Rmu_sc0000795.1_g000006

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000795.1
OG0000591
Physical Location & Seq
Forward (+)
19524 .. 20170
647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000795.1_g000006.1.cds

Sequence Viewer

Length: 495 bp
atgttgatttgggatacttggcgcaaccgcaatgacaaagtacggagccatgctcctagattggcttcggaggttgttcccatgaccttaggttggtacgaagaatacaaagttgcaaatttttcaccccaggcttcaacaacaatgttgaatgtgagatggagtaaacccccagtggggatggttaaattaaatgtggatggtgccttttgtaatgcaaatgggaaggcagggcttggaggtattttttgggactttgaggcggtgacaaaccaagcccttgatcaatctgatctaggttttcttatccatgatcttagggagcttctacatgcagcgccttctactcaggtttgctatgtgaggcgccaggcaaacttggtggcacataggttagctcaagaagcgaagcagtcttcgttttctctgaatttgtttcatttccctcctccaagtgtggaggagattataaaccttgattgtaacgaccattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

164

Amino Acids

18.52

Weight (kDa)

6.28

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 470
AccB1I GGYRCC 2 cut(s) 203, 366
AciI CCGC 2 cut(s) 28, 263
AcsI RAATTY 2 cut(s) 118, 430
AcyI GRCGYC 1 cut(s) 367
AfaI GTAC 2 cut(s) 42, 98
AfiI CCNNNNNNNGG 3 cut(s) 93, 176, 177
AgsI TTSAA 2 cut(s) 138, 151
AjnI CCWGG 2 cut(s) 129, 369
AluBI AGCT 2 cut(s) 325, 398
AluI AGCT 2 cut(s) 325, 398
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 2 cut(s) 118, 430
AspLEI GCGC 3 cut(s) 24, 340, 369
AsuHPI GGTGA 2 cut(s) 117, 277
AxyI CCTNAGG 1 cut(s) 88
BanI GGYRCC 2 cut(s) 203, 366
BbsI GAAGAC 1 cut(s) 408
BbvI GCAGC 1 cut(s) 347
BccI CCATC 3 cut(s) 153, 175, 194
BciT130I CCWGG 2 cut(s) 131, 371
BciVI GTATCC 1 cut(s) 7
BclI TGATCA 1 cut(s) 283
BfaI CTAG 2 cut(s) 57, 296
BfoI RGCGCY 2 cut(s) 341, 370
BfuI GTATCC 1 cut(s) 7
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme1390I CCNGG 2 cut(s) 131, 371
BmiI GGNNCC 3 cut(s) 47, 205, 368
BmrFI CCNGG 2 cut(s) 131, 371
BmrI ACTGGG 1 cut(s) 167
BmuI ACTGGG 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 408
BplI GAGNNNNNCTC 2 cut(s) 37, 69
BpuEI CTTGAG 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 367
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 3 cut(s) 93, 176, 177
Bse1I ACTGG 1 cut(s) 173
Bse21I CCTNAGG 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 37
BseBI CCWGG 2 cut(s) 131, 371
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 2 cut(s) 186, 205
BseLI CCNNNNNNNGG 3 cut(s) 93, 176, 177
BseMI GCAATG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 1 cut(s) 173
BseRI GAGGAG 2 cut(s) 438, 476
BseXI GCAGC 1 cut(s) 347
BshNI GGYRCC 2 cut(s) 203, 366
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 3 cut(s) 93, 176, 177
BsmFI GGGAC 1 cut(s) 266
Bsp143I GATC 3 cut(s) 283, 292, 313
BspACI CCGC 2 cut(s) 28, 263
BspCNI CTCAG 1 cut(s) 361
BspLI GGNNCC 3 cut(s) 47, 205, 368
BspT107I GGYRCC 2 cut(s) 203, 366
BsrDI GCAATG 1 cut(s) 37
BsrI ACTGG 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 3 cut(s) 283, 292, 313
BssNI GRCGYC 1 cut(s) 367
Bst2UI CCWGG 2 cut(s) 131, 371
BstACI GRCGYC 1 cut(s) 367
BstDEI CTNAG 3 cut(s) 88, 317, 348
BstF5I GGATG 2 cut(s) 186, 205
BstH2I RGCGCY 2 cut(s) 341, 370
BstHHI GCGC 3 cut(s) 24, 340, 369
BstKTI GATC 3 cut(s) 286, 295, 316
BstMBI GATC 3 cut(s) 283, 292, 313
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNI CCWGG 2 cut(s) 131, 371
BstNSI RCATGY 1 cut(s) 335
BstSCI CCNGG 2 cut(s) 129, 369
BstV1I GCAGC 1 cut(s) 347
BstV2I GAAGAC 1 cut(s) 408
Bsu36I CCTNAGG 1 cut(s) 88
BsuI GTATCC 1 cut(s) 7
BtsCI GGATG 2 cut(s) 186, 205
BtsIMutI CAGTG 1 cut(s) 180
CfoI GCGC 3 cut(s) 24, 340, 369
Csp6I GTAC 2 cut(s) 41, 97
CspCI CAANNNNNGTGG 2 cut(s) 363, 398
CviAII CATG 4 cut(s) 50, 82, 311, 332
CviJI RGCY 7 cut(s) 48, 65, 134, 235, 278, 325, 398
CviKI_1 RGCY 7 cut(s) 48, 65, 134, 235, 278, 325, 398
CviQI GTAC 2 cut(s) 41, 97
DdeI CTNAG 3 cut(s) 88, 317, 348
DinI GGCGCC 1 cut(s) 368
DpnI GATC 3 cut(s) 285, 294, 315
DpnII GATC 3 cut(s) 283, 292, 313
Eco81I CCTNAGG 1 cut(s) 88
EcoRII CCWGG 2 cut(s) 129, 369
EgeI GGCGCC 1 cut(s) 368
EheI GGCGCC 1 cut(s) 368
FaeI CATG 4 cut(s) 53, 85, 314, 335
FaiI YATR 7 cut(s) 51, 83, 312, 333, 360, 390, 470
FaqI GGGAC 1 cut(s) 266
FatI CATG 4 cut(s) 49, 81, 310, 331
FbaI TGATCA 1 cut(s) 283
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 2 cut(s) 193, 212
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 2 cut(s) 57, 296
GlaI GCGC 3 cut(s) 23, 339, 368
GluI GCNGC 1 cut(s) 336
HaeII RGCGCY 2 cut(s) 341, 370
HhaI GCGC 3 cut(s) 24, 340, 369
Hin1I GRCGYC 1 cut(s) 367
Hin1II CATG 4 cut(s) 53, 85, 314, 335
Hin6I GCGC 3 cut(s) 22, 338, 367
HinP1I GCGC 3 cut(s) 22, 338, 367
HphI GGTGA 2 cut(s) 117, 277
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 3 cut(s) 70, 292, 429
Hpy188III TCNNGA 1 cut(s) 401
Hpy8I GTNNAC 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 220, 351
HpyCH4V TGCA 3 cut(s) 116, 218, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 3 cut(s) 88, 317, 348
Hsp92I GRCGYC 1 cut(s) 367
Hsp92II CATG 4 cut(s) 53, 85, 314, 335
HspAI GCGC 3 cut(s) 22, 338, 367
KasI GGCGCC 1 cut(s) 366
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 3 cut(s) 283, 292, 313
LmnI GCTCC 3 cut(s) 45, 58, 322
LpnPI CCDG 7 cut(s) 116, 143, 186, 216, 335, 356, 383
Lsp1109I GCAGC 1 cut(s) 347
MaeI CTAG 2 cut(s) 57, 296
MaeIII GTNAC 2 cut(s) 265, 482
MalI GATC 3 cut(s) 285, 294, 315
MboI GATC 3 cut(s) 283, 292, 313
MboII GAAGA 2 cut(s) 113, 408
MluCI AATT 3 cut(s) 118, 188, 430
Mly113I GGCGCC 1 cut(s) 367
MnlI CCTC 7 cut(s) 64, 233, 253, 357, 454, 456, 459
MseI TTAA 3 cut(s) 186, 191, 493
MspR9I CCNGG 2 cut(s) 131, 371
MvaI CCWGG 2 cut(s) 131, 371
MwoI GCNNNNNNNGC 1 cut(s) 404
NarI GGCGCC 1 cut(s) 367
NdeII GATC 3 cut(s) 283, 292, 313
NlaIII CATG 4 cut(s) 53, 85, 314, 335
NlaIV GGNNCC 3 cut(s) 47, 205, 368
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 1 cut(s) 335
PkrI GCNGC 1 cut(s) 337
PluTI GGCGCC 1 cut(s) 370
PsiI TTATAA 1 cut(s) 470
Psp6I CCWGG 2 cut(s) 129, 369
PspGI CCWGG 2 cut(s) 129, 369
PspN4I GGNNCC 3 cut(s) 47, 205, 368
RsaI GTAC 2 cut(s) 42, 98
RsaNI GTAC 2 cut(s) 41, 97
SaqAI TTAA 3 cut(s) 186, 191, 493
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 3 cut(s) 283, 292, 313
ScrFI CCNGG 2 cut(s) 131, 371
SfoI GGCGCC 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 3 cut(s) 118, 188, 430
SsiI CCGC 2 cut(s) 28, 263
SspDI GGCGCC 1 cut(s) 366
SspMI CTAG 2 cut(s) 57, 296
StyD4I CCNGG 2 cut(s) 129, 369
TasI AATT 3 cut(s) 118, 188, 430
Tru1I TTAA 3 cut(s) 186, 191, 493
Tru9I TTAA 3 cut(s) 186, 191, 493
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 1 cut(s) 428
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 1 cut(s) 180
XapI RAATTY 2 cut(s) 118, 430
XceI RCATGY 1 cut(s) 335
XspI CTAG 2 cut(s) 57, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.