Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006208

Physical Location & Seq

Genomic Coordinates Reverse (-)

29367389 .. 29370678

Gene Structure 3290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G339100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCGGATGCTAATGTTAACCCTCCTCCATTGGTAGTGGTGGAAGCGAACGATGGAACCATTTCTGTGGCTTCTGCATTTGCTGCTCATCAACAAGTTGTACAGGATAGAGACCACAAATTCTTAACAGAAGCAGTTGGAGAAGCTTATAAGGGAGTTGAATGTGGAGATGGAGGGCCATTTGGCGCGGTTGTTGTTCGTAATGATGAAATAGTTGTCAGCTGTCACAACATGGTTTTGAAAAACACTGATCCGACTGCCCATGCAGAGGTTACTGCCATAAGAGAGGCCTGTAAGAAGCTCAATCAGATAGAGCTCGCAGACTGCGAAATATATGCATCTTGTGAGCCATGCCCAATGTGCTTTGGTGCTATTCATCTTTCAAGACTAAAGAGGTTGGTCTATGGAGCTAAAGCTGAAGCAGCGATAGCAATTGGGTTTGATGATTTCATTGCGGATGCACTAAGGGGCACTGCATATTATCAAAAAGCTCACTTGGAGATCAAGAAAGCTGATGGTAACGGTGCTGTTATTGCTGAACAAGTATTTGAGAAAACAAAGGCGAAATTTCCCATGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

194

Amino Acids

20.77

Weight (kDa)

5.35

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05300 AT5G28050 AT5G28050 AT5G28050
fragaria_vesca	FvH4_6g03650
malus_domestica	MD04G1219800.v1.1 MD12G1236600.v1.1
prunus_persica	Prupe.1G103100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1
pyrus_communis	pycom04g19480 pycom12g21750
rosa_chinensis	RchiOBHm_Chr3g0452181
rosa_laevigata	RLG00000025620
rosa_multiflora	Rmu_sc0020870.1_g000006 Rmu_sc0042699.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435980 Rroxscaffold_6G00429320
rosa_rugosa	Rorug02G0638900 Rorug02G0639000
rosa_samantha	Rh3AG040800 Rh3BG042600 Rh3CG040900 Rh3DG041800
rosa_wichuraiana	Rw3G003120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AccII	CGCG	1 cut(s)	188
AciI	CCGC	3 cut(s)	5, 188, 455
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	2 cut(s)	119, 566
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	3 cut(s)	161, 241, 384
AluBI	AGCT	8 cut(s)	146, 222, 301, 316, 410, 416, 491, 512
AluI	AGCT	8 cut(s)	146, 222, 301, 316, 410, 416, 491, 512
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	2 cut(s)	176, 288
ApeKI	GCWGC	2 cut(s)	83, 422
ApoI	RAATTY	2 cut(s)	119, 566
Asp700I	GAANNNNTTC	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	473
BanII	GRGCYC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	70, 434
BccI	CCATC	3 cut(s)	47, 164, 509
BcgI	CGANNNNNNTGC	2 cut(s)	317, 351
BcoDI	GTCTC	1 cut(s)	105
BisI	GCNGC	2 cut(s)	84, 423
BlsI	GCNGC	2 cut(s)	85, 424
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	58
BmsI	GCATC	2 cut(s)	347, 448
BsaI	GGTCTC	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	450
BseGI	GGATG	2 cut(s)	13, 463
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMI	GCAATG	1 cut(s)	450
BseRI	GAGGAG	1 cut(s)	15
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	2 cut(s)	70, 434
Bsh1236I	CGCG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	178, 290
BsiHKAI	GWGCWC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	105
BsnI	GGCC	2 cut(s)	178, 290
Bso31I	GGTCTC	1 cut(s)	105
Bsp1286I	GDGCHC	2 cut(s)	318, 473
Bsp1407I	TGTACA	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	250, 501
BspACI	CCGC	3 cut(s)	5, 188, 455
BspANI	GGCC	2 cut(s)	178, 290
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	450
BsrGI	TGTACA	1 cut(s)	100
BssMI	GATC	2 cut(s)	250, 501
Bst4CI	ACNGT	1 cut(s)	524
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstAUI	TGTACA	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	464
BstF5I	GGATG	2 cut(s)	13, 463
BstFNI	CGCG	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	2 cut(s)	253, 504
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	2 cut(s)	250, 501
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 360, 422, 428, 533
BstSLI	GKGCMC	1 cut(s)	473
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	2 cut(s)	70, 434
BstXI	CCANNNNNNTGG	1 cut(s)	67
BsuRI	GGCC	2 cut(s)	178, 290
BtsCI	GGATG	2 cut(s)	13, 463
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	246, 471
Cac8I	GCNNGC	1 cut(s)	318
CfoI	GCGC	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	4 cut(s)	232, 263, 351, 574
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	2 cut(s)	252, 503
DpnII	GATC	2 cut(s)	250, 501
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	316
Eco147I	AGGCCT	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	316
EcoT22I	ATGCAT	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	318
FaeI	CATG	4 cut(s)	235, 266, 354, 577
FatI	CATG	4 cut(s)	231, 262, 350, 573
Fnu4HI	GCNGC	2 cut(s)	84, 423
FokI	GGATG	2 cut(s)	20, 470
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	2 cut(s)	84, 423
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	2 cut(s)	84, 423
HaeIII	GGCC	2 cut(s)	178, 290
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	4 cut(s)	235, 266, 354, 577
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	144
HpaI	GTTAAC	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	255, 309
Hpy188III	TCNNGA	2 cut(s)	384, 505
Hpy8I	GTNNAC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4V	TGCA	5 cut(s)	77, 266, 338, 461, 476
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 360, 422, 428, 533
HpyF3I	CTNAG	1 cut(s)	464
Hsp92II	CATG	4 cut(s)	235, 266, 354, 577
HspAI	GCGC	1 cut(s)	186
KspAI	GTTAAC	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	250, 501
LmnI	GCTCC	1 cut(s)	407
LpnPI	CCDG	2 cut(s)	89, 304
Lsp1109I	GCAGC	2 cut(s)	70, 434
LweI	GCATC	2 cut(s)	347, 448
MaeIII	GTNAC	3 cut(s)	224, 271, 518
MalI	GATC	2 cut(s)	252, 503
MboI	GATC	2 cut(s)	250, 501
MfeI	CAATTG	1 cut(s)	432
MhlI	GDGCHC	2 cut(s)	318, 473
MluCI	AATT	3 cut(s)	119, 432, 566
MmeI	TCCRAC	2 cut(s)	118, 278
MnlI	CCTC	6 cut(s)	33, 36, 167, 262, 280, 387
Mph1103I	ATGCAT	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	61
MseI	TTAA	2 cut(s)	18, 125
MslI	CAYNNNNRTG	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	222
MunI	CAATTG	1 cut(s)	432
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	5 cut(s)	83, 360, 422, 428, 533
NdeII	GATC	2 cut(s)	250, 501
NlaIII	CATG	4 cut(s)	235, 266, 354, 577
NlaIV	GGNNCC	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	224
NsiI	ATGCAT	1 cut(s)	340
PceI	AGGCCT	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	85, 424
PsiI	TTATAA	1 cut(s)	150
Psp124BI	GAGCTC	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	222
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
RseI	CAYNNNNRTG	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	18, 125
SatI	GCNGC	2 cut(s)	84, 423
Sau3AI	GATC	2 cut(s)	250, 501
Sau96I	GGNCC	1 cut(s)	176
SduI	GDGCHC	2 cut(s)	318, 473
SfaNI	GCATC	2 cut(s)	347, 448
SmiMI	CAYNNNNRTG	1 cut(s)	65
Sse9I	AATT	3 cut(s)	119, 432, 566
SseBI	AGGCCT	1 cut(s)	290
SsiI	CCGC	3 cut(s)	5, 188, 455
SstI	GAGCTC	1 cut(s)	318
StuI	AGGCCT	1 cut(s)	290
TaaI	ACNGT	1 cut(s)	524
TasI	AATT	3 cut(s)	119, 432, 566
TatI	WGTACW	1 cut(s)	100
Tru1I	TTAA	2 cut(s)	18, 125
Tru9I	TTAA	2 cut(s)	18, 125
TscAI	CASTG	2 cut(s)	253, 478
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	2 cut(s)	83, 422
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	3 cut(s)	222, 365, 439
TspRI	CASTG	2 cut(s)	253, 478
XapI	RAATTY	2 cut(s)	119, 566
XmnI	GAANNNNTTC	1 cut(s)	61
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.