGG 2 cut(s) 6, 31
PspN4I GGNNCC 3 cut(s) 37, 81, 362
PspPI GGNCC 2 cut(s) 79, 361
RseI CAYNNNNRTG 1 cut(s) 401
SapI GCTCTTC 1 cut(s) 541
SaqAI TTAA 5 cut(s) 260, 294, 479, 566, 636
SatI GCNGC 3 cut(s) 219, 312, 597
Sau3AI GATC 3 cut(s) 248, 469, 544
Sau96I GGNCC 2 cut(s) 79, 361
ScrFI CCNGG 3 cut(s) 8, 33, 142
SfaNI GCATC 3 cut(s) 298, 595, 739
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 401
SpeI ACTAGT 1 cut(s) 484
SphI GCATGC 1 cut(s) 596
Sse9I AATT 7 cut(s) 136, 296, 548, 567, 680, 729, 763
SsiI CCGC 4 cut(s) 50, 311, 421, 428
SspMI CTAG 5 cut(s) 411, 449, 485, 531, 641
StyD4I CCNGG 3 cut(s) 6, 31, 140
TaaI ACNGT 1 cut(s) 400
TaiI ACGT 1 cut(s) 306
TaqI TCGA 1 cut(s) 391
TasI AATT 7 cut(s) 136, 296, 548, 567, 680, 729, 763
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 5 cut(s) 260, 294, 479, 566, 636
Tru9I TTAA 5 cut(s) 260, 294, 479, 566, 636
TseI GCWGC 2 cut(s) 218, 596
TspDTI ATGAA 3 cut(s) 233, 381, 744
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 1 cut(s) 136
XceI RCATGY 1 cut(s) 596
XspI CTAG 5 cut(s) 411, 449, 485, 531, 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.