Rorug03G0233200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000591
Physical Location & Seq
Reverse (-)
21517097 .. 21518676
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0233200.1

Sequence Viewer

Length: 1287 bp
ATGAAAGCTTTCCTCTTCTCTCTCCTAAAACCCCAAACCCTGTCTAAACCCACCAAGCTCCTACCACACCAACACCACCAATGTCGAGGCATCATCGCCAAGGTCCGCCTGAAATGGGTCAAGAACCGAAGCTTAGACCACATCATCGACACCGAGACCGATCTCAAAGCCGCCAGTCTCCTCAAGGACGCCATCAAGCGATCCCCAACTGGGTTCCTCACCGCCAAGTCCTTCGCCGATTGGCAAAAGCTTCTGGGCCTCACCGTCCCTGTTCTCCGATTCATGCGCAGGTACCCAACTCTGTTTCAAGAATTCCCACATGTCCGTTATGCCAATCTGCCTTGCTTTAAGTTAACAGACACTGCACTATTGCTAGACTCACAAGAACAAACCATACACCAAACCCATGAGAGTGACACTGTGGAGAGGCTTAGTAGAGTTCTGATGATGATGAAAACCAAGAGTTTGCCTCTGCAGTCTTTGTATCCTTTGAAATGGGATCTGGGTTTGCCTGATGGGTTTGAGAAAGTGTTGGTTCCAAAGTACCCGGATTGTTTTCGATTTGTTAAGGCCTCGGATGGGGTTACGCGATTGAAGGTCATACATTGTCCTGATGAGTATGCTGTTTCGGCATTGCAGAGGAGTAAAGAGGGTGGTGATGTGGGGGATGAGTATAGGCAGTTCAAGAGGGGGCAGACTGTGTTGGCTTTCCCTATGAGTTTTCCGAGGGGTTATGGGGCGCAGAAGAAGGTGAGGGCATGGATGGAGGAGTTTCAGAAGTTGCCATACATTTCGCCGTATGAGGATTCTAGGCATATTGATCCTAATAGTGATCTTATGGAGAAAAGGGTTGTTGGAGTTTTGCATGAGTTATTGAGCTTGACTATTCATAAGAAGACCAAGAGGAACTACTTGAGGATCATTAGAGAGGAGTTGAATCTTCCACATAAGTTTACGAGAATCTTCACAAGGTATCCGGGGATTTTCTACCTTTCATTGAAGTGTAAAACAACCACGGTAGCGCTCAGGGAAGGTTACCAACGAGGGAAGCTAGTGAACCCGCATCCGCTTGCACGTTTGAGAGAGAAGTTTTATCATGTAATGAGAACAGGGCTTATTTATCGCGGTAAAGGTGTGAATATGCTGTCTCAGCAAGATATGTTGCTTGACAATGTGGAGAGTGAAAGTGGTCAAGACGACTCTGAGGAGGAACAGGTTGGAACAGGTGATGAATGCGATGAGGAGGAAGTCTCAGACTTTGAAATGGAAGGATCTGATGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

428

Amino Acids

49.58

Weight (kDa)

8.96

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 40 - 371 2.5e-118 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 287
Acc36I ACCTGC 1 cut(s) 279
Acc65I GGTACC 1 cut(s) 291
AccB1I GGYRCC 1 cut(s) 291
AccII CGCG 2 cut(s) 589, 1125
AciI CCGC 6 cut(s) 106, 171, 222, 1061, 1067, 1125
AclWI GGATC 5 cut(s) 195, 507, 815, 926, 1279
AcsI RAATTY 1 cut(s) 311
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 2 cut(s) 293, 545
AfeI AGCGCT 1 cut(s) 1023
AfiI CCNNNNNNNGG 3 cut(s) 115, 210, 579
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 7 cut(s) 308, 493, 595, 685, 937, 1000, 1262
AluBI AGCT 6 cut(s) 8, 58, 132, 250, 879, 1051
AluI AGCT 6 cut(s) 8, 58, 132, 250, 879, 1051
Alw26I GTCTC 4 cut(s) 149, 182, 1152, 1255
AlwI GGATC 5 cut(s) 195, 507, 815, 926, 1279
AlwNI CAGNNNCTG 1 cut(s) 362
Aor51HI AGCGCT 1 cut(s) 1023
AoxI GGCC 2 cut(s) 256, 570
ApoI RAATTY 1 cut(s) 311
Asp700I GAANNNNTTC 1 cut(s) 8
Asp718I GGTACC 1 cut(s) 291
AspLEI GCGC 3 cut(s) 288, 742, 1024
AspS9I GGNCC 2 cut(s) 103, 256
AsuC2I CCSGG 2 cut(s) 548, 978
AsuHPI GGTGA 5 cut(s) 211, 253, 668, 763, 1238
AvaII GGWCC 1 cut(s) 103
BanI GGYRCC 1 cut(s) 291
BarI GAAGNNNNNNTAC 2 cut(s) 770, 802
BbsI GAAGAC 1 cut(s) 902
BccI CCATC 4 cut(s) 200, 509, 572, 757
BceAI ACGGC 1 cut(s) 781
BciVI GTATCC 2 cut(s) 495, 984
BcnI CCSGG 2 cut(s) 548, 978
BcoDI GTCTC 4 cut(s) 149, 182, 1152, 1255
BfaI CTAG 3 cut(s) 374, 810, 1052
BfmI CTRYAG 1 cut(s) 473
BfoI RGCGCY 1 cut(s) 1025
BfuAI ACCTGC 1 cut(s) 279
BfuI GTATCC 2 cut(s) 495, 984
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
Bme1390I CCNGG 2 cut(s) 548, 978
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 103, 256
BmiI GGNNCC 3 cut(s) 215, 293, 537
BmrFI CCNGG 2 cut(s) 548, 978
BmrI ACTGGG 1 cut(s) 219
BmsI GCATC 2 cut(s) 99, 1072
BmuI ACTGGG 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 902
BplI GAGNNNNNCTC 4 cut(s) 454, 486, 1235, 1267
Bpu10I CCTNAGC 1 cut(s) 1025
BpuEI CTTGAG 2 cut(s) 167, 934
BpuMI CCSGG 2 cut(s) 548, 978
BsaHI GRCGYC 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 5 cut(s) 99, 573, 725, 977, 1014
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 210, 579
Bse1I ACTGG 2 cut(s) 174, 214
Bse3DI GCAATG 1 cut(s) 632
BseDI CCNNGG 5 cut(s) 99, 573, 725, 977, 1014
BseGI GGATG 4 cut(s) 583, 673, 768, 1063
BseLI CCNNNNNNNGG 3 cut(s) 115, 210, 579
BseMI GCAATG 1 cut(s) 632
BseMII CTCAG 4 cut(s) 1039, 1163, 1194, 1266
BseNI ACTGG 2 cut(s) 174, 214
BseRI GAGGAG 6 cut(s) 170, 655, 782, 944, 1220, 1256
BsgI GTGCAG 1 cut(s) 348
Bsh1236I CGCG 2 cut(s) 589, 1125
BshFI GGCC 2 cut(s) 258, 572
BshNI GGYRCC 1 cut(s) 291
BsiSI CCGG 2 cut(s) 548, 977
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 3 cut(s) 115, 210, 579
BsmAI GTCTC 4 cut(s) 149, 182, 1152, 1255
BsmFI GGGAC 1 cut(s) 251
BsmI GAATGC 1 cut(s) 1238
BsnI GGCC 2 cut(s) 258, 572
Bso31I GGTCTC 1 cut(s) 149
Bsp143I GATC 7 cut(s) 160, 200, 499, 820, 832, 918, 1271
BspACI CCGC 6 cut(s) 106, 171, 222, 1061, 1067, 1125
BspANI GGCC 2 cut(s) 258, 572
BspCNI CTCAG 4 cut(s) 1038, 1162, 1195, 1265
BspFNI CGCG 2 cut(s) 589, 1125
BspLI GGNNCC 3 cut(s) 215, 293, 537
BspMAI CTGCAG 1 cut(s) 477
BspMI ACCTGC 1 cut(s) 279
BspPI GGATC 5 cut(s) 195, 507, 815, 926, 1279
BspT107I GGYRCC 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 632
BsrI ACTGG 2 cut(s) 174, 214
BssECI CCNNGG 5 cut(s) 99, 573, 725, 977, 1014
BssMI GATC 7 cut(s) 160, 200, 499, 820, 832, 918, 1271
BssNI GRCGYC 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 99
Bst4CI ACNGT 4 cut(s) 265, 421, 700, 1018
Bst6I CTCTTC 1 cut(s) 20
BstACI GRCGYC 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 1071
BstDEI CTNAG 6 cut(s) 133, 431, 1025, 1149, 1203, 1252
BstDSI CCRYGG 1 cut(s) 1014
BstEII GGTNACC 1 cut(s) 1034
BstF5I GGATG 4 cut(s) 583, 673, 768, 1063
BstFNI CGCG 2 cut(s) 589, 1125
BstH2I RGCGCY 1 cut(s) 1025
BstHHI GCGC 3 cut(s) 288, 742, 1024
BstKTI GATC 7 cut(s) 163, 203, 502, 823, 835, 921, 1274
BstMAI GTCTC 4 cut(s) 149, 182, 1152, 1255
BstMBI GATC 7 cut(s) 160, 200, 499, 820, 832, 918, 1271
BstMWI GCNNNNNNNGC 2 cut(s) 629, 1150
BstNSI RCATGY 1 cut(s) 323
BstPI GGTNACC 1 cut(s) 1034
BstSCI CCNGG 2 cut(s) 546, 976
BstSFI CTRYAG 1 cut(s) 473
BstUI CGCG 2 cut(s) 589, 1125
BstV2I GAAGAC 1 cut(s) 902
BstX2I RGATCY 2 cut(s) 499, 1271
BstYI RGATCY 2 cut(s) 499, 1271
BsuI GTATCC 2 cut(s) 495, 984
BsuRI GGCC 2 cut(s) 258, 572
BtgI CCRYGG 1 cut(s) 1014
BtgZI GCGATG 2 cut(s) 79, 1251
BtsCI GGATG 4 cut(s) 583, 673, 768, 1063
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 2 cut(s) 360, 417
BveI ACCTGC 1 cut(s) 279
Cac8I GCNNGC 1 cut(s) 1071
CaiI CAGNNNCTG 1 cut(s) 362
CfoI GCGC 3 cut(s) 288, 742, 1024
Cfr13I GGNCC 2 cut(s) 103, 256
CseI GACGC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 292, 544
CviAII CATG 6 cut(s) 283, 320, 407, 759, 866, 1097
CviQI GTAC 2 cut(s) 292, 544
DdeI CTNAG 6 cut(s) 133, 431, 1025, 1149, 1203, 1252
DpnI GATC 7 cut(s) 162, 202, 501, 822, 834, 920, 1273
DpnII GATC 7 cut(s) 160, 200, 499, 820, 832, 918, 1271
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
EciI GGCGGA 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 99
Eco147I AGGCCT 1 cut(s) 572
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 103
Eco47III AGCGCT 1 cut(s) 1023
Eco91I GGTNACC 1 cut(s) 1034
EcoO65I GGTNACC 1 cut(s) 1034
EcoRI GAATTC 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 6 cut(s) 286, 323, 410, 762, 869, 1100
FaqI GGGAC 1 cut(s) 251
FatI CATG 6 cut(s) 282, 319, 406, 758, 865, 1096
FauI CCCGC 1 cut(s) 1068
Fnu4HI GCNGC 1 cut(s) 171
FokI GGATG 4 cut(s) 590, 680, 775, 1050
Fsp4HI GCNGC 1 cut(s) 171
FspBI CTAG 3 cut(s) 374, 810, 1052
FspI TGCGCA 1 cut(s) 287
GlaI GCGC 3 cut(s) 287, 741, 1023
GluI GCNGC 1 cut(s) 171
HaeII RGCGCY 1 cut(s) 1025
HaeIII GGCC 2 cut(s) 258, 572
HapII CCGG 2 cut(s) 548, 977
HgaI GACGC 1 cut(s) 197
HhaI GCGC 3 cut(s) 288, 742, 1024
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 6 cut(s) 286, 323, 410, 762, 869, 1100
Hin6I GCGC 3 cut(s) 286, 740, 1022
HinP1I GCGC 3 cut(s) 286, 740, 1022
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HindIII AAGCTT 3 cut(s) 6, 130, 248
HinfI GANTC 6 cut(s) 279, 377, 806, 937, 960, 1199
HpaI GTTAAC 1 cut(s) 354
HpaII CCGG 2 cut(s) 548, 977
HphI GGTGA 5 cut(s) 211, 253, 668, 763, 1238
Hpy166II GTNNAC 3 cut(s) 354, 954, 1057
Hpy188I TCNGA 8 cut(s) 278, 444, 577, 726, 777, 1204, 1255, 1276
Hpy188III TCNNGA 5 cut(s) 121, 308, 611, 685, 1193
Hpy8I GTNNAC 3 cut(s) 354, 954, 1057
HpyAV CCTTC 5 cut(s) 241, 589, 742, 1025, 1262
HpyCH4III ACNGT 4 cut(s) 265, 421, 700, 1018
HpyCH4IV ACGT 1 cut(s) 1075
HpyCH4V TGCA 5 cut(s) 365, 475, 637, 865, 1073
HpyF10VI GCNNNNNNNGC 2 cut(s) 629, 1150
HpyF3I CTNAG 6 cut(s) 133, 431, 1025, 1149, 1203, 1252
HpySE526I ACGT 1 cut(s) 1075
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 6 cut(s) 286, 323, 410, 762, 869, 1100
HspAI GCGC 3 cut(s) 286, 740, 1022
KpnI GGTACC 1 cut(s) 295
KspAI GTTAAC 1 cut(s) 354
Kzo9I GATC 7 cut(s) 160, 200, 499, 820, 832, 918, 1271
LmnI GCTCC 1 cut(s) 63
LweI GCATC 2 cut(s) 99, 1072
MaeI CTAG 3 cut(s) 374, 810, 1052
MaeII ACGT 1 cut(s) 1075
MaeIII GTNAC 3 cut(s) 413, 583, 1034
MalI GATC 7 cut(s) 162, 202, 501, 822, 834, 920, 1273
MboI GATC 7 cut(s) 160, 200, 499, 820, 832, 918, 1271
MboII GAAGA 5 cut(s) 7, 757, 907, 932, 955
MflI RGATCY 2 cut(s) 499, 1271
MluCI AATT 1 cut(s) 311
MlyI GAGTC 2 cut(s) 371, 1193
MmeI TCCRAC 2 cut(s) 835, 1198
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 3 cut(s) 348, 353, 567
MslI CAYNNNNRTG 2 cut(s) 411, 1000
MspI CCGG 2 cut(s) 548, 977
MspR9I CCNGG 2 cut(s) 548, 978
Mva1269I GAATGC 1 cut(s) 1238
MvnI CGCG 2 cut(s) 589, 1125
MwoI GCNNNNNNNGC 2 cut(s) 629, 1150
NciI CCSGG 2 cut(s) 548, 978
NdeII GATC 7 cut(s) 160, 200, 499, 820, 832, 918, 1271
NlaIII CATG 6 cut(s) 286, 323, 410, 762, 869, 1100
NlaIV GGNNCC 3 cut(s) 215, 293, 537
NmuCI GTSAC 1 cut(s) 413
NsbI TGCGCA 1 cut(s) 287
NspI RCATGY 1 cut(s) 323
PceI AGGCCT 1 cut(s) 572
PciI ACATGT 1 cut(s) 319
PctI GAATGC 1 cut(s) 1238
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 4 cut(s) 279, 806, 937, 960
PkrI GCNGC 1 cut(s) 172
PleI GAGTC 2 cut(s) 371, 1193
PpsI GAGTC 2 cut(s) 371, 1193
PscI ACATGT 1 cut(s) 319
PspEI GGTNACC 1 cut(s) 1034
PspN4I GGNNCC 3 cut(s) 215, 293, 537
PspPI GGNCC 2 cut(s) 103, 256
PsrI GAACNNNNNNTAC 4 cut(s) 378, 410, 665, 697
PstI CTGCAG 1 cut(s) 477
PstNI CAGNNNCTG 1 cut(s) 362
PsuI RGATCY 2 cut(s) 499, 1271
RsaI GTAC 2 cut(s) 293, 545
RsaNI GTAC 2 cut(s) 292, 544
RseI CAYNNNNRTG 2 cut(s) 411, 1000
SaqAI TTAA 3 cut(s) 348, 353, 567
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 7 cut(s) 160, 200, 499, 820, 832, 918, 1271
Sau96I GGNCC 2 cut(s) 103, 256
SchI GAGTC 2 cut(s) 371, 1193
ScrFI CCNGG 2 cut(s) 548, 978
SfaNI GCATC 2 cut(s) 99, 1072
SfcI CTRYAG 1 cut(s) 473
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 2 cut(s) 411, 1000
SmlI CTYRAG 2 cut(s) 182, 913
SmoI CTYRAG 2 cut(s) 182, 913
Sse9I AATT 1 cut(s) 311
SseBI AGGCCT 1 cut(s) 572
SsiI CCGC 6 cut(s) 106, 171, 222, 1061, 1067, 1125
SspMI CTAG 3 cut(s) 374, 810, 1052
StuI AGGCCT 1 cut(s) 572
StyD4I CCNGG 2 cut(s) 546, 976
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 4 cut(s) 265, 421, 700, 1018
TaiI ACGT 1 cut(s) 1078
TaqI TCGA 3 cut(s) 85, 147, 559
TaqII GACCGA 1 cut(s) 173
TasI AATT 1 cut(s) 311
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 4 cut(s) 279, 806, 937, 960
Tru1I TTAA 3 cut(s) 348, 353, 567
Tru9I TTAA 3 cut(s) 348, 353, 567
TscAI CASTG 2 cut(s) 367, 424
TseFI GTSAC 1 cut(s) 413
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 6 cut(s) 17, 271, 467, 878, 984, 1245
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 2 cut(s) 367, 424
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 1 cut(s) 311
XceI RCATGY 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 3 cut(s) 374, 810, 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.