Rroxscaffold_7G00193120

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000591
Physical Location & Seq
Reverse (-)
34484874 .. 34487454
2581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00193120.1

Sequence Viewer

Length: 522 bp
ATGTCCGAATGTTTAAAAGGAAACAAGATCTTCCAAGAAGAGCCACCTGCTGGCGTATTGAAATTAAATGTGGATGGCTCTTTTGTCAATGCTACCGCATCTGCTGGGTTAGGAGGCACTTTAAGAGACGCCGAAGGCTCCTTTTTAGGAGGCTTCTTTCACTTTGTGGAGGATGTCCACAGTTCTAAACAGGCTGAACTTTTAGCTTGTCTCTATGTAGCCAGAATAGCGCTTGAGAAAGGCTGGAGACCTTTGATCATTGAGTCAGATTGCTTGGAAGTTGTGAAGGAGGTTAACTCCTCTAGTGACTGTTTATCTATGCTGGGGGTCCTAGTGGAAGATCTGAGAGAGGTCTTGGTGCTTTTGTCTTCAGCCAGGTTGGTTCATACTAGGAGGCCAGCTAATCAAGTAGCTCAGATTTTAGCACAGGAGGCTTATCAGTTACAGGATCTTTCCATTTTTTTGGAAGTTGCTCCTCTGTCTGTGAAGTATGCTGTGAACTATGATTGTAATGATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

173

Amino Acids

18.87

Weight (kDa)

4.76

Isoelectric Point (pI)

55.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 23 - 145 2.2e-22 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 55
Acc36I ACCTGC 1 cut(s) 55
AccB7I CCANNNNNTGG 1 cut(s) 50
AciI CCGC 1 cut(s) 96
AclWI GGATC 1 cut(s) 456
AcuI CTGAAG 1 cut(s) 354
AcyI GRCGYC 1 cut(s) 129
AdeI CACNNNGTG 1 cut(s) 166
AfeI AGCGCT 1 cut(s) 231
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 1 cut(s) 61
AjnI CCWGG 1 cut(s) 374
AluBI AGCT 3 cut(s) 206, 401, 413
AluI AGCT 3 cut(s) 206, 401, 413
Alw26I GTCTC 3 cut(s) 120, 215, 241
AlwI GGATC 1 cut(s) 456
Aor51HI AGCGCT 1 cut(s) 231
AoxI GGCC 1 cut(s) 395
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 328
AvaII GGWCC 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 360
BccI CCATC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 376
BclI TGATCA 1 cut(s) 255
BcoDI GTCTC 3 cut(s) 120, 215, 241
BfaI CTAG 3 cut(s) 303, 332, 390
BfoI RGCGCY 1 cut(s) 233
BfuAI ACCTGC 1 cut(s) 55
BglII AGATCT 2 cut(s) 27, 340
Bme1390I CCNGG 1 cut(s) 376
Bme18I GGWCC 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 2 cut(s) 139, 329
BmrFI CCNGG 1 cut(s) 376
BmsI GCATC 1 cut(s) 107
BpiI GAAGAC 1 cut(s) 360
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpmI CTGGAG 1 cut(s) 265
BpuEI CTTGAG 1 cut(s) 254
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 241
Bsc4I CCNNNNNNNGG 1 cut(s) 50
BseBI CCWGG 1 cut(s) 376
BseGI GGATG 2 cut(s) 79, 178
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMII CTCAG 2 cut(s) 335, 428
BseRI GAGGAG 2 cut(s) 289, 465
BseYI CCCAGC 2 cut(s) 104, 322
BshFI GGCC 1 cut(s) 397
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 3 cut(s) 120, 215, 241
BsmBI CGTCTC 1 cut(s) 120
BsnI GGCC 1 cut(s) 397
Bso31I GGTCTC 1 cut(s) 241
Bsp143I GATC 5 cut(s) 27, 255, 340, 448, 514
BspACI CCGC 1 cut(s) 96
BspANI GGCC 1 cut(s) 397
BspCNI CTCAG 2 cut(s) 336, 427
BspLI GGNNCC 2 cut(s) 139, 329
BspMI ACCTGC 1 cut(s) 55
BspPI GGATC 1 cut(s) 456
BspQI GCTCTTC 1 cut(s) 33
BspTNI GGTCTC 1 cut(s) 241
BssMI GATC 5 cut(s) 27, 255, 340, 448, 514
BssNI GRCGYC 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 2 cut(s) 182, 311
Bst6I CTCTTC 1 cut(s) 33
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 2 cut(s) 52, 399
BstDEI CTNAG 2 cut(s) 344, 414
BstF5I GGATG 2 cut(s) 79, 178
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 5 cut(s) 30, 258, 343, 451, 517
BstMAI GTCTC 3 cut(s) 120, 215, 241
BstMBI GATC 5 cut(s) 27, 255, 340, 448, 514
BstMWI GCNNNNNNNGC 2 cut(s) 227, 431
BstNI CCWGG 1 cut(s) 376
BstSCI CCNGG 1 cut(s) 374
BstV2I GAAGAC 1 cut(s) 360
BstX2I RGATCY 3 cut(s) 27, 340, 448
BstXI CCANNNNNNTGG 1 cut(s) 463
BstYI RGATCY 3 cut(s) 27, 340, 448
BsuRI GGCC 1 cut(s) 397
BtsCI GGATG 2 cut(s) 79, 178
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 2 cut(s) 52, 399
CfoI GCGC 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 328
CseI GACGC 1 cut(s) 137
DdeI CTNAG 2 cut(s) 344, 414
DpnI GATC 5 cut(s) 29, 257, 342, 450, 516
DpnII GATC 5 cut(s) 27, 255, 340, 448, 514
DraI TTTAAA 1 cut(s) 15
DraIII CACNNNGTG 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 328
Eco47III AGCGCT 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 374
Esp3I CGTCTC 1 cut(s) 120
FaiI YATR 5 cut(s) 216, 320, 387, 492, 504
FbaI TGATCA 1 cut(s) 255
FokI GGATG 2 cut(s) 86, 185
FspBI CTAG 3 cut(s) 303, 332, 390
GlaI GCGC 1 cut(s) 231
GsaI CCCAGC 2 cut(s) 108, 326
GsuI CTGGAG 1 cut(s) 265
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 1 cut(s) 397
HgaI GACGC 1 cut(s) 137
HhaI GCGC 1 cut(s) 232
Hin1I GRCGYC 1 cut(s) 129
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 1 cut(s) 263
HpaI GTTAAC 1 cut(s) 295
Hpy166II GTNNAC 3 cut(s) 178, 295, 499
Hpy188I TCNGA 4 cut(s) 7, 268, 345, 417
Hpy8I GTNNAC 3 cut(s) 178, 295, 499
HpyAV CCTTC 2 cut(s) 128, 280
HpyCH4III ACNGT 2 cut(s) 182, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 431
HpyF3I CTNAG 2 cut(s) 344, 414
Hsp92I GRCGYC 1 cut(s) 129
HspAI GCGC 1 cut(s) 230
Ksp22I TGATCA 1 cut(s) 255
KspAI GTTAAC 1 cut(s) 295
Kzo9I GATC 5 cut(s) 27, 255, 340, 448, 514
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 2 cut(s) 143, 478
LweI GCATC 1 cut(s) 107
MaeI CTAG 3 cut(s) 303, 332, 390
MaeIII GTNAC 2 cut(s) 305, 441
MalI GATC 5 cut(s) 29, 257, 342, 450, 516
MboI GATC 5 cut(s) 27, 255, 340, 448, 514
MboII GAAGA 4 cut(s) 22, 50, 350, 360
MflI RGATCY 3 cut(s) 27, 340, 448
MluCI AATT 1 cut(s) 62
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 9 cut(s) 107, 143, 163, 283, 310, 343, 387, 424, 486
MseI TTAA 4 cut(s) 14, 65, 122, 294
MspR9I CCNGG 1 cut(s) 376
MvaI CCWGG 1 cut(s) 376
MwoI GCNNNNNNNGC 2 cut(s) 227, 431
NdeII GATC 5 cut(s) 27, 255, 340, 448, 514
NlaIV GGNNCC 2 cut(s) 139, 329
NmuCI GTSAC 1 cut(s) 305
PaqCI CACCTGC 1 cut(s) 55
PciSI GCTCTTC 1 cut(s) 33
PflMI CCANNNNNTGG 1 cut(s) 50
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PpuMI RGGWCCY 1 cut(s) 328
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 374
PspFI CCCAGC 2 cut(s) 104, 322
PspGI CCWGG 1 cut(s) 374
PspN4I GGNNCC 2 cut(s) 139, 329
PspPI GGNCC 1 cut(s) 328
PspPPI RGGWCCY 1 cut(s) 328
PsuI RGATCY 3 cut(s) 27, 340, 448
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 4 cut(s) 14, 65, 122, 294
Sau3AI GATC 5 cut(s) 27, 255, 340, 448, 514
Sau96I GGNCC 1 cut(s) 328
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 376
SetI ASST 8 cut(s) 49, 208, 253, 294, 354, 380, 403, 415
SfaNI GCATC 1 cut(s) 107
SinI GGWCC 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 1 cut(s) 62
SsiI CCGC 1 cut(s) 96
SspMI CTAG 3 cut(s) 303, 332, 390
StyD4I CCNGG 1 cut(s) 374
TaaI ACNGT 2 cut(s) 182, 311
TasI AATT 1 cut(s) 62
Tru1I TTAA 4 cut(s) 14, 65, 122, 294
Tru9I TTAA 4 cut(s) 14, 65, 122, 294
TseFI GTSAC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 1 cut(s) 374
Van91I CCANNNNNTGG 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 328
XspI CTAG 3 cut(s) 303, 332, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.