Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006208

Physical Location & Seq

Genomic Coordinates Reverse (-)

30128140 .. 30133024

Gene Structure 4885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1219800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCGGAAGCTAACGTGGTGGAAACGCAAGATGGAACCCTTTCTGTGGCCGCTGCATTTGCTGCACATCAAGAAGTTGTACAGGATAGAGACCACAAATTCTTAACAGAAGCGGTTGGGGAAGCTTATAAGGGAGTTGATTGTGGAGATGGAGGCCCATTTGGTGCAGTTATTGTTCGCAATGATGAGATAGTCGTAAGCTGTCACAACATGGTTCTAAAACACACTGATCCGACTGCCCATGCAGAGGTTACTGCCATAAGAGAGGCCTGTAAGAAGCTCAATCAGATCGAGCTCGCGGACTGCGAAATATATGCATCCTGTGAGCCATGCCCAATGTGCTTTGGTGCCATCCATCTTTCAAGACTTAAGAGGTTGGTTTACGGAGCTAAGGCCGAAGCCGCCATAGCAATTGGTTTCGACGATTTCATAGCGGACGCGTTGAGGGGCACTGCATTTTACCAGAAGGCTAACATGGAGATCAAGAAGGCCGACGGGAACGGCGCGGTGATTGCTGAACAAGTATTTGAGAAAACGAAGGCGAAGTTTCACATGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

187

Amino Acids

20.14

Weight (kDa)

5.34

Isoelectric Point (pI)

29.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	30 - 129	6.9e-27	Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam	PF14437	35 - 178	7.8e-20	MafB19-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05300 AT5G28050 AT5G28050 AT5G28050
fragaria_vesca	FvH4_6g03650
malus_domestica	MD04G1219800.v1.1 MD12G1236600.v1.1
prunus_persica	Prupe.1G103100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1
pyrus_communis	pycom04g19480 pycom12g21750
rosa_chinensis	RchiOBHm_Chr3g0452181
rosa_laevigata	RLG00000025620
rosa_multiflora	Rmu_sc0020870.1_g000006 Rmu_sc0042699.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435980 Rroxscaffold_6G00429320
rosa_rugosa	Rorug02G0638900 Rorug02G0639000
rosa_samantha	Rh3AG040800 Rh3BG042600 Rh3CG040900 Rh3DG041800
rosa_wichuraiana	Rw3G003120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	129
AccB1I	GGYRCC	1 cut(s)	347
AccII	CGCG	3 cut(s)	299, 440, 506
AciI	CCGC	7 cut(s)	5, 51, 113, 299, 402, 434, 506
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	98
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	2 cut(s)	46, 247
AflII	CTTAAG	1 cut(s)	368
AflIII	ACRYGT	2 cut(s)	438, 552
AgsI	TTSAA	1 cut(s)	363
AluBI	AGCT	6 cut(s)	11, 125, 201, 280, 295, 389
AluI	AGCT	6 cut(s)	11, 125, 201, 280, 295, 389
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	1 cut(s)	84
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	5 cut(s)	48, 154, 267, 393, 489
ApeKI	GCWGC	2 cut(s)	53, 62
ApoI	RAATTY	1 cut(s)	98
Asp700I	GAANNNNTTC	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	506
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	520
BaeGI	GKGCMC	1 cut(s)	452
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	2 cut(s)	40, 49
BccI	CCATC	4 cut(s)	26, 143, 359, 363
BceAI	ACGGC	1 cut(s)	517
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BcoDI	GTCTC	1 cut(s)	84
BfrI	CTTAAG	1 cut(s)	368
BisI	GCNGC	4 cut(s)	51, 54, 63, 402
BlsI	GCNGC	4 cut(s)	52, 55, 64, 403
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	2 cut(s)	37, 349
BmsI	GCATC	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 247
Bse3DI	GCAATG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	317, 351
BseLI	CCNNNNNNNGG	2 cut(s)	46, 247
BseMI	GCAATG	1 cut(s)	187
BseSI	GKGCMC	1 cut(s)	452
BseXI	GCAGC	2 cut(s)	40, 49
BsgI	GTGCAG	2 cut(s)	48, 186
Bsh1236I	CGCG	3 cut(s)	299, 440, 506
BshFI	GGCC	5 cut(s)	50, 156, 269, 395, 491
BshNI	GGYRCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	297
BslI	CCNNNNNNNGG	2 cut(s)	46, 247
BsmAI	GTCTC	1 cut(s)	84
BsnI	GGCC	5 cut(s)	50, 156, 269, 395, 491
Bso31I	GGTCTC	1 cut(s)	84
Bsp1286I	GDGCHC	2 cut(s)	297, 452
Bsp1407I	TGTACA	1 cut(s)	79
Bsp143I	GATC	3 cut(s)	229, 288, 480
BspACI	CCGC	7 cut(s)	5, 51, 113, 299, 402, 434, 506
BspANI	GGCC	5 cut(s)	50, 156, 269, 395, 491
BspFNI	CGCG	3 cut(s)	299, 440, 506
BspLI	GGNNCC	2 cut(s)	37, 349
BspPI	GGATC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	347
BspTI	CTTAAG	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	187
BsrGI	TGTACA	1 cut(s)	79
BssMI	GATC	3 cut(s)	229, 288, 480
BstAFI	CTTAAG	1 cut(s)	368
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstAUI	TGTACA	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	390
BstF5I	GGATG	2 cut(s)	317, 351
BstFNI	CGCG	3 cut(s)	299, 440, 506
BstHHI	GCGC	1 cut(s)	506
BstKTI	GATC	3 cut(s)	232, 291, 483
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	3 cut(s)	229, 288, 480
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 62, 339, 401, 407, 512
BstNSI	RCATGY	1 cut(s)	556
BstSLI	GKGCMC	1 cut(s)	452
BstUI	CGCG	3 cut(s)	299, 440, 506
BstV1I	GCAGC	2 cut(s)	40, 49
BsuRI	GGCC	5 cut(s)	50, 156, 269, 395, 491
BtsCI	GGATG	2 cut(s)	317, 351
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	2 cut(s)	225, 450
Cac8I	GCNNGC	1 cut(s)	297
CfoI	GCGC	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	155
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	5 cut(s)	211, 242, 330, 475, 553
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	3 cut(s)	231, 290, 482
DpnII	GATC	3 cut(s)	229, 288, 480
EaeI	YGGCCR	1 cut(s)	48
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	295
Eco147I	AGGCCT	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	297
Eco31I	GGTCTC	1 cut(s)	84
Eco53kI	GAGCTC	1 cut(s)	295
EcoICRI	GAGCTC	1 cut(s)	295
EcoT22I	ATGCAT	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	297
FaeI	CATG	5 cut(s)	214, 245, 333, 478, 556
FatI	CATG	5 cut(s)	210, 241, 329, 474, 552
Fnu4HI	GCNGC	4 cut(s)	51, 54, 63, 402
FokI	GGATG	2 cut(s)	304, 338
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	4 cut(s)	51, 54, 63, 402
GlaI	GCGC	1 cut(s)	505
GluI	GCNGC	4 cut(s)	51, 54, 63, 402
HaeIII	GGCC	5 cut(s)	50, 156, 269, 395, 491
HgaI	GACGC	1 cut(s)	446
HhaI	GCGC	1 cut(s)	506
Hin1II	CATG	5 cut(s)	214, 245, 333, 478, 556
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HindIII	AAGCTT	1 cut(s)	123
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	2 cut(s)	234, 288
Hpy188III	TCNNGA	3 cut(s)	71, 363, 484
Hpy8I	GTNNAC	1 cut(s)	382
Hpy99I	CGWCG	2 cut(s)	425, 497
HpyAV	CCTTC	3 cut(s)	460, 481, 532
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	6 cut(s)	56, 65, 167, 245, 317, 455
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 62, 339, 401, 407, 512
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	5 cut(s)	214, 245, 333, 478, 556
HspAI	GCGC	1 cut(s)	504
Kzo9I	GATC	3 cut(s)	229, 288, 480
LmnI	GCTCC	1 cut(s)	386
LpnPI	CCDG	4 cut(s)	68, 283, 334, 476
Lsp1109I	GCAGC	2 cut(s)	40, 49
LweI	GCATC	1 cut(s)	326
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	203, 250
MalI	GATC	3 cut(s)	231, 290, 482
MboI	GATC	3 cut(s)	229, 288, 480
MfeI	CAATTG	1 cut(s)	411
MhlI	GDGCHC	2 cut(s)	297, 452
MluCI	AATT	2 cut(s)	98, 411
MluI	ACGCGT	1 cut(s)	438
MmeI	TCCRAC	1 cut(s)	257
MnlI	CCTC	5 cut(s)	146, 241, 259, 366, 438
Mph1103I	ATGCAT	1 cut(s)	319
MroXI	GAANNNNTTC	1 cut(s)	40
MseI	TTAA	2 cut(s)	104, 369
MspA1I	CMGCKG	1 cut(s)	53
MspCI	CTTAAG	1 cut(s)	368
MunI	CAATTG	1 cut(s)	411
MvnI	CGCG	3 cut(s)	299, 440, 506
MwoI	GCNNNNNNNGC	6 cut(s)	59, 62, 339, 401, 407, 512
NdeII	GATC	3 cut(s)	229, 288, 480
NlaIII	CATG	5 cut(s)	214, 245, 333, 478, 556
NlaIV	GGNNCC	2 cut(s)	37, 349
NmuCI	GTSAC	1 cut(s)	203
NsiI	ATGCAT	1 cut(s)	319
NspI	RCATGY	1 cut(s)	556
PceI	AGGCCT	1 cut(s)	269
PciI	ACATGT	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PdmI	GAANNNNTTC	1 cut(s)	40
PkrI	GCNGC	4 cut(s)	52, 55, 64, 403
PscI	ACATGT	1 cut(s)	552
PsiI	TTATAA	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	297
PspN4I	GGNNCC	2 cut(s)	37, 349
PspPI	GGNCC	1 cut(s)	155
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SacI	GAGCTC	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	104, 369
SatI	GCNGC	4 cut(s)	51, 54, 63, 402
Sau3AI	GATC	3 cut(s)	229, 288, 480
Sau96I	GGNCC	1 cut(s)	155
SduI	GDGCHC	2 cut(s)	297, 452
SetI	ASST	9 cut(s)	13, 18, 127, 203, 252, 282, 297, 377, 391
SfaNI	GCATC	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	2 cut(s)	98, 411
SseBI	AGGCCT	1 cut(s)	269
SsiI	CCGC	7 cut(s)	5, 51, 113, 299, 402, 434, 506
SstI	GAGCTC	1 cut(s)	297
StuI	AGGCCT	1 cut(s)	269
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	291, 420
TasI	AATT	2 cut(s)	98, 411
TatI	WGTACW	1 cut(s)	79
TauI	GCSGC	2 cut(s)	53, 404
Tru1I	TTAA	2 cut(s)	104, 369
Tru9I	TTAA	2 cut(s)	104, 369
TscAI	CASTG	2 cut(s)	232, 457
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	2 cut(s)	53, 62
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	418
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	2 cut(s)	232, 457
Vha464I	CTTAAG	1 cut(s)	368
XapI	RAATTY	1 cut(s)	98
XceI	RCATGY	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	40
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.