Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006208

Physical Location & Seq

Genomic Coordinates Reverse (-)

22871424 .. 22872184

Gene Structure 761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g21750.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGTTCTAAAACATACTGATCCGACCGCCCACGCAGAGGTTACTGCCATAAGAGAGGCCTGTAAGAAGTTGAATCGGATAGAGCTCTCGGACTGTGAAATATATGCATCCTGTGAGCCATGCCCAATGTGCTTTGGTGCTATCCATCTTTCAAGACTTAAGAGGTTGGTTTACGGAGCTAAAGCCGAAGCTGCCATAGCAATTGGTTTCGATGCTTTCATTGCGGACGCGTTGAGGGGCACTGCATTTTACCAGAAGGCTCACATGGAGATCAAGAAAGCTGACGGGAACAGCGCGGTCATTGCCGAACAGGTATTTGAGAAAACAATGTCGAAATTTCACATGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

117

Amino Acids

12.87

Weight (kDa)

7.67

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05300 AT5G28050 AT5G28050 AT5G28050
fragaria_vesca	FvH4_6g03650
malus_domestica	MD04G1219800.v1.1 MD12G1236600.v1.1
prunus_persica	Prupe.1G103100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1
pyrus_communis	pycom04g19480 pycom12g21750
rosa_chinensis	RchiOBHm_Chr3g0452181
rosa_laevigata	RLG00000025620
rosa_multiflora	Rmu_sc0020870.1_g000006 Rmu_sc0042699.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435980 Rroxscaffold_6G00429320
rosa_rugosa	Rorug02G0638900 Rorug02G0639000
rosa_samantha	Rh3AG040800 Rh3BG042600 Rh3CG040900 Rh3DG041800
rosa_wichuraiana	Rw3G003120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	230, 296
AciI	CCGC	3 cut(s)	27, 224, 296
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	37
AflII	CTTAAG	1 cut(s)	158
AflIII	ACRYGT	2 cut(s)	228, 342
AgsI	TTSAA	2 cut(s)	73, 153
AluBI	AGCT	4 cut(s)	85, 179, 191, 281
AluI	AGCT	4 cut(s)	85, 179, 191, 281
Alw21I	GWGCWC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	296
BaeGI	GKGCMC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	153
BfrI	CTTAAG	1 cut(s)	158
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
BmsI	GCATC	2 cut(s)	116, 202
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse3DI	GCAATG	2 cut(s)	219, 300
BseGI	GGATG	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	2 cut(s)	219, 300
BseSI	GKGCMC	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	178
Bsh1236I	CGCG	2 cut(s)	230, 296
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	59
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	37
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	87, 242
Bsp143I	GATC	2 cut(s)	19, 270
BspACI	CCGC	3 cut(s)	27, 224, 296
BspANI	GGCC	1 cut(s)	59
BspFNI	CGCG	2 cut(s)	230, 296
BspPI	GGATC	1 cut(s)	14
BspTI	CTTAAG	1 cut(s)	158
BsrDI	GCAATG	2 cut(s)	219, 300
BssMI	GATC	2 cut(s)	19, 270
Bst4CI	ACNGT	1 cut(s)	95
BstAFI	CTTAAG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	107
BstFNI	CGCG	2 cut(s)	230, 296
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	2 cut(s)	22, 273
BstMBI	GATC	2 cut(s)	19, 270
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	5 cut(s)	129, 191, 197, 221, 302
BstNSI	RCATGY	1 cut(s)	346
BstSLI	GKGCMC	1 cut(s)	242
BstUI	CGCG	2 cut(s)	230, 296
BstV1I	GCAGC	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	107
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
CfoI	GCGC	1 cut(s)	296
CseI	GACGC	1 cut(s)	236
CviAII	CATG	3 cut(s)	120, 265, 343
CviJI	RGCY	8 cut(s)	59, 85, 118, 179, 185, 191, 260, 281
CviKI_1	RGCY	8 cut(s)	59, 85, 118, 179, 185, 191, 260, 281
DpnI	GATC	2 cut(s)	21, 272
DpnII	GATC	2 cut(s)	19, 270
Ecl136II	GAGCTC	1 cut(s)	85
Eco147I	AGGCCT	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	87
Eco53kI	GAGCTC	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	85
EcoT22I	ATGCAT	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	87
FaeI	CATG	3 cut(s)	123, 268, 346
FaiI	YATR	8 cut(s)	15, 50, 103, 105, 121, 197, 266, 344
FatI	CATG	3 cut(s)	119, 264, 342
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	94
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	192
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	59
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	3 cut(s)	123, 268, 346
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HinfI	GANTC	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	3 cut(s)	24, 78, 91
Hpy188III	TCNNGA	2 cut(s)	153, 274
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	2 cut(s)	107, 245
HpyF10VI	GCNNNNNNNGC	5 cut(s)	129, 191, 197, 221, 302
Hsp92II	CATG	3 cut(s)	123, 268, 346
HspAI	GCGC	1 cut(s)	294
Kzo9I	GATC	2 cut(s)	19, 270
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	4 cut(s)	73, 124, 266, 296
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	2 cut(s)	116, 202
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	2 cut(s)	21, 272
MboI	GATC	2 cut(s)	19, 270
MfeI	CAATTG	1 cut(s)	201
MhlI	GDGCHC	2 cut(s)	87, 242
MluCI	AATT	2 cut(s)	201, 335
MluI	ACGCGT	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	4 cut(s)	31, 49, 156, 228
Mph1103I	ATGCAT	1 cut(s)	109
MseI	TTAA	1 cut(s)	159
MspCI	CTTAAG	1 cut(s)	158
MunI	CAATTG	1 cut(s)	201
MvnI	CGCG	2 cut(s)	230, 296
MwoI	GCNNNNNNNGC	5 cut(s)	129, 191, 197, 221, 302
NdeII	GATC	2 cut(s)	19, 270
NlaIII	CATG	3 cut(s)	123, 268, 346
NsiI	ATGCAT	1 cut(s)	109
NspI	RCATGY	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	59
PciI	ACATGT	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	193
PscI	ACATGT	1 cut(s)	342
Psp124BI	GAGCTC	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	2 cut(s)	19, 270
SduI	GDGCHC	2 cut(s)	87, 242
SetI	ASST	7 cut(s)	42, 87, 167, 181, 193, 283, 315
SfaNI	GCATC	2 cut(s)	116, 202
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	201, 335
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	3 cut(s)	27, 224, 296
SstI	GAGCTC	1 cut(s)	87
StuI	AGGCCT	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	2 cut(s)	210, 332
TasI	AATT	2 cut(s)	201, 335
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	247
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	1 cut(s)	208
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	247
Vha464I	CTTAAG	1 cut(s)	158
XapI	RAATTY	1 cut(s)	335
XceI	RCATGY	1 cut(s)	346
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.