RLG00000002966

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000591
Physical Location & Seq
Reverse (-)
42394315 .. 42395392
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002966

Sequence Viewer

Length: 402 bp
ATGGTTGCGGGGATCGCGAGGGTTACAGGGGATTGGTTGGATGTCATGAGGCTGAGTCGTCGGAACAATCTGGTGTTGCCATCATCGTCGTCAGTTTCCACCGGTGACAGAAGGTGGAGGAGGGTCGCAAGAACTAGATCATGCGCTCGAGGTGGGATTGATGGTGATGGGTGGTCTGGTTTGAGGTTGCAGGTGCGGGACTTGGGTTCACCCCAGAGCTTTTCCGGCTTGTTTGGTGGTTGTGCGCTGGTGGTTGTTAGGGTCAGCACGGTGTCGCTGCGTTGGCTCTTGCACGCCGGGGTTAGTGCGACAGCAGTAATGGAAGGACGAGGGAGGCGCTATTGGGTTGATGTCGCGACGACGGCGGTCTTGCAGGCTAAAGCTGACTATATAATAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.48

Weight (kDa)

11.33

Isoelectric Point (pI)

65.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 181
Acc36I ACCTGC 1 cut(s) 181
AccII CGCG 2 cut(s) 17, 356
AciI CCGC 3 cut(s) 8, 196, 365
AclWI GGATC 1 cut(s) 20
AgeI ACCGGT 1 cut(s) 101
AluBI AGCT 2 cut(s) 219, 383
AluI AGCT 2 cut(s) 219, 383
AlwI GGATC 1 cut(s) 20
Ama87I CYCGRG 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 277
AsiGI ACCGGT 1 cut(s) 101
AspLEI GCGC 3 cut(s) 146, 247, 339
AsuC2I CCSGG 1 cut(s) 298
AsuHPI GGTGA 3 cut(s) 116, 176, 201
AvaI CYCGRG 1 cut(s) 147
BbvI GCAGC 1 cut(s) 264
BccI CCATC 3 cut(s) 88, 155, 161
BceAI ACGGC 1 cut(s) 378
BcnI CCSGG 1 cut(s) 298
BfaI CTAG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 340
BfuAI ACCTGC 1 cut(s) 181
BisI GCNGC 1 cut(s) 278
BlsI GCNGC 1 cut(s) 279
Bme1390I CCNGG 1 cut(s) 298
BmeT110I CYCGRG 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 298
BoxI GACNNNNGTC 1 cut(s) 365
BpuMI CCSGG 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 101
Bse118I RCCGGY 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 44
BseRI GAGGAG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 264
Bsh1236I CGCG 2 cut(s) 17, 356
BshTI ACCGGT 1 cut(s) 101
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 3 cut(s) 102, 225, 297
BslFI GGGAC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 212
BsoBI CYCGRG 1 cut(s) 147
Bsp143I GATC 2 cut(s) 12, 137
Bsp68I TCGCGA 2 cut(s) 17, 356
BspACI CCGC 3 cut(s) 8, 196, 365
BspCNI CTCAG 1 cut(s) 45
BspFNI CGCG 2 cut(s) 17, 356
BspHI TCATGA 1 cut(s) 45
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 2 cut(s) 12, 137
Bst4CI ACNGT 1 cut(s) 271
BstC8I GCNNGC 2 cut(s) 294, 375
BstDEI CTNAG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 46
BstFNI CGCG 2 cut(s) 17, 356
BstH2I RGCGCY 1 cut(s) 340
BstHHI GCGC 3 cut(s) 146, 247, 339
BstKTI GATC 2 cut(s) 15, 140
BstMBI GATC 2 cut(s) 12, 137
BstMWI GCNNNNNNNGC 4 cut(s) 14, 225, 283, 362
BstPAI GACNNNNGTC 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 296
BstUI CGCG 2 cut(s) 17, 356
BstV1I GCAGC 1 cut(s) 264
BtsCI GGATG 1 cut(s) 46
BtuMI TCGCGA 2 cut(s) 17, 356
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 2 cut(s) 294, 375
CciI TCATGA 1 cut(s) 45
CfoI GCGC 3 cut(s) 146, 247, 339
Cfr10I RCCGGY 1 cut(s) 101
CspAI ACCGGT 1 cut(s) 101
CviAII CATG 2 cut(s) 46, 141
CviJI RGCY 6 cut(s) 52, 219, 228, 286, 377, 383
CviKI_1 RGCY 6 cut(s) 52, 219, 228, 286, 377, 383
DdeI CTNAG 1 cut(s) 53
DpnI GATC 2 cut(s) 14, 139
DpnII GATC 2 cut(s) 12, 137
Eco88I CYCGRG 1 cut(s) 147
FaeI CATG 2 cut(s) 49, 144
FaiI YATR 4 cut(s) 47, 142, 390, 392
FaqI GGGAC 1 cut(s) 212
FatI CATG 2 cut(s) 45, 140
FauI CCCGC 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 278
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 278
FspBI CTAG 1 cut(s) 135
GlaI GCGC 3 cut(s) 145, 246, 338
GluI GCNGC 1 cut(s) 278
HaeII RGCGCY 1 cut(s) 340
HapII CCGG 3 cut(s) 102, 225, 297
HhaI GCGC 3 cut(s) 146, 247, 339
Hin1II CATG 2 cut(s) 49, 144
Hin6I GCGC 3 cut(s) 144, 245, 337
HinP1I GCGC 3 cut(s) 144, 245, 337
HinfI GANTC 1 cut(s) 55
HpaII CCGG 3 cut(s) 102, 225, 297
HphI GGTGA 3 cut(s) 116, 176, 201
Hpy166II GTNNAC 1 cut(s) 209
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 3 cut(s) 16, 46, 355
Hpy8I GTNNAC 1 cut(s) 209
Hpy99I CGWCG 4 cut(s) 63, 91, 361, 364
HpyAV CCTTC 2 cut(s) 105, 317
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4V TGCA 3 cut(s) 190, 292, 373
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 225, 283, 362
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 2 cut(s) 49, 144
HspAI GCGC 3 cut(s) 144, 245, 337
Kzo9I GATC 2 cut(s) 12, 137
Lsp1109I GCAGC 1 cut(s) 264
MaeI CTAG 1 cut(s) 135
MaeIII GTNAC 2 cut(s) 22, 104
MalI GATC 2 cut(s) 14, 139
MboI GATC 2 cut(s) 12, 137
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 2 cut(s) 18, 41
MnlI CCTC 8 cut(s) 12, 42, 111, 114, 143, 177, 323, 327
MspI CCGG 3 cut(s) 102, 225, 297
MspR9I CCNGG 1 cut(s) 298
MvnI CGCG 2 cut(s) 17, 356
MwoI GCNNNNNNNGC 4 cut(s) 14, 225, 283, 362
NciI CCSGG 1 cut(s) 298
NdeII GATC 2 cut(s) 12, 137
NlaIII CATG 2 cut(s) 49, 144
NmuCI GTSAC 1 cut(s) 104
NruI TCGCGA 2 cut(s) 17, 356
PaeR7I CTCGAG 1 cut(s) 147
PagI TCATGA 1 cut(s) 45
PaqCI CACCTGC 1 cut(s) 181
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 1 cut(s) 279
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
PshAI GACNNNNGTC 1 cut(s) 365
PspXI VCTCGAGB 1 cut(s) 147
RruI TCGCGA 2 cut(s) 17, 356
SatI GCNGC 1 cut(s) 278
Sau3AI GATC 2 cut(s) 12, 137
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 298
SetI ASST 6 cut(s) 116, 154, 188, 195, 221, 385
Sfr274I CTCGAG 1 cut(s) 147
SgrAI CRCCGGYG 1 cut(s) 101
SlaI CTCGAG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
SsiI CCGC 3 cut(s) 8, 196, 365
SspMI CTAG 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 296
TaaI ACNGT 1 cut(s) 271
TaqI TCGA 1 cut(s) 148
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 104
XhoI CTCGAG 1 cut(s) 147
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.