Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042699.1

Orthogroup ID

OG0006208

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1686

Gene Structure 1686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042699.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 530 bp

atggaaccatttctgtggcttctgcttttgctgcgcatcaagaagttgtacaggatagagatcacaagttcttaacactagcagttcaagaagcttataagggagttgactgcggagatggagggccatttggtgctgttattgttcgcaatgatgaagtagttgtcagctgtcacaacatggttctgacacacactgatccaactgcacatgcagaggttactgccgtaagagaggcctgtaagaagctgaatcagatagagctgtcagactgtgaaatatatgcatcttgtgagccatgtccaatgtgtttcggtgctattcatctttcaagacttaagaggttggtttatggagccaaagctgaagcagctattgcaattgggttcgatgatttcattgctgatgcattgagaggcactgcagtttatcagaaggctcacatggagattaagaaagctgatggcaacggtgcacttcttgctgaacaagtatttgagaaaacaaaggccaagttttccatgtattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

175

Amino Acids

18.92

Weight (kDa)

5.78

Isoelectric Point (pI)

27.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05300 AT5G28050 AT5G28050 AT5G28050
fragaria_vesca	FvH4_6g03650
malus_domestica	MD04G1219800.v1.1 MD12G1236600.v1.1
prunus_persica	Prupe.1G103100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1
pyrus_communis	pycom04g19480 pycom12g21750
rosa_chinensis	RchiOBHm_Chr3g0452181
rosa_laevigata	RLG00000025620
rosa_multiflora	Rmu_sc0020870.1_g000006 Rmu_sc0042699.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435980 Rroxscaffold_6G00429320
rosa_rugosa	Rorug02G0638900 Rorug02G0639000
rosa_samantha	Rh3AG040800 Rh3BG042600 Rh3CG040900 Rh3DG041800
rosa_wichuraiana	Rw3G003120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	98
Acc16I	TGCGCA	1 cut(s)	35
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	1 cut(s)	193
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	1 cut(s)	50
AflII	CTTAAG	1 cut(s)	337
AgsI	TTSAA	2 cut(s)	88, 332
AluBI	AGCT	7 cut(s)	94, 170, 249, 264, 364, 373, 460
AluI	AGCT	7 cut(s)	94, 170, 249, 264, 364, 373, 460
Alw21I	GWGCWC	1 cut(s)	477
Alw44I	GTGCAC	1 cut(s)	473
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	3 cut(s)	124, 236, 509
ApaLI	GTGCAC	1 cut(s)	473
ApeKI	GCWGC	2 cut(s)	31, 370
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	124
BaeGI	GKGCMC	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	477
BbvI	GCAGC	2 cut(s)	18, 382
BccI	CCATC	2 cut(s)	112, 457
BceAI	ACGGC	1 cut(s)	211
BfaI	CTAG	1 cut(s)	79
BfmI	CTRYAG	1 cut(s)	422
BfrI	CTTAAG	1 cut(s)	337
BisI	GCNGC	2 cut(s)	32, 371
BlsI	GCNGC	2 cut(s)	33, 372
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	2 cut(s)	6, 357
BmsI	GCATC	3 cut(s)	45, 295, 396
BsaBI	GATNNNNATC	1 cut(s)	59
Bse3DI	GCAATG	2 cut(s)	156, 398
Bse8I	GATNNNNATC	1 cut(s)	59
BseJI	GATNNNNATC	1 cut(s)	59
BseMI	GCAATG	2 cut(s)	156, 398
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	2 cut(s)	18, 382
BsgI	GTGCAG	1 cut(s)	191
BshFI	GGCC	3 cut(s)	126, 238, 511
BsiHKAI	GWGCWC	1 cut(s)	477
BsnI	GGCC	3 cut(s)	126, 238, 511
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	60, 198
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	3 cut(s)	126, 238, 511
BspLI	GGNNCC	2 cut(s)	6, 357
BspMAI	CTGCAG	1 cut(s)	426
BspPI	GGATC	1 cut(s)	193
BspTI	CTTAAG	1 cut(s)	337
BsrDI	GCAATG	2 cut(s)	156, 398
BsrGI	TGTACA	1 cut(s)	48
BssMI	GATC	2 cut(s)	60, 198
Bst4CI	ACNGT	2 cut(s)	274, 472
BstAFI	CTTAAG	1 cut(s)	337
BstAPI	GCANNNNNTGC	2 cut(s)	376, 481
BstAUI	TGTACA	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	2 cut(s)	63, 201
BstMBI	GATC	2 cut(s)	60, 198
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 370, 376, 481
BstNSI	RCATGY	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	422
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	2 cut(s)	18, 382
BstXI	CCANNNNNNTGG	1 cut(s)	15
BsuRI	GGCC	3 cut(s)	126, 238, 511
BtsI	GCAGTG	1 cut(s)	419
BtsIMutI	CAGTG	2 cut(s)	194, 419
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	5 cut(s)	180, 211, 299, 444, 522
CviQI	GTAC	1 cut(s)	49
DpnI	GATC	2 cut(s)	62, 200
DpnII	GATC	2 cut(s)	60, 198
Eco147I	AGGCCT	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	386
EcoT22I	ATGCAT	2 cut(s)	288, 411
FaeI	CATG	5 cut(s)	183, 214, 302, 447, 525
FaiI	YATR	9 cut(s)	98, 181, 212, 282, 284, 300, 353, 445, 523
FatI	CATG	5 cut(s)	179, 210, 298, 443, 521
Fnu4HI	GCNGC	2 cut(s)	32, 371
Fsp4HI	GCNGC	2 cut(s)	32, 371
FspBI	CTAG	1 cut(s)	79
FspI	TGCGCA	1 cut(s)	35
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	2 cut(s)	32, 371
HaeIII	GGCC	3 cut(s)	126, 238, 511
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	5 cut(s)	183, 214, 302, 447, 525
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	252
Hpy166II	GTNNAC	2 cut(s)	108, 475
Hpy188I	TCNGA	4 cut(s)	188, 257, 270, 434
Hpy188III	TCNNGA	3 cut(s)	40, 88, 332
Hpy8I	GTNNAC	2 cut(s)	108, 475
HpyAV	CCTTC	1 cut(s)	429
HpyCH4III	ACNGT	2 cut(s)	274, 472
HpyCH4V	TGCA	7 cut(s)	208, 214, 286, 379, 409, 424, 475
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 370, 376, 481
Hsp92II	CATG	5 cut(s)	183, 214, 302, 447, 525
HspAI	GCGC	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	60, 198
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	2 cut(s)	37, 252
Lsp1109I	GCAGC	2 cut(s)	18, 382
LweI	GCATC	3 cut(s)	45, 295, 396
MaeI	CTAG	1 cut(s)	79
MaeIII	GTNAC	2 cut(s)	172, 219
MalI	GATC	2 cut(s)	62, 200
MboI	GATC	2 cut(s)	60, 198
MfeI	CAATTG	1 cut(s)	380
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	5 cut(s)	115, 210, 228, 335, 409
Mph1103I	ATGCAT	2 cut(s)	288, 411
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	3 cut(s)	73, 338, 452
MslI	CAYNNNNRTG	1 cut(s)	13
MspA1I	CMGCKG	1 cut(s)	170
MspCI	CTTAAG	1 cut(s)	337
MunI	CAATTG	1 cut(s)	380
MwoI	GCNNNNNNNGC	4 cut(s)	31, 370, 376, 481
NdeII	GATC	2 cut(s)	60, 198
NlaIII	CATG	5 cut(s)	183, 214, 302, 447, 525
NlaIV	GGNNCC	2 cut(s)	6, 357
NmuCI	GTSAC	1 cut(s)	172
NsbI	TGCGCA	1 cut(s)	35
NsiI	ATGCAT	2 cut(s)	288, 411
NspI	RCATGY	1 cut(s)	214
PceI	AGGCCT	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	252
PkrI	GCNGC	2 cut(s)	33, 372
PsiI	TTATAA	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	6, 357
PspPI	GGNCC	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	426
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	13
SaqAI	TTAA	3 cut(s)	73, 338, 452
SatI	GCNGC	2 cut(s)	32, 371
Sau3AI	GATC	2 cut(s)	60, 198
Sau96I	GGNCC	1 cut(s)	124
SduI	GDGCHC	1 cut(s)	477
SetI	ASST	9 cut(s)	96, 172, 221, 251, 266, 346, 366, 375, 462
SfaNI	GCATC	3 cut(s)	45, 295, 396
SfcI	CTRYAG	1 cut(s)	422
SmiMI	CAYNNNNRTG	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	1 cut(s)	380
SseBI	AGGCCT	1 cut(s)	238
SsiI	CCGC	1 cut(s)	113
SspMI	CTAG	1 cut(s)	79
StuI	AGGCCT	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	274, 472
TaqI	TCGA	1 cut(s)	389
TasI	AATT	1 cut(s)	380
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	3 cut(s)	73, 338, 452
Tru9I	TTAA	3 cut(s)	73, 338, 452
TscAI	CASTG	2 cut(s)	201, 426
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	2 cut(s)	31, 370
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	3 cut(s)	170, 313, 387
TspRI	CASTG	2 cut(s)	201, 426
Vha464I	CTTAAG	1 cut(s)	337
VneI	GTGCAC	1 cut(s)	473
XceI	RCATGY	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	79
Zsp2I	ATGCAT	2 cut(s)	288, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.