Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006208

Physical Location & Seq

Genomic Coordinates Forward (+)

1992196 .. 1994866

Gene Structure 2671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g03650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCTGATGCTAACGGCAACGCCATTGAGGCCAACGTGGTGGAGACGAAAGATGGAACCATTTCTGTGGCTTCTGCTTTTGCTGCGCATCAAGAAGTTGTACAGGATAGAGACCACAAGTTCTTATCACAGGCAGTTCAGGAAGCTTATAAGGGAGTTGACAGTGGCGATGGAGGGCCATTTGGTGCAGTTATTGTTCGTAATGATGAAGTAGTTGTGAGCTGTCACAACATGGTTCTGACACATACTGATCCAACTGCACATGCGGAGGTTACTGCTATAAGAGAGGCATGTAAGAAGCTGAATCAGATAGAGCTGTCAGATTGTGAAATATATGCATCTTGTGAGCCATGTCCAATGTGTTTTGGTGCTATTCATCTATCAAGACTTAAGAGGTTGGTTTATGGAGCCAAAGCTGAAGCAGCTATTGCAATTGGATTTGATGATTTCATTGCCGATGCATTGAGGGGCACTGCATTTTATCAGAAGGCTCACTTGGAGATCAAGAAAGCTGACGGCAACGGTGCAATGCTTGCTGAACAAGTTTTTGAGAAAACAAAGGCCAAGTTTGCCATGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

194

Amino Acids

20.8

Weight (kDa)

5.33

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	37 - 136	3.3e-27	Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam	PF14437	41 - 142	3.3e-20	MafB19-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05300 AT5G28050 AT5G28050 AT5G28050
fragaria_vesca	FvH4_6g03650
malus_domestica	MD04G1219800.v1.1 MD12G1236600.v1.1
prunus_persica	Prupe.1G103100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1 Prupe.6G339100_v2.0.a1
pyrus_communis	pycom04g19480 pycom12g21750
rosa_chinensis	RchiOBHm_Chr3g0452181
rosa_laevigata	RLG00000025620
rosa_multiflora	Rmu_sc0020870.1_g000006 Rmu_sc0042699.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435980 Rroxscaffold_6G00429320
rosa_rugosa	Rorug02G0638900 Rorug02G0639000
rosa_samantha	Rh3AG040800 Rh3BG042600 Rh3CG040900 Rh3DG041800
rosa_wichuraiana	Rw3G003120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
Acc16I	TGCGCA	1 cut(s)	87
AciI	CCGC	1 cut(s)	266
AclWI	GGATC	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	1 cut(s)	102
AflII	CTTAAG	1 cut(s)	389
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AluBI	AGCT	7 cut(s)	146, 222, 301, 316, 416, 425, 512
AluI	AGCT	7 cut(s)	146, 222, 301, 316, 416, 425, 512
Alw26I	GTCTC	2 cut(s)	38, 105
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	3 cut(s)	30, 176, 561
ApeKI	GCWGC	2 cut(s)	83, 422
Asp700I	GAANNNNTTC	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	473
BbvI	GCAGC	2 cut(s)	70, 434
BccI	CCATC	2 cut(s)	47, 164
BceAI	ACGGC	2 cut(s)	31, 532
BcoDI	GTCTC	2 cut(s)	38, 105
BfrI	CTTAAG	1 cut(s)	389
BglI	GCCNNNNNGGC	1 cut(s)	29
BisI	GCNGC	2 cut(s)	84, 423
BlsI	GCNGC	2 cut(s)	85, 424
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	58, 409
BmsI	GCATC	3 cut(s)	97, 347, 448
BsaI	GGTCTC	1 cut(s)	105
Bse3DI	GCAATG	2 cut(s)	450, 534
BseMI	GCAATG	2 cut(s)	450, 534
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	2 cut(s)	70, 434
BsgI	GTGCAG	2 cut(s)	207, 243
BshFI	GGCC	3 cut(s)	32, 178, 563
BsmAI	GTCTC	2 cut(s)	38, 105
BsmBI	CGTCTC	1 cut(s)	38
BsnI	GGCC	3 cut(s)	32, 178, 563
Bso31I	GGTCTC	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp1407I	TGTACA	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	250, 501
BspACI	CCGC	1 cut(s)	266
BspANI	GGCC	3 cut(s)	32, 178, 563
BspLI	GGNNCC	2 cut(s)	58, 409
BspPI	GGATC	1 cut(s)	245
BspTI	CTTAAG	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	105
BsrDI	GCAATG	2 cut(s)	450, 534
BsrGI	TGTACA	1 cut(s)	100
BssMI	GATC	2 cut(s)	250, 501
Bst4CI	ACNGT	2 cut(s)	164, 524
BstAFI	CTTAAG	1 cut(s)	389
BstAPI	GCANNNNNTGC	2 cut(s)	428, 533
BstAUI	TGTACA	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	534
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	2 cut(s)	253, 504
BstMAI	GTCTC	2 cut(s)	38, 105
BstMBI	GATC	2 cut(s)	250, 501
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 83, 422, 428, 533, 569
BstNSI	RCATGY	2 cut(s)	266, 294
BstSLI	GKGCMC	1 cut(s)	473
BstV1I	GCAGC	2 cut(s)	70, 434
BstXI	CCANNNNNNTGG	2 cut(s)	40, 67
BsuRI	GGCC	3 cut(s)	32, 178, 563
BtgZI	GCGATG	1 cut(s)	183
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	169, 471
Cac8I	GCNNGC	1 cut(s)	534
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	5 cut(s)	232, 263, 291, 351, 574
CviQI	GTAC	1 cut(s)	101
DpnI	GATC	2 cut(s)	252, 503
DpnII	GATC	2 cut(s)	250, 501
Eco31I	GGTCTC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	438
EcoT22I	ATGCAT	2 cut(s)	340, 463
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	5 cut(s)	235, 266, 294, 354, 577
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FatI	CATG	5 cut(s)	231, 262, 290, 350, 573
Fnu4HI	GCNGC	2 cut(s)	84, 423
Fsp4HI	GCNGC	2 cut(s)	84, 423
FspI	TGCGCA	1 cut(s)	87
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	2 cut(s)	84, 423
HaeIII	GGCC	3 cut(s)	32, 178, 563
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	5 cut(s)	235, 266, 294, 354, 577
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	144
HinfI	GANTC	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	4 cut(s)	240, 309, 322, 486
Hpy188III	TCNNGA	4 cut(s)	92, 140, 384, 505
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	1 cut(s)	481
HpyCH4III	ACNGT	2 cut(s)	164, 524
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	7 cut(s)	188, 260, 338, 431, 461, 476, 527
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 83, 422, 428, 533, 569
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	5 cut(s)	235, 266, 294, 354, 577
HspAI	GCGC	1 cut(s)	86
Kzo9I	GATC	2 cut(s)	250, 501
LmnI	GCTCC	1 cut(s)	407
LpnPI	CCDG	3 cut(s)	89, 116, 125
Lsp1109I	GCAGC	2 cut(s)	70, 434
LweI	GCATC	3 cut(s)	97, 347, 448
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	2 cut(s)	224, 271
MalI	GATC	2 cut(s)	252, 503
MboI	GATC	2 cut(s)	250, 501
MfeI	CAATTG	1 cut(s)	432
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	1 cut(s)	432
MmeI	TCCRAC	1 cut(s)	278
MnlI	CCTC	6 cut(s)	22, 167, 262, 280, 387, 459
Mph1103I	ATGCAT	2 cut(s)	340, 463
MroXI	GAANNNNTTC	1 cut(s)	61
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	65
MspCI	CTTAAG	1 cut(s)	389
MunI	CAATTG	1 cut(s)	432
MwoI	GCNNNNNNNGC	6 cut(s)	29, 83, 422, 428, 533, 569
NdeII	GATC	2 cut(s)	250, 501
NlaIII	CATG	5 cut(s)	235, 266, 294, 354, 577
NlaIV	GGNNCC	2 cut(s)	58, 409
NmuCI	GTSAC	1 cut(s)	224
NsbI	TGCGCA	1 cut(s)	87
NsiI	ATGCAT	2 cut(s)	340, 463
NspI	RCATGY	2 cut(s)	266, 294
PdmI	GAANNNNTTC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	85, 424
PsiI	TTATAA	1 cut(s)	150
PspN4I	GGNNCC	2 cut(s)	58, 409
PspPI	GGNCC	1 cut(s)	176
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	2 cut(s)	84, 423
Sau3AI	GATC	2 cut(s)	250, 501
Sau96I	GGNCC	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	473
SfaNI	GCATC	3 cut(s)	97, 347, 448
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	1 cut(s)	432
SsiI	CCGC	1 cut(s)	266
TaaI	ACNGT	2 cut(s)	164, 524
TaiI	ACGT	1 cut(s)	39
TasI	AATT	1 cut(s)	432
TatI	WGTACW	1 cut(s)	100
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	2 cut(s)	169, 478
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	2 cut(s)	83, 422
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	3 cut(s)	222, 365, 439
TspRI	CASTG	2 cut(s)	169, 478
Vha464I	CTTAAG	1 cut(s)	389
XceI	RCATGY	2 cut(s)	266, 294
XmnI	GAANNNNTTC	1 cut(s)	61
Zsp2I	ATGCAT	2 cut(s)	340, 463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.