Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005462

Physical Location & Seq

Genomic Coordinates Reverse (-)

737594 .. 741340

Gene Structure 3747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g00880.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTTGTGGGTCGACAAGTACCGACCCAAAACCCTAGACCAGGCAATTGTCCACCAAGACGTCGCCCAAAACCTCAAGAAACTCGTCGCGGAGCAGGACTGCCCCCATTTGCTATTTTATGGCCCTTCTGGTTCCGGCAAGAAAACCCTAATCATCGCCCTTCTTCGTCAGATTTTCGGACCCAGTGCCGATAAGGTGAAGGTGGAAAACAGGGCATGGAAAGTCGATGCTGGGAGTAGAACGATTGATATAGAGCTGACTACATTATCGAGCACCAATCATATTGAACTGAACCCCAGTGATGCAGGGTTTCAAGACAGATATATTGTTCAAGAGATAATCAAAGAAATGGCTAAAAATAGACCCATTGACACAAAAGGGAAAAAAGGATATAAAGTCCTAGTGCTGAATGAAGTTGACAAACTTTCAAGGGAAGCGCAGCATTCACTTAGAAGAACTATGGAGAAATATAGTGCTTATTGCCGGCTAATACTATGCTGTAACAGTTCTTCAAGGGTTACTGAAGCAATCAGGTCTCGATGTCTTAATGTGCGAATAAATTCACCAACAGAAGATCAGATTGTGAAGGTATTGGATTCCATCGGAAAGAAAGAAGGGCTGCAACTTCCTTCAGGATTTGTTGCTCGTATAGCTGAAAAATCCAATAGGAGCTTAAGGAGAGCTATATTGTCATTGGAAACTTGTCGTGTTCAACAATATCCGTTTACAAGTAACCAGGCCATACCACCTATGGATTGGGAAGAATATGTGTCTGAAATTGCATCTGATATAATGAAGGAGCAAAGCCCTAAAAGGCTTTATCAAGTGCGGCAAAAGTTATATGAGCTGCTGCTTAATTGTATTCCTCCGGAGATCATCTTGAAGAGACTTCTTTTTGAGTTATTGAAGAAGTTGGATGCGGAGTTGAAGCACGAGGTTTGTCATTGGGCTGCATATTATGAACATAGGATGCGTCTTGGGCAAAAAGCCATATTTCACCTTGAAGCGTTCGTGGCCAAGTTCATGAGCATTTATAAGGCATTCCTCATCGAAGCGTTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031390 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1900262 GO:1900264 GO:1901360 GO:1901576 GO:2000112 GO:2000278 GO:2000573

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 map03030 map03420 map03430

Pfam Domains

Protein Families

DNA_pol3_delta2

Protein Analysis

355

Amino Acids

40.74

Weight (kDa)

9.26

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27740
fragaria_vesca	FvH4_1g23560 FvH4_2g04970 FvH4_2g04970 FvH4_2g04970
malus_domestica	MD04G1041000.v1.1 MD04G1041300.v1.1 MD12G1011300.v1.1
prunus_persica	Prupe.1G194700_v2.0.a1 Prupe.1G194700_v2.0.a1 Prupe.4G268900_v2.0.a1 Prupe.4G268900_v2.0.a1 Prupe.7G013300_v2.0.a1 Prupe.7G013300_v2.0.a1 Prupe.7G013300_v2.0.a1
pyrus_communis	pycom12g00880
rosa_chinensis	RchiOBHm_Chr3g0496081
rosa_laevigata	RLG00000022564
rosa_multiflora	Rmu_sc0002392.1_g000001
rosa_roxburghii	Rroxscaffold_6G00389580
rosa_rugosa	Rorug03G0279300 Rorug03G0279400 Rorug03G0279400 Rorug03G0279400 Rorug03G0279500
rosa_samantha	Rh3AG326500 Rh3BG362800 Rh3DG362200
rosa_wichuraiana	Rw3G028590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1035
AatII	GACGTC	1 cut(s)	63
AccI	GTMKAC	1 cut(s)	12
AccII	CGCG	1 cut(s)	89
AccIII	TCCGGA	1 cut(s)	868
AciI	CCGC	3 cut(s)	89, 829, 920
AcoI	YGGCCR	1 cut(s)	1014
AcsI	RAATTY	1 cut(s)	559
AcuI	CTGAAG	2 cut(s)	543, 615
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	40
AflII	CTTAAG	1 cut(s)	673
AjnI	CCWGG	2 cut(s)	39, 735
AluBI	AGCT	5 cut(s)	256, 653, 672, 683, 847
AluI	AGCT	5 cut(s)	256, 653, 672, 683, 847
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	2 cut(s)	540, 880
Aor13HI	TCCGGA	1 cut(s)	868
AoxI	GGCC	3 cut(s)	121, 738, 1014
ApeKI	GCWGC	5 cut(s)	439, 619, 847, 850, 950
ApoI	RAATTY	1 cut(s)	559
Asp700I	GAANNNNTTC	1 cut(s)	559
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	2 cut(s)	122, 179
AsuHPI	GGTGA	3 cut(s)	208, 555, 989
AvaII	GGWCC	1 cut(s)	179
BalI	TGGCCA	1 cut(s)	1016
BarI	GAAGNNNNNNTAC	2 cut(s)	493, 525
BauI	CACGAG	1 cut(s)	932
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	5 cut(s)	451, 606, 834, 837, 937
BccI	CCATC	1 cut(s)	608
BciT130I	CCWGG	2 cut(s)	41, 737
BcoDI	GTCTC	2 cut(s)	540, 880
BfaI	CTAG	2 cut(s)	35, 401
BfrI	CTTAAG	1 cut(s)	673
BisI	GCNGC	6 cut(s)	440, 620, 830, 848, 851, 951
BlsI	GCNGC	6 cut(s)	441, 621, 831, 849, 852, 952
Bme1390I	CCNGG	2 cut(s)	41, 737
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	2 cut(s)	122, 179
BmiI	GGNNCC	2 cut(s)	133, 181
BmrFI	CCNGG	2 cut(s)	41, 737
BmrI	ACTGGG	2 cut(s)	177, 291
BmsI	GCATC	5 cut(s)	217, 292, 791, 907, 960
BmuI	ACTGGG	2 cut(s)	177, 291
BpuEI	CTTGAG	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	540
BsaWI	WCCGGW	1 cut(s)	868
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse118I	RCCGGY	1 cut(s)	483
Bse1I	ACTGG	2 cut(s)	183, 297
BseAI	TCCGGA	1 cut(s)	868
BseBI	CCWGG	2 cut(s)	41, 737
BseGI	GGATG	2 cut(s)	922, 975
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseNI	ACTGG	2 cut(s)	183, 297
BseXI	GCAGC	5 cut(s)	451, 606, 834, 837, 937
BseYI	CCCAGC	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	3 cut(s)	123, 740, 1016
BsiHKAI	GWGCWC	1 cut(s)	275
BsiSI	CCGG	3 cut(s)	135, 484, 869
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	2 cut(s)	540, 880
BsmI	GAATGC	2 cut(s)	442, 1040
BsnI	GGCC	3 cut(s)	123, 740, 1016
Bso31I	GGTCTC	1 cut(s)	540
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp13I	TCCGGA	1 cut(s)	868
Bsp143I	GATC	2 cut(s)	574, 873
BspACI	CCGC	3 cut(s)	89, 829, 920
BspANI	GGCC	3 cut(s)	123, 740, 1016
BspEI	TCCGGA	1 cut(s)	868
BspFNI	CGCG	1 cut(s)	89
BspHI	TCATGA	1 cut(s)	1023
BspLI	GGNNCC	2 cut(s)	133, 181
BspTI	CTTAAG	1 cut(s)	673
BspTNI	GGTCTC	1 cut(s)	540
BsrFI	RCCGGY	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	183, 297
BssAI	RCCGGY	1 cut(s)	483
BssMI	GATC	2 cut(s)	574, 873
BssNI	GRCGYC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	932
Bst2BI	CACGAG	1 cut(s)	932
Bst2UI	CCWGG	2 cut(s)	41, 737
Bst4CI	ACNGT	1 cut(s)	506
Bst6I	CTCTTC	1 cut(s)	878
BstACI	GRCGYC	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	673
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	1 cut(s)	449
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	922, 975
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	2 cut(s)	577, 876
BstMAI	GTCTC	2 cut(s)	540, 880
BstMBI	GATC	2 cut(s)	574, 873
BstMWI	GCNNNNNNNGC	3 cut(s)	650, 979, 1013
BstNI	CCWGG	2 cut(s)	41, 737
BstSCI	CCNGG	2 cut(s)	39, 735
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	5 cut(s)	451, 606, 834, 837, 937
BsuRI	GGCC	3 cut(s)	123, 740, 1016
BtgZI	GCGATG	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	922, 975
BtsIMutI	CAGTG	2 cut(s)	190, 304
Cac8I	GCNNGC	1 cut(s)	485
CciI	TCATGA	1 cut(s)	1023
CfoI	GCGC	1 cut(s)	439
Cfr10I	RCCGGY	1 cut(s)	483
Cfr13I	GGNCC	2 cut(s)	122, 179
CseI	GACGC	1 cut(s)	962
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	2 cut(s)	216, 1024
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	2 cut(s)	576, 875
DpnII	GATC	2 cut(s)	574, 873
EaeI	YGGCCR	1 cut(s)	1014
Eam1104I	CTCTTC	1 cut(s)	878
EarI	CTCTTC	1 cut(s)	878
Eco31I	GGTCTC	1 cut(s)	540
Eco47I	GGWCC	1 cut(s)	179
Eco57I	CTGAAG	2 cut(s)	543, 615
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoRII	CCWGG	2 cut(s)	39, 735
FaeI	CATG	2 cut(s)	219, 1027
FatI	CATG	2 cut(s)	215, 1023
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	6 cut(s)	440, 620, 830, 848, 851, 951
FokI	GGATG	2 cut(s)	929, 982
Fsp4HI	GCNGC	6 cut(s)	440, 620, 830, 848, 851, 951
FspBI	CTAG	2 cut(s)	35, 401
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	6 cut(s)	440, 620, 830, 848, 851, 951
GsaI	CCCAGC	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	123, 740, 1016
HapII	CCGG	3 cut(s)	135, 484, 869
HgaI	GACGC	1 cut(s)	962
HhaI	GCGC	1 cut(s)	439
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	219, 1027
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HincII	GTYRAC	2 cut(s)	13, 418
HindII	GTYRAC	2 cut(s)	13, 418
HinfI	GANTC	1 cut(s)	596
HpaII	CCGG	3 cut(s)	135, 484, 869
HphI	GGTGA	3 cut(s)	208, 555, 989
Hpy166II	GTNNAC	4 cut(s)	13, 52, 418, 726
Hpy188I	TCNGA	6 cut(s)	171, 179, 579, 605, 775, 787
Hpy188III	TCNNGA	8 cut(s)	76, 314, 332, 537, 633, 869, 880, 1024
Hpy8I	GTNNAC	4 cut(s)	13, 52, 418, 726
Hpy99I	CGWCG	2 cut(s)	65, 89
HpyAV	CCTTC	7 cut(s)	135, 170, 193, 580, 608, 639, 790
HpyCH4III	ACNGT	1 cut(s)	506
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	4 cut(s)	305, 622, 782, 953
HpyF10VI	GCNNNNNNNGC	3 cut(s)	650, 979, 1013
HpyF3I	CTNAG	1 cut(s)	449
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	219, 1027
HspAI	GCGC	1 cut(s)	437
Kpn2I	TCCGGA	1 cut(s)	868
KroI	GCCGGC	1 cut(s)	483
KroNI	GCCGGC	1 cut(s)	485
Kzo9I	GATC	2 cut(s)	574, 873
LmnI	GCTCC	3 cut(s)	91, 669, 799
Lsp1109I	GCAGC	5 cut(s)	451, 606, 834, 837, 937
LweI	GCATC	5 cut(s)	217, 292, 791, 907, 960
MaeI	CTAG	2 cut(s)	35, 401
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	3 cut(s)	500, 517, 731
MalI	GATC	2 cut(s)	576, 875
MboI	GATC	2 cut(s)	574, 873
MboII	GAAGA	7 cut(s)	155, 465, 501, 584, 773, 895, 919
MfeI	CAATTG	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	275
MlsI	TGGCCA	1 cut(s)	1016
MluCI	AATT	4 cut(s)	45, 559, 777, 856
MluNI	TGGCCA	1 cut(s)	1016
MmeI	TCCRAC	1 cut(s)	894
MnlI	CCTC	4 cut(s)	83, 876, 928, 1055
Mox20I	TGGCCA	1 cut(s)	1016
MroI	TCCGGA	1 cut(s)	868
MroNI	GCCGGC	1 cut(s)	483
MroXI	GAANNNNTTC	1 cut(s)	559
MscI	TGGCCA	1 cut(s)	1016
MseI	TTAA	3 cut(s)	546, 674, 855
Msp20I	TGGCCA	1 cut(s)	1016
MspCI	CTTAAG	1 cut(s)	673
MspI	CCGG	3 cut(s)	135, 484, 869
MspR9I	CCNGG	2 cut(s)	41, 737
MunI	CAATTG	1 cut(s)	45
Mva1269I	GAATGC	2 cut(s)	442, 1040
MvaI	CCWGG	2 cut(s)	41, 737
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	3 cut(s)	650, 979, 1013
NaeI	GCCGGC	1 cut(s)	485
NdeII	GATC	2 cut(s)	574, 873
NgoMIV	GCCGGC	1 cut(s)	483
NlaIII	CATG	2 cut(s)	219, 1027
NlaIV	GGNNCC	2 cut(s)	133, 181
PagI	TCATGA	1 cut(s)	1023
PctI	GAATGC	2 cut(s)	442, 1040
PdiI	GCCGGC	1 cut(s)	485
PdmI	GAANNNNTTC	1 cut(s)	559
PfeI	GAWTC	1 cut(s)	596
PkrI	GCNGC	6 cut(s)	441, 621, 831, 849, 852, 952
PsiI	TTATAA	1 cut(s)	1035
Psp6I	CCWGG	2 cut(s)	39, 735
PspFI	CCCAGC	1 cut(s)	230
PspGI	CCWGG	2 cut(s)	39, 735
PspN4I	GGNNCC	2 cut(s)	133, 181
PspPI	GGNCC	2 cut(s)	122, 179
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SalI	GTCGAC	1 cut(s)	11
SaqAI	TTAA	3 cut(s)	546, 674, 855
SatI	GCNGC	6 cut(s)	440, 620, 830, 848, 851, 951
Sau3AI	GATC	2 cut(s)	574, 873
Sau96I	GGNCC	2 cut(s)	122, 179
ScrFI	CCNGG	2 cut(s)	41, 737
SduI	GDGCHC	1 cut(s)	275
SfaNI	GCATC	5 cut(s)	217, 292, 791, 907, 960
SinI	GGWCC	1 cut(s)	179
SmlI	CTYRAG	2 cut(s)	74, 673
SmoI	CTYRAG	2 cut(s)	74, 673
Sse9I	AATT	4 cut(s)	45, 559, 777, 856
SsiI	CCGC	3 cut(s)	89, 829, 920
SspMI	CTAG	2 cut(s)	35, 401
StyD4I	CCNGG	2 cut(s)	39, 735
TaaI	ACNGT	1 cut(s)	506
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	5 cut(s)	12, 225, 269, 538, 1050
TasI	AATT	4 cut(s)	45, 559, 777, 856
TauI	GCSGC	1 cut(s)	832
TfiI	GAWTC	1 cut(s)	596
Tru1I	TTAA	3 cut(s)	546, 674, 855
Tru9I	TTAA	3 cut(s)	546, 674, 855
TscAI	CASTG	2 cut(s)	190, 304
TseI	GCWGC	5 cut(s)	439, 619, 847, 850, 950
TspDTI	ATGAA	4 cut(s)	426, 809, 975, 1012
TspGWI	ACGGA	1 cut(s)	711
TspRI	CASTG	2 cut(s)	190, 304
Vha464I	CTTAAG	1 cut(s)	673
VpaK11BI	GGWCC	1 cut(s)	179
XagI	CCTNNNNNAGG	1 cut(s)	38
XapI	RAATTY	1 cut(s)	559
XcmI	CCANNNNNNNNNTGG	2 cut(s)	748, 753
XmiI	GTMKAC	1 cut(s)	12
XmnI	GAANNNNTTC	1 cut(s)	559
XspI	CTAG	2 cut(s)	35, 401
ZraI	GACGTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.