Rmu_co8253655.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8253655.1
OG0000591
Physical Location & Seq
Forward (+)
1 .. 748
748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8253655.1_g000001.1.cds

Sequence Viewer

Length: 748 bp
tgctactagtttgattcatggtgccaatattccccttgtttcggccccttccactgtagcagattggctcacagttgtttcagtgacatatcctcatcattttgcctatttgttgatgattttgtgggctacttggaggaatagaaatgctaaagtttggggaggtgattttaagcaggcctccgaggttgtcccaatgtcattgggttggttggcagattttaaagcagcttgcattactacccggttggggttggtagctcgtccagtacccaaatggtcgaaaccactagttggctttgtgaagttgaatgttgacgctgcttttgatcagaccttgtgtcgtacagatttaggtggggtgttccgaaatcatgtagggaattttcttcatgggtttcgacattctgttacaattgctcaatcagctagacatgccgagctcaatcagctggccattgataatcatcttacacctttgatggtggagtcggactgcctggacttggtgtcaacattgtcctcatcttcattggattgttcggagctgggttttttgttggtagacttgcgtgctttgttacatgaagcattggatgctcgtgtgcttaaggtagctaggcaggccaatagtgtggcccatattttggcgcaggaggccaagcatgatgattttcagatagattatttctcagatattcctccgtctgtggaggctagtttaatcaatgattgtaatgatgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

248

Amino Acids

27.22

Weight (kDa)

5.96

Isoelectric Point (pI)

30.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 21
AccB7I CCANNNNNTGG 2 cut(s) 294, 647
AccI GTMKAC 1 cut(s) 565
AcoI YGGCCR 1 cut(s) 454
AcsI RAATTY 1 cut(s) 383
AfaI GTAC 2 cut(s) 271, 347
AfiI CCNNNNNNNGG 5 cut(s) 41, 250, 294, 506, 647
AflII CTTAAG 1 cut(s) 609
AgsI TTSAA 1 cut(s) 311
AhdI GACNNNNNGTC 2 cut(s) 340, 509
AhlI ACTAGT 2 cut(s) 6, 290
AjnI CCWGG 1 cut(s) 499
AluBI AGCT 7 cut(s) 231, 261, 429, 443, 452, 548, 618
AluI AGCT 7 cut(s) 231, 261, 429, 443, 452, 548, 618
Alw21I GWGCWC 1 cut(s) 445
AoxI GGCC 6 cut(s) 43, 178, 454, 625, 637, 658
ApeKI GCWGC 2 cut(s) 228, 321
ApoI RAATTY 1 cut(s) 383
ArsI GACNNNNNNTTYG 2 cut(s) 309, 341
AspLEI GCGC 1 cut(s) 653
AspS9I GGNCC 2 cut(s) 44, 638
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 177
BalI TGGCCA 1 cut(s) 456
BanI GGYRCC 1 cut(s) 21
BanII GRGCYC 1 cut(s) 445
BauI CACGAG 1 cut(s) 601
Bbv12I GWGCWC 1 cut(s) 445
BbvI GCAGC 2 cut(s) 240, 308
BccI CCATC 1 cut(s) 476
BciT130I CCWGG 1 cut(s) 501
BclI TGATCA 1 cut(s) 329
BcnI CCSGG 1 cut(s) 245
BcuI ACTAGT 2 cut(s) 6, 290
BfaI CTAG 5 cut(s) 7, 291, 430, 619, 718
BfmI CTRYAG 1 cut(s) 55
BfrI CTTAAG 1 cut(s) 609
BisI GCNGC 2 cut(s) 229, 322
BlsI GCNGC 2 cut(s) 230, 323
Bme1390I CCNGG 2 cut(s) 245, 501
BmeRI GACNNNNNGTC 2 cut(s) 340, 509
BmgT120I GGNCC 2 cut(s) 44, 638
BmiI GGNNCC 2 cut(s) 23, 46
BmrFI CCNGG 2 cut(s) 245, 501
BmsI GCATC 2 cut(s) 587, 731
BpuMI CCSGG 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 466
BsaJI CCNNGG 1 cut(s) 184
Bsc4I CCNNNNNNNGG 5 cut(s) 41, 250, 294, 506, 647
Bse1I ACTGG 1 cut(s) 267
Bse8I GATNNNNATC 1 cut(s) 466
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 1 cut(s) 602
BseJI GATNNNNATC 1 cut(s) 466
BseLI CCNNNNNNNGG 5 cut(s) 41, 250, 294, 506, 647
BseMII CTCAG 1 cut(s) 706
BseNI ACTGG 1 cut(s) 267
BseXI GCAGC 2 cut(s) 240, 308
BseYI CCCAGC 1 cut(s) 548
BshFI GGCC 6 cut(s) 45, 180, 456, 627, 639, 660
BshNI GGYRCC 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 445
BsiSI CCGG 1 cut(s) 245
BslFI GGGAC 1 cut(s) 177
BslI CCNNNNNNNGG 5 cut(s) 41, 250, 294, 506, 647
BsmFI GGGAC 1 cut(s) 177
BsnI GGCC 6 cut(s) 45, 180, 456, 627, 639, 660
Bsp1286I GDGCHC 1 cut(s) 445
Bsp143I GATC 1 cut(s) 329
BspANI GGCC 6 cut(s) 45, 180, 456, 627, 639, 660
BspCNI CTCAG 1 cut(s) 705
BspLI GGNNCC 2 cut(s) 23, 46
BspT107I GGYRCC 1 cut(s) 21
BspTI CTTAAG 1 cut(s) 609
BsrI ACTGG 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 1 cut(s) 329
BssSI CACGAG 1 cut(s) 601
Bst2BI CACGAG 1 cut(s) 601
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 2 cut(s) 56, 74
BstAFI CTTAAG 1 cut(s) 609
BstAPI GCANNNNNTGC 1 cut(s) 597
BstC8I GCNNGC 5 cut(s) 178, 233, 454, 574, 625
BstDEI CTNAG 1 cut(s) 692
BstF5I GGATG 1 cut(s) 602
BstHHI GCGC 1 cut(s) 653
BstKTI GATC 1 cut(s) 332
BstMBI GATC 1 cut(s) 329
BstMWI GCNNNNNNNGC 6 cut(s) 426, 435, 449, 597, 624, 657
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 1 cut(s) 438
BstSCI CCNGG 2 cut(s) 243, 499
BstSFI CTRYAG 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 240, 308
BstXI CCANNNNNNTGG 1 cut(s) 635
BsuRI GGCC 6 cut(s) 45, 180, 456, 627, 639, 660
BtsCI GGATG 1 cut(s) 602
BtsIMutI CAGTG 2 cut(s) 52, 88
Cac8I GCNNGC 5 cut(s) 178, 233, 454, 574, 625
CfoI GCGC 1 cut(s) 653
Cfr13I GGNCC 2 cut(s) 44, 638
CseI GACGC 1 cut(s) 327
Csp6I GTAC 2 cut(s) 270, 346
CviAII CATG 6 cut(s) 18, 375, 393, 435, 585, 666
CviQI GTAC 2 cut(s) 270, 346
DdeI CTNAG 1 cut(s) 692
DpnI GATC 1 cut(s) 331
DpnII GATC 1 cut(s) 329
DraI TTTAAA 1 cut(s) 224
DriI GACNNNNNGTC 2 cut(s) 340, 509
EaeI YGGCCR 1 cut(s) 454
Eam1105I GACNNNNNGTC 2 cut(s) 340, 509
Ecl136II GAGCTC 1 cut(s) 443
Eco147I AGGCCT 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 445
Eco53kI GAGCTC 1 cut(s) 443
EcoICRI GAGCTC 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 499
EcoT38I GRGCYC 1 cut(s) 445
FaeI CATG 6 cut(s) 21, 378, 396, 438, 588, 669
FaiI YATR 8 cut(s) 19, 89, 376, 394, 436, 586, 643, 667
FaqI GGGAC 1 cut(s) 177
FatI CATG 6 cut(s) 17, 374, 392, 434, 584, 665
FbaI TGATCA 1 cut(s) 329
FblI GTMKAC 1 cut(s) 565
Fnu4HI GCNGC 2 cut(s) 229, 322
FokI GGATG 1 cut(s) 609
FriOI GRGCYC 1 cut(s) 445
Fsp4HI GCNGC 2 cut(s) 229, 322
FspBI CTAG 5 cut(s) 7, 291, 430, 619, 718
GlaI GCGC 1 cut(s) 652
GluI GCNGC 2 cut(s) 229, 322
GsaI CCCAGC 1 cut(s) 552
HaeIII GGCC 6 cut(s) 45, 180, 456, 627, 639, 660
HapII CCGG 1 cut(s) 245
HgaI GACGC 1 cut(s) 327
HhaI GCGC 1 cut(s) 653
Hin1II CATG 6 cut(s) 21, 378, 396, 438, 588, 669
Hin6I GCGC 1 cut(s) 651
HinP1I GCGC 1 cut(s) 651
HincII GTYRAC 2 cut(s) 317, 514
HindII GTYRAC 2 cut(s) 317, 514
HinfI GANTC 2 cut(s) 14, 489
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 177
Hpy166II GTNNAC 3 cut(s) 317, 514, 566
Hpy188I TCNGA 7 cut(s) 185, 334, 369, 494, 545, 679, 695
Hpy8I GTNNAC 3 cut(s) 317, 514, 566
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 2 cut(s) 56, 74
HpyCH4V TGCA 1 cut(s) 235
HpyF10VI GCNNNNNNNGC 6 cut(s) 426, 435, 449, 597, 624, 657
HpyF3I CTNAG 1 cut(s) 692
Hsp92II CATG 6 cut(s) 21, 378, 396, 438, 588, 669
HspAI GCGC 1 cut(s) 651
Ksp22I TGATCA 1 cut(s) 329
Kzo9I GATC 1 cut(s) 329
LmnI GCTCC 1 cut(s) 545
LpnPI CCDG 9 cut(s) 162, 258, 280, 438, 486, 513, 534, 609, 639
Lsp1109I GCAGC 2 cut(s) 240, 308
LweI GCATC 2 cut(s) 587, 731
MaeI CTAG 5 cut(s) 7, 291, 430, 619, 718
MaeIII GTNAC 3 cut(s) 83, 410, 580
MalI GATC 1 cut(s) 331
MboI GATC 1 cut(s) 329
MboII GAAGA 2 cut(s) 381, 520
MfeI CAATTG 1 cut(s) 415
MhlI GDGCHC 1 cut(s) 445
MlsI TGGCCA 1 cut(s) 456
MluCI AATT 2 cut(s) 383, 415
MluNI TGGCCA 1 cut(s) 456
MlyI GAGTC 1 cut(s) 498
MmeI TCCRAC 1 cut(s) 472
MnlI CCTC 9 cut(s) 103, 130, 156, 179, 191, 533, 650, 707, 712
Mox20I TGGCCA 1 cut(s) 456
MscI TGGCCA 1 cut(s) 456
MseI TTAA 5 cut(s) 172, 223, 610, 723, 746
Msp20I TGGCCA 1 cut(s) 456
MspA1I CMGCKG 1 cut(s) 452
MspCI CTTAAG 1 cut(s) 609
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 2 cut(s) 245, 501
MunI CAATTG 1 cut(s) 415
MvaI CCWGG 1 cut(s) 501
MwoI GCNNNNNNNGC 6 cut(s) 426, 435, 449, 597, 624, 657
NciI CCSGG 1 cut(s) 245
NdeII GATC 1 cut(s) 329
NlaIII CATG 6 cut(s) 21, 378, 396, 438, 588, 669
NlaIV GGNNCC 2 cut(s) 23, 46
NmeAIII GCCGAG 1 cut(s) 464
NmuCI GTSAC 1 cut(s) 83
NspI RCATGY 1 cut(s) 438
PceI AGGCCT 1 cut(s) 180
PfeI GAWTC 1 cut(s) 14
PflMI CCANNNNNTGG 2 cut(s) 294, 647
PkrI GCNGC 2 cut(s) 230, 323
PleI GAGTC 1 cut(s) 497
PpsI GAGTC 1 cut(s) 497
Psp124BI GAGCTC 1 cut(s) 445
Psp6I CCWGG 1 cut(s) 499
PspFI CCCAGC 1 cut(s) 548
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 2 cut(s) 23, 46
PspPI GGNCC 2 cut(s) 44, 638
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 2 cut(s) 271, 347
RsaNI GTAC 2 cut(s) 270, 346
SacI GAGCTC 1 cut(s) 445
SaqAI TTAA 5 cut(s) 172, 223, 610, 723, 746
SatI GCNGC 2 cut(s) 229, 322
Sau3AI GATC 1 cut(s) 329
Sau96I GGNCC 2 cut(s) 44, 638
SchI GAGTC 1 cut(s) 498
ScrFI CCNGG 2 cut(s) 245, 501
SduI GDGCHC 1 cut(s) 445
SfaNI GCATC 2 cut(s) 587, 731
SfcI CTRYAG 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 609
SmoI CTYRAG 1 cut(s) 609
SpeI ACTAGT 2 cut(s) 6, 290
Sse9I AATT 2 cut(s) 383, 415
SseBI AGGCCT 1 cut(s) 180
SspI AATATT 1 cut(s) 29
SspMI CTAG 5 cut(s) 7, 291, 430, 619, 718
SstI GAGCTC 1 cut(s) 445
StuI AGGCCT 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 243, 499
TaaI ACNGT 2 cut(s) 56, 74
TaqI TCGA 2 cut(s) 282, 401
TasI AATT 2 cut(s) 383, 415
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 5 cut(s) 172, 223, 610, 723, 746
Tru9I TTAA 5 cut(s) 172, 223, 610, 723, 746
TscAI CASTG 2 cut(s) 59, 88
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 2 cut(s) 228, 321
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 4 cut(s) 6, 381, 520, 601
TspGWI ACGGA 1 cut(s) 694
TspRI CASTG 2 cut(s) 59, 88
Van91I CCANNNNNTGG 2 cut(s) 294, 647
Vha464I CTTAAG 1 cut(s) 609
XapI RAATTY 1 cut(s) 383
XceI RCATGY 1 cut(s) 438
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 565
XspI CTAG 5 cut(s) 7, 291, 430, 619, 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.