Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006208

Physical Location & Seq

Genomic Coordinates Reverse (-)

31043562 .. 31045985

Gene Structure 2424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1236600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCGGAAGCTAACGTGGTGGAAGCGCAAGACAGAACCCTTTCTGTGGCCTCTGCATTTGCTGCACATCAAGAAGTTGTGCAGGATAGAGATCACAAATTCTTAACAGAAGCAGTTGGAGAAGCTTATAAGGGAGTGGATTGTGGAGACGGCGGGCCATTTGGTGCAGTTATTGTTCGCGATGATGAAATAGTAGCCTGTAAGAAGCTGAACCAGATAGAGCTCTCGGACTGTGAAATATATGCATCCTGTGAGCCATGCCCAATGTGCTTTGGTGCTATCCATCTTTCAAGACTTAAGAGGTTGGTTTACGGAGCTAAAGCCGAAGCCGCCATAGCAATTGGTTTCGATGATTTCATTGCGTACGCGTTGAGGGGCACTGCATTTTACCAGAAGGCTCACATGGAGATCAAGAAAGCCGACGGGAACGGTGCGGTAATTGCCGAGCAGGTATTTGAGAAAACAAAGTCGAAATTTCACATGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

163

Amino Acids

17.69

Weight (kDa)

5.35

Isoelectric Point (pI)

30.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	66 - 105	2.8e-08	Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam	PF14437	66 - 154	5.8e-10	MafB19-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05300 AT5G28050 AT5G28050 AT5G28050
fragaria_vesca	FvH4_6g03650
malus_domestica	MD04G1219800.v1.1 MD12G1236600.v1.1
prunus_persica	Prupe.1G103100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1
pyrus_communis	pycom04g19480 pycom12g21750
rosa_chinensis	RchiOBHm_Chr3g0452181
rosa_laevigata	RLG00000025620
rosa_multiflora	Rmu_sc0020870.1_g000006 Rmu_sc0042699.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435980 Rroxscaffold_6G00429320
rosa_rugosa	Rorug02G0638900 Rorug02G0639000
rosa_samantha	Rh3AG040800 Rh3BG042600 Rh3CG040900 Rh3DG041800
rosa_wichuraiana	Rw3G003120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	129
Acc36I	ACCTGC	1 cut(s)	439
AccII	CGCG	2 cut(s)	180, 368
AciI	CCGC	4 cut(s)	5, 153, 330, 434
AcsI	RAATTY	2 cut(s)	98, 473
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	1 cut(s)	46
AflII	CTTAAG	1 cut(s)	296
AflIII	ACRYGT	2 cut(s)	366, 480
AgsI	TTSAA	1 cut(s)	291
AluBI	AGCT	5 cut(s)	11, 125, 208, 223, 317
AluI	AGCT	5 cut(s)	11, 125, 208, 223, 317
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	141
AoxI	GGCC	2 cut(s)	48, 155
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	2 cut(s)	98, 473
Asp700I	GAANNNNTTC	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	291
BceAI	ACGGC	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	439
BisI	GCNGC	2 cut(s)	63, 330
BlsI	GCNGC	2 cut(s)	64, 331
BmgT120I	GGNCC	1 cut(s)	155
BmsI	GCATC	1 cut(s)	254
BsaBI	GATNNNNATC	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse3DI	GCAATG	1 cut(s)	357
Bse8I	GATNNNNATC	1 cut(s)	90
BseGI	GGATG	1 cut(s)	245
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMI	GCAATG	1 cut(s)	357
BseSI	GKGCMC	1 cut(s)	380
BseXI	GCAGC	1 cut(s)	49
BsgI	GTGCAG	3 cut(s)	48, 101, 186
Bsh1236I	CGCG	2 cut(s)	180, 368
BshFI	GGCC	2 cut(s)	50, 157
BsiHKAI	GWGCWC	1 cut(s)	225
BsiWI	CGTACG	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	141
BsmBI	CGTCTC	1 cut(s)	141
BsnI	GGCC	2 cut(s)	50, 157
Bsp1286I	GDGCHC	2 cut(s)	225, 380
Bsp143I	GATC	2 cut(s)	91, 408
Bsp68I	TCGCGA	1 cut(s)	180
BspACI	CCGC	4 cut(s)	5, 153, 330, 434
BspANI	GGCC	2 cut(s)	50, 157
BspFNI	CGCG	2 cut(s)	180, 368
BspMI	ACCTGC	1 cut(s)	439
BspTI	CTTAAG	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	357
BssMI	GATC	2 cut(s)	91, 408
Bst4CI	ACNGT	2 cut(s)	233, 431
BstAFI	CTTAAG	1 cut(s)	296
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	245
BstFNI	CGCG	2 cut(s)	180, 368
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	2 cut(s)	94, 411
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	2 cut(s)	91, 408
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 267, 329, 335, 440
BstNSI	RCATGY	1 cut(s)	484
BstSLI	GKGCMC	1 cut(s)	380
BstUI	CGCG	2 cut(s)	180, 368
BstV1I	GCAGC	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	50, 157
BtgZI	GCGATG	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	245
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	378
BtuMI	TCGCGA	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	155
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	3 cut(s)	258, 403, 481
CviQI	GTAC	1 cut(s)	364
DpnI	GATC	2 cut(s)	93, 410
DpnII	GATC	2 cut(s)	91, 408
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	225
Eco53kI	GAGCTC	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	223
EcoT22I	ATGCAT	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	141
FaeI	CATG	3 cut(s)	261, 406, 484
FaiI	YATR	7 cut(s)	129, 241, 243, 259, 335, 404, 482
FatI	CATG	3 cut(s)	257, 402, 480
FauI	CCCGC	1 cut(s)	146
Fnu4HI	GCNGC	2 cut(s)	63, 330
FokI	GGATG	1 cut(s)	232
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	2 cut(s)	63, 330
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	2 cut(s)	63, 330
HaeIII	GGCC	2 cut(s)	50, 157
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	3 cut(s)	261, 406, 484
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HindIII	AAGCTT	1 cut(s)	123
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	4 cut(s)	71, 179, 291, 412
Hpy8I	GTNNAC	1 cut(s)	310
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	2 cut(s)	233, 431
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	6 cut(s)	56, 65, 82, 167, 245, 383
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 267, 329, 335, 440
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	261, 406, 484
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	2 cut(s)	91, 408
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	6 cut(s)	68, 211, 227, 262, 404, 434
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	1 cut(s)	254
MaeII	ACGT	1 cut(s)	15
MalI	GATC	2 cut(s)	93, 410
MboI	GATC	2 cut(s)	91, 408
MfeI	CAATTG	1 cut(s)	339
MhlI	GDGCHC	2 cut(s)	225, 380
MluCI	AATT	4 cut(s)	98, 339, 438, 473
MluI	ACGCGT	1 cut(s)	366
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	3 cut(s)	61, 294, 366
Mph1103I	ATGCAT	1 cut(s)	247
MroXI	GAANNNNTTC	1 cut(s)	40
MseI	TTAA	2 cut(s)	104, 297
MspCI	CTTAAG	1 cut(s)	296
MunI	CAATTG	1 cut(s)	339
MvnI	CGCG	2 cut(s)	180, 368
MwoI	GCNNNNNNNGC	5 cut(s)	62, 267, 329, 335, 440
NdeII	GATC	2 cut(s)	91, 408
NlaIII	CATG	3 cut(s)	261, 406, 484
NmeAIII	GCCGAG	1 cut(s)	469
NruI	TCGCGA	1 cut(s)	180
NsiI	ATGCAT	1 cut(s)	247
NspI	RCATGY	1 cut(s)	484
PciI	ACATGT	1 cut(s)	480
PdmI	GAANNNNTTC	1 cut(s)	40
Pfl23II	CGTACG	1 cut(s)	363
PkrI	GCNGC	2 cut(s)	64, 331
PscI	ACATGT	1 cut(s)	480
PsiI	TTATAA	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	225
PspLI	CGTACG	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	155
RruI	TCGCGA	1 cut(s)	180
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
SacI	GAGCTC	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	104, 297
SatI	GCNGC	2 cut(s)	63, 330
Sau3AI	GATC	2 cut(s)	91, 408
Sau96I	GGNCC	1 cut(s)	155
SduI	GDGCHC	2 cut(s)	225, 380
SetI	ASST	8 cut(s)	13, 18, 127, 210, 225, 305, 319, 453
SfaNI	GCATC	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	4 cut(s)	98, 339, 438, 473
SsiI	CCGC	4 cut(s)	5, 153, 330, 434
SstI	GAGCTC	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	233, 431
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	348, 470
TasI	AATT	4 cut(s)	98, 339, 438, 473
TauI	GCSGC	1 cut(s)	332
Tru1I	TTAA	2 cut(s)	104, 297
Tru9I	TTAA	2 cut(s)	104, 297
TscAI	CASTG	1 cut(s)	385
TseI	GCWGC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	201, 346
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	1 cut(s)	385
Vha464I	CTTAAG	1 cut(s)	296
XapI	RAATTY	2 cut(s)	98, 473
XceI	RCATGY	1 cut(s)	484
XmnI	GAANNNNTTC	1 cut(s)	40
Zsp2I	ATGCAT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.