Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006208

Physical Location & Seq

Genomic Coordinates Reverse (-)

21192643 .. 21193495

Gene Structure 853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19480.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGTTCTAAAACACACTGATCCGACTGCCCATGCAGAGGTTACTGCCATAAGAGAGGCCTGTAAGAAGCTCAATCAGATCGAGCTCGCAGACTGTGAAATATATGCATCCTGTGAGCCATGCCCAATGTGCTTTGGTGCTATCCATCTTTCAAGACTTAAGAGGTTGGTTTACGGAGCTAAGGCTGAAGCCGCCATAGCAATTGGCTTCGATGATTTCATTGCGGACGCGTTGAGGGGCACTGCATTTTATCAGAAGGCTAACATGGAGATCAAGAAGGCCGACGGGAACGGCGCGGTGATTGCTGAACAAGTATTCGAGAAAACGAAGTCCAAATTTCACATGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

117

Amino Acids

12.81

Weight (kDa)

6.89

Isoelectric Point (pI)

26.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05300 AT5G28050 AT5G28050 AT5G28050
fragaria_vesca	FvH4_6g03650
malus_domestica	MD04G1219800.v1.1 MD12G1236600.v1.1
prunus_persica	Prupe.1G103100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1
pyrus_communis	pycom04g19480 pycom12g21750
rosa_chinensis	RchiOBHm_Chr3g0452181
rosa_laevigata	RLG00000025620
rosa_multiflora	Rmu_sc0020870.1_g000006 Rmu_sc0042699.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435980 Rroxscaffold_6G00429320
rosa_rugosa	Rorug02G0638900 Rorug02G0639000
rosa_samantha	Rh3AG040800 Rh3BG042600 Rh3CG040900 Rh3DG041800
rosa_wichuraiana	Rw3G003120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	230, 296
AciI	CCGC	3 cut(s)	192, 224, 296
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	37
AflII	CTTAAG	1 cut(s)	158
AflIII	ACRYGT	2 cut(s)	228, 342
AgsI	TTSAA	1 cut(s)	153
AluBI	AGCT	3 cut(s)	70, 85, 179
AluI	AGCT	3 cut(s)	70, 85, 179
Alw21I	GWGCWC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	2 cut(s)	57, 279
ApoI	RAATTY	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	310
BaeGI	GKGCMC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	87
BccI	CCATC	1 cut(s)	153
BceAI	ACGGC	1 cut(s)	307
BfrI	CTTAAG	1 cut(s)	158
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
BmsI	GCATC	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	1 cut(s)	219
BseSI	GKGCMC	1 cut(s)	242
Bsh1236I	CGCG	2 cut(s)	230, 296
BshFI	GGCC	2 cut(s)	59, 281
BsiHKAI	GWGCWC	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	37
BsnI	GGCC	2 cut(s)	59, 281
Bsp1286I	GDGCHC	2 cut(s)	87, 242
Bsp143I	GATC	3 cut(s)	19, 78, 270
BspACI	CCGC	3 cut(s)	192, 224, 296
BspANI	GGCC	2 cut(s)	59, 281
BspFNI	CGCG	2 cut(s)	230, 296
BspPI	GGATC	1 cut(s)	14
BspTI	CTTAAG	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	219
BssMI	GATC	3 cut(s)	19, 78, 270
Bst4CI	ACNGT	1 cut(s)	95
BstAFI	CTTAAG	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	107
BstFNI	CGCG	2 cut(s)	230, 296
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	3 cut(s)	22, 81, 273
BstMBI	GATC	3 cut(s)	19, 78, 270
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 191, 197, 302
BstNSI	RCATGY	1 cut(s)	346
BstSLI	GKGCMC	1 cut(s)	242
BstUI	CGCG	2 cut(s)	230, 296
BsuRI	GGCC	2 cut(s)	59, 281
BtsCI	GGATG	1 cut(s)	107
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	2 cut(s)	15, 240
Cac8I	GCNNGC	1 cut(s)	87
CfoI	GCGC	1 cut(s)	296
CseI	GACGC	1 cut(s)	236
CviAII	CATG	4 cut(s)	32, 120, 265, 343
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	3 cut(s)	21, 80, 272
DpnII	GATC	3 cut(s)	19, 78, 270
Ecl136II	GAGCTC	1 cut(s)	85
Eco147I	AGGCCT	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	87
Eco53kI	GAGCTC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	85
EcoT22I	ATGCAT	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	87
FaeI	CATG	4 cut(s)	35, 123, 268, 346
FaiI	YATR	8 cut(s)	33, 50, 103, 105, 121, 197, 266, 344
FatI	CATG	4 cut(s)	31, 119, 264, 342
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	94
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	192
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	59, 281
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	4 cut(s)	35, 123, 268, 346
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	3 cut(s)	24, 78, 255
Hpy188III	TCNNGA	3 cut(s)	153, 274, 319
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	2 cut(s)	250, 271
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	3 cut(s)	35, 107, 245
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 191, 197, 302
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	4 cut(s)	35, 123, 268, 346
HspAI	GCGC	1 cut(s)	294
Kzo9I	GATC	3 cut(s)	19, 78, 270
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	2 cut(s)	73, 124
LweI	GCATC	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	3 cut(s)	21, 80, 272
MboI	GATC	3 cut(s)	19, 78, 270
MfeI	CAATTG	1 cut(s)	201
MhlI	GDGCHC	2 cut(s)	87, 242
MluCI	AATT	2 cut(s)	201, 335
MluI	ACGCGT	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	4 cut(s)	31, 49, 156, 228
Mph1103I	ATGCAT	1 cut(s)	109
MseI	TTAA	1 cut(s)	159
MspCI	CTTAAG	1 cut(s)	158
MunI	CAATTG	1 cut(s)	201
MvnI	CGCG	2 cut(s)	230, 296
MwoI	GCNNNNNNNGC	4 cut(s)	129, 191, 197, 302
NdeII	GATC	3 cut(s)	19, 78, 270
NlaIII	CATG	4 cut(s)	35, 123, 268, 346
NsiI	ATGCAT	1 cut(s)	109
NspI	RCATGY	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	59
PciI	ACATGT	1 cut(s)	342
PkrI	GCNGC	1 cut(s)	193
PscI	ACATGT	1 cut(s)	342
Psp124BI	GAGCTC	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	3 cut(s)	19, 78, 270
SduI	GDGCHC	2 cut(s)	87, 242
SetI	ASST	5 cut(s)	42, 72, 87, 167, 181
SfaNI	GCATC	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	201, 335
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	3 cut(s)	192, 224, 296
SstI	GAGCTC	1 cut(s)	87
StuI	AGGCCT	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	3 cut(s)	81, 210, 318
TasI	AATT	2 cut(s)	201, 335
TauI	GCSGC	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	2 cut(s)	22, 247
TspDTI	ATGAA	1 cut(s)	208
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	2 cut(s)	22, 247
Vha464I	CTTAAG	1 cut(s)	158
XapI	RAATTY	1 cut(s)	335
XceI	RCATGY	1 cut(s)	346
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.