Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006208

Physical Location & Seq

Genomic Coordinates Reverse (-)

10043907 .. 10046099

Gene Structure 2193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G28050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAAGAAGCTAAAGTGGAAGCAAAAGATGGTACCATCTCCGTAGCTTCTGCATTTTCCGGTCACCAACAAGCTGTTCACGATAGCGACCATAAATTCCTAACGCAAGCTGTTGAAGAAGCTTACAAGGGAGTGGACTGTGGTGATGGTGGCCCATTTGGTGCGGTGATTGTGCATAATAACGAGGTTGTCGCTAGCTGCCACAATATGGTTTTGAAATATACTGACCCAACTGCACATGCTGAAGTCACTGCCATTAGAGAGGCATGTAAGAAACTTAACAAAATCGAGTTATCAGAATGCGAGATTTACGCATCTTGTGAGCCATGTCCGATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAGAGGTTGGTTTATGGAGCCAAAGCCGAAGCAGCTATAGCCATCGGGTTTGATGACTTCATAGCTGATGCTTTGAGAGGCACGGGGGTTTACCAGAAATCTAGTCTGGAGATCAAGAAAGCAGACGGGAATGGCGCTGCGATTGCGGAGCAAGTTTTCCAGAACACAAAGGAGAAGTTCCGTTTATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

185

Amino Acids

20.0

Weight (kDa)

5.64

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	29 - 128	8.1e-27	Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam	PF14437	30 - 177	8.7e-23	MafB19-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05300 AT5G28050 AT5G28050 AT5G28050
fragaria_vesca	FvH4_6g03650
malus_domestica	MD04G1219800.v1.1 MD12G1236600.v1.1
prunus_persica	Prupe.1G103100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1
pyrus_communis	pycom04g19480 pycom12g21750
rosa_chinensis	RchiOBHm_Chr3g0452181
rosa_laevigata	RLG00000025620
rosa_multiflora	Rmu_sc0020870.1_g000006 Rmu_sc0042699.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435980 Rroxscaffold_6G00429320
rosa_rugosa	Rorug02G0638900 Rorug02G0639000
rosa_samantha	Rh3AG040800 Rh3BG042600 Rh3CG040900 Rh3DG041800
rosa_wichuraiana	Rw3G003120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	32
AccB1I	GGYRCC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	208
AciI	CCGC	2 cut(s)	164, 512
AcsI	RAATTY	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgsI	TTSAA	2 cut(s)	116, 217
AjuI	GAANNNNNNNTTGG	2 cut(s)	60, 92
AluBI	AGCT	8 cut(s)	11, 47, 74, 110, 122, 198, 401, 431
AluI	AGCT	8 cut(s)	11, 47, 74, 110, 122, 198, 401, 431
Alw26I	GTCTC	1 cut(s)	355
Ama87I	CYCGRG	1 cut(s)	358
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	3 cut(s)	198, 398, 503
ApoI	RAATTY	1 cut(s)	95
Asp718I	GGTACC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	503
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	3 cut(s)	56, 155, 178
AsuNHI	GCTAGC	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	32
BbvI	GCAGC	3 cut(s)	185, 410, 490
BccI	CCATC	6 cut(s)	23, 44, 140, 356, 360, 416
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	2 cut(s)	195, 468
BfmI	CTRYAG	1 cut(s)	402
BfoI	RGCGCY	1 cut(s)	504
BisI	GCNGC	3 cut(s)	199, 399, 504
BlsI	GCNGC	3 cut(s)	200, 400, 505
BmeT110I	CYCGRG	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	3 cut(s)	34, 346, 385
BmsI	GCATC	2 cut(s)	323, 424
BmtI	GCTAGC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	494
BpuEI	CTTGAG	1 cut(s)	350
BsaWI	WCCGGW	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseXI	GCAGC	3 cut(s)	185, 410, 490
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	1 cut(s)	355
BsmI	GAATGC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	358
Bsp143I	GATC	1 cut(s)	477
BspACI	CCGC	2 cut(s)	164, 512
BspANI	GGCC	1 cut(s)	153
BspLI	GGNNCC	3 cut(s)	34, 346, 385
BspOI	GCTAGC	1 cut(s)	198
BspT107I	GGYRCC	1 cut(s)	32
BssMI	GATC	1 cut(s)	477
Bst4CI	ACNGT	1 cut(s)	140
BstC8I	GCNNGC	2 cut(s)	108, 196
BstEII	GGTNACC	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	348
BstH2I	RGCGCY	1 cut(s)	504
BstHHI	GCGC	1 cut(s)	503
BstKTI	GATC	1 cut(s)	480
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	1 cut(s)	477
BstMWI	GCNNNNNNNGC	3 cut(s)	398, 404, 509
BstNSI	RCATGY	2 cut(s)	242, 270
BstPI	GGTNACC	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	3 cut(s)	185, 410, 490
BsuRI	GGCC	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	348
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	108, 196
CfoI	GCGC	1 cut(s)	503
Cfr13I	GGNCC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	3 cut(s)	239, 267, 327
CviQI	GTAC	1 cut(s)	33
DpnI	GATC	1 cut(s)	479
DpnII	GATC	1 cut(s)	477
Eco57I	CTGAAG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	358
Eco91I	GGTNACC	1 cut(s)	62
EcoO65I	GGTNACC	1 cut(s)	62
FaeI	CATG	3 cut(s)	242, 270, 330
FatI	CATG	3 cut(s)	238, 266, 326
Fnu4HI	GCNGC	3 cut(s)	199, 399, 504
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	3 cut(s)	199, 399, 504
FspBI	CTAG	2 cut(s)	195, 468
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	3 cut(s)	199, 399, 504
GsuI	CTGGAG	1 cut(s)	494
HaeII	RGCGCY	1 cut(s)	504
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	1 cut(s)	60
HhaI	GCGC	1 cut(s)	503
Hin1II	CATG	3 cut(s)	242, 270, 330
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	1 cut(s)	363
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	3 cut(s)	56, 155, 178
Hpy166II	GTNNAC	3 cut(s)	79, 136, 457
Hpy188I	TCNGA	3 cut(s)	298, 333, 344
Hpy188III	TCNNGA	7 cut(s)	80, 358, 360, 367, 473, 481, 526
Hpy8I	GTNNAC	3 cut(s)	79, 136, 457
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	3 cut(s)	53, 175, 236
HpyF10VI	GCNNNNNNNGC	3 cut(s)	398, 404, 509
Hsp92II	CATG	3 cut(s)	242, 270, 330
HspAI	GCGC	1 cut(s)	501
KpnI	GGTACC	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	477
LmnI	GCTCC	3 cut(s)	344, 383, 514
LpnPI	CCDG	4 cut(s)	73, 458, 473, 539
Lsp1109I	GCAGC	3 cut(s)	185, 410, 490
LweI	GCATC	2 cut(s)	323, 424
MaeI	CTAG	2 cut(s)	195, 468
MaeIII	GTNAC	2 cut(s)	62, 247
MalI	GATC	1 cut(s)	479
MboI	GATC	1 cut(s)	477
MboII	GAAGA	2 cut(s)	17, 128
MluCI	AATT	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	357
MnlI	CCTC	4 cut(s)	178, 256, 363, 437
MseI	TTAA	1 cut(s)	279
MspI	CCGG	1 cut(s)	60
Mva1269I	GAATGC	1 cut(s)	305
MwoI	GCNNNNNNNGC	3 cut(s)	398, 404, 509
NdeII	GATC	1 cut(s)	477
NheI	GCTAGC	1 cut(s)	194
NlaIII	CATG	3 cut(s)	242, 270, 330
NlaIV	GGNNCC	3 cut(s)	34, 346, 385
NmuCI	GTSAC	2 cut(s)	62, 247
NspI	RCATGY	2 cut(s)	242, 270
PaeR7I	CTCGAG	1 cut(s)	358
PctI	GAATGC	1 cut(s)	305
PflMI	CCANNNNNTGG	1 cut(s)	208
PkrI	GCNGC	3 cut(s)	200, 400, 505
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
PspEI	GGTNACC	1 cut(s)	62
PspN4I	GGNNCC	3 cut(s)	34, 346, 385
PspPI	GGNCC	1 cut(s)	152
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	3 cut(s)	199, 399, 504
Sau3AI	GATC	1 cut(s)	477
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	1 cut(s)	357
SfaNI	GCATC	2 cut(s)	323, 424
SfcI	CTRYAG	1 cut(s)	402
Sfr274I	CTCGAG	1 cut(s)	358
SlaI	CTCGAG	1 cut(s)	358
SmlI	CTYRAG	2 cut(s)	358, 365
SmoI	CTYRAG	2 cut(s)	358, 365
Sse9I	AATT	1 cut(s)	95
SsiI	CCGC	2 cut(s)	164, 512
SspMI	CTAG	2 cut(s)	195, 468
TaaI	ACNGT	1 cut(s)	140
TaqI	TCGA	2 cut(s)	288, 359
TasI	AATT	1 cut(s)	95
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	2 cut(s)	62, 247
TseI	GCWGC	3 cut(s)	198, 398, 503
Tsp45I	GTSAC	2 cut(s)	62, 247
TspDTI	ATGAA	1 cut(s)	415
TspGWI	ACGGA	2 cut(s)	31, 536
TspRI	CASTG	1 cut(s)	256
Van91I	CCANNNNNTGG	1 cut(s)	208
XapI	RAATTY	1 cut(s)	95
XceI	RCATGY	2 cut(s)	242, 270
XhoI	CTCGAG	1 cut(s)	358
XspI	CTAG	2 cut(s)	195, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.