Rmu_co7988458.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7988458.1
OG0000591
Physical Location & Seq
Forward (+)
1 .. 519
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7988458.1_g000001.1.cds

Sequence Viewer

Length: 519 bp
aagtgctactctttggcgtcagctgtggaaagctcaggttccaagcagtgtgaagatatgtgcttggaaagcagcctctaacattcttcctactcggggtcggcttagtgaacgtggtgttgatatagacacccaatgcccactttgtgacgaagaagttgaaactcctctccatgcaactcgtgactgtccccatgctacaagtttgattcagggtgccattattccccttgtttcggccccttccactgtagcagattggctcacagttgtttcagcgacatctcctcatcattttgcctctttgttgatgattttgtgggctacttggaggaatagaaatgctaaagtttggggaggtgattttaagcaagcctcagagattgtcccaatgtcattgggttggttggcagaatttaaagcagctcgcattactacccggttggggttggcagctcgtccagtacccaaatggtcgaaaccaccagttggctttgtgaagttgaatgttgacgctgc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

173

Amino Acids

18.94

Weight (kDa)

9.46

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 216
AccB7I CCANNNNNTGG 1 cut(s) 489
AcsI RAATTY 1 cut(s) 414
AcyI GRCGYC 1 cut(s) 17
AdeI CACNNNGTG 1 cut(s) 147
AfaI GTAC 1 cut(s) 466
AfiI CCNNNNNNNGG 4 cut(s) 96, 236, 445, 489
AgsI TTSAA 2 cut(s) 162, 506
AluBI AGCT 4 cut(s) 23, 33, 426, 456
AluI AGCT 4 cut(s) 23, 33, 426, 456
Ama87I CYCGRG 1 cut(s) 94
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 4 cut(s) 72, 423, 453, 516
ApoI RAATTY 1 cut(s) 414
AspS9I GGNCC 1 cut(s) 239
AsuC2I CCSGG 1 cut(s) 440
AsuHPI GGTGA 1 cut(s) 372
AvaI CYCGRG 1 cut(s) 94
BanI GGYRCC 1 cut(s) 216
BauI CACGAG 1 cut(s) 181
BbvI GCAGC 4 cut(s) 84, 435, 465, 503
BcnI CCSGG 1 cut(s) 440
BfmI CTRYAG 1 cut(s) 250
BisI GCNGC 4 cut(s) 73, 424, 454, 517
BlsI GCNGC 4 cut(s) 74, 425, 455, 518
Bme1390I CCNGG 1 cut(s) 440
BmeT110I CYCGRG 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 3 cut(s) 40, 218, 241
BmrFI CCNGG 1 cut(s) 440
Bpu10I CCTNAGC 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 440
BsaHI GRCGYC 1 cut(s) 17
Bsc4I CCNNNNNNNGG 4 cut(s) 96, 236, 445, 489
Bse1I ACTGG 2 cut(s) 462, 486
BseLI CCNNNNNNNGG 4 cut(s) 96, 236, 445, 489
BseMII CTCAG 2 cut(s) 48, 391
BseNI ACTGG 2 cut(s) 462, 486
BseRI GAGGAG 2 cut(s) 157, 277
BseXI GCAGC 4 cut(s) 84, 435, 465, 503
BshFI GGCC 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 94
BsiSI CCGG 1 cut(s) 440
BslFI GGGAC 2 cut(s) 175, 372
BslI CCNNNNNNNGG 4 cut(s) 96, 236, 445, 489
BsmFI GGGAC 2 cut(s) 175, 372
BsnI GGCC 1 cut(s) 240
BsoBI CYCGRG 1 cut(s) 94
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 2 cut(s) 47, 390
BspLI GGNNCC 3 cut(s) 40, 218, 241
BspT107I GGYRCC 1 cut(s) 216
BsrI ACTGG 2 cut(s) 462, 486
BssNI GRCGYC 1 cut(s) 17
BssSI CACGAG 1 cut(s) 181
Bst2BI CACGAG 1 cut(s) 181
Bst4CI ACNGT 3 cut(s) 189, 251, 269
BstACI GRCGYC 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 373, 428
BstDEI CTNAG 3 cut(s) 34, 105, 377
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 438
BstSFI CTRYAG 1 cut(s) 250
BstV1I GCAGC 4 cut(s) 84, 435, 465, 503
BsuRI GGCC 1 cut(s) 240
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 2 cut(s) 53, 247
Cac8I GCNNGC 2 cut(s) 373, 428
Cfr13I GGNCC 1 cut(s) 239
CseI GACGC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 465
CviAII CATG 2 cut(s) 174, 195
CviQI GTAC 1 cut(s) 465
DdeI CTNAG 3 cut(s) 34, 105, 377
DraI TTTAAA 1 cut(s) 419
DraIII CACNNNGTG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 94
FaeI CATG 2 cut(s) 177, 198
FaiI YATR 4 cut(s) 59, 126, 175, 196
FaqI GGGAC 2 cut(s) 175, 372
FatI CATG 2 cut(s) 173, 194
Fnu4HI GCNGC 4 cut(s) 73, 424, 454, 517
Fsp4HI GCNGC 4 cut(s) 73, 424, 454, 517
GluI GCNGC 4 cut(s) 73, 424, 454, 517
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 440
HgaI GACGC 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 2 cut(s) 177, 198
HincII GTYRAC 1 cut(s) 512
HindII GTYRAC 1 cut(s) 512
HinfI GANTC 1 cut(s) 209
HpaII CCGG 1 cut(s) 440
HphI GGTGA 1 cut(s) 372
Hpy166II GTNNAC 2 cut(s) 111, 512
Hpy188I TCNGA 1 cut(s) 380
Hpy188III TCNNGA 1 cut(s) 183
Hpy8I GTNNAC 2 cut(s) 111, 512
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 3 cut(s) 189, 251, 269
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
HpyF3I CTNAG 3 cut(s) 34, 105, 377
HpySE526I ACGT 1 cut(s) 113
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 2 cut(s) 177, 198
LpnPI CCDG 5 cut(s) 21, 198, 453, 475, 499
Lsp1109I GCAGC 4 cut(s) 84, 435, 465, 503
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 2 cut(s) 147, 183
MboII GAAGA 3 cut(s) 65, 78, 165
MluCI AATT 1 cut(s) 414
MnlI CCTC 7 cut(s) 86, 178, 298, 311, 325, 351, 386
MseI TTAA 2 cut(s) 367, 418
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 1 cut(s) 440
MspR9I CCNGG 1 cut(s) 440
MwoI GCNNNNNNNGC 1 cut(s) 69
NciI CCSGG 1 cut(s) 440
NlaIII CATG 2 cut(s) 177, 198
NlaIV GGNNCC 3 cut(s) 40, 218, 241
NmuCI GTSAC 2 cut(s) 147, 183
PfeI GAWTC 1 cut(s) 209
PflMI CCANNNNNTGG 1 cut(s) 489
PkrI GCNGC 4 cut(s) 74, 425, 455, 518
PspN4I GGNNCC 3 cut(s) 40, 218, 241
PspPI GGNCC 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 23
RsaI GTAC 1 cut(s) 466
RsaNI GTAC 1 cut(s) 465
SaqAI TTAA 2 cut(s) 367, 418
SatI GCNGC 4 cut(s) 73, 424, 454, 517
Sau96I GGNCC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 440
SetI ASST 7 cut(s) 25, 35, 40, 116, 362, 428, 458
SfcI CTRYAG 1 cut(s) 250
Sse9I AATT 1 cut(s) 414
StyD4I CCNGG 1 cut(s) 438
TaaI ACNGT 3 cut(s) 189, 251, 269
TaiI ACGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 477
TasI AATT 1 cut(s) 414
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 2 cut(s) 367, 418
Tru9I TTAA 2 cut(s) 367, 418
TscAI CASTG 2 cut(s) 53, 254
TseFI GTSAC 2 cut(s) 147, 183
TseI GCWGC 4 cut(s) 72, 423, 453, 516
Tsp45I GTSAC 2 cut(s) 147, 183
TspRI CASTG 2 cut(s) 53, 254
Van91I CCANNNNNTGG 1 cut(s) 489
XapI RAATTY 1 cut(s) 414
XcmI CCANNNNNNNNNTGG 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.