AT5G30510

Ribosomal protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013214
Physical Location & Seq
Reverse (-)
11619000 .. 11621298
2299 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G30510.1

Sequence Viewer

Length: 1251 bp
ATGGCGTCTTTGGCTCAGCAATTCTCGGGATTGAGATGTTCCCCACTCTCTTCTTCTTCTAGGTTATCGAGGAGAGCTTCGAAGAACTTTCCCCAGAACAAATCTGCCTCTGTTTCTCCGACTATTGTCGCCGCGGTTGCAATGTCTAGCGGTCAAACAAAGGAGCGTCTTGAGCTGAAGAAGATGTTCGAAGATGCTTATGAACGATGTAGAACTTCTCCTATGGAAGGTGTTGCTTTCACCGTCGACGATTTCGCTGCTGCTATTGAACAATACGACTTCAATTCCGAAATCGGCACTAGGGTAAAAGGAACAGTGTTCAAGACTGATGCAAATGGTGCATTAGTTGACATTTCTGCAAAGTCATCGGCTTACTTGTCGGTAGAACAAGCGTGTATTCATAGAATTAAGCATGTGGAAGAAGCTGGTATTGTACCTGGTATGGTGGAAGAGTTTGTCATCATTGGTGAAAATGAAAGTGATGACAGTTTGCTATTGAGCTTAAGGAATATTCAATACGAACTTGCTTGGGAACGTTGCAGGCAGCTTCAGGCTGAGGATGTTATTGTCAAGGCTAAGGTTATTGGTGCTAACAAAGGTGGATTGGTTGCTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTTTTCGCAGATATCATCGAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTGGAGGTTGATGAGGAACAAACAAAGCTTGTCCTCAGCAACCGTAAAGCTGTAGCAGATAGCCAAGCTCAGCTTGGAATTGGATCTGTGGTCCTCGGAGTTGTTCAGAGCTTGAAACCTTATGGTGCCTTCATTGACATTGGTGGAATCAATGGGCTTCTTCATGTCAGTCAGATAAGTCATGACCGTGTCTCAGATATCGCAACTGTTCTTCAGCCTGGTGACACTTTGAAGGTTATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACAAAGAAGCTGGAGCCAACACCTGGTGATATGATTCGTAACCCAAAACTTGTGTTCGAGAAGGCTGAGGAGATGGCTCAGACATTCAGACAGAGAATTGCGCAAGCAGAAGCCATGGCTCGTGCAGACATGCTTCGCTTCCAACCTGAGAGTGGACTGACGCTGAGTTCTGACGGGATACTAGGACCACTCGGATCTGAGTTACCAGATGATGGCGTAGATCTAACGGTCGACGACATTCCTTCTGCAGTTGATATTTAG

Protein Analysis

416

Amino Acids

45.11

Weight (kDa)

5.13

Isoelectric Point (pI)

38.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 186 - 249 4.2e-07 S1 RNA binding domain
S1 PF00575 263 - 332 4.7e-18 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G30510
fragaria_vesca FvH4_4g20780 FvH4_4g20780
malus_domestica MD13G1147900.v1.1 MD16G1147700.v1.1
prunus_persica Prupe.1G111400_v2.0.a1
pyrus_communis pycom16g12610 pycom16g12620
rosa_chinensis RchiOBHm_Chr4g0426221
rosa_laevigata RLG00000007309
rosa_multiflora Rmu_sc0000730.1_g000026
rosa_roxburghii Rroxscaffold_5G00368240
rosa_rugosa Rorug04G0209700
rosa_samantha Rh4AG266600 Rh4BG272600 Rh4CG285800 Rh4DG268900
rosa_wichuraiana Rw4G023050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1092
AccB1I GGYRCC 1 cut(s) 833
AccB7I CCANNNNNTGG 2 cut(s) 1013, 1202
AccI GTMKAC 2 cut(s) 246, 1221
AccII CGCG 1 cut(s) 134
AciI CCGC 3 cut(s) 132, 134, 150
AclI AACGTT 1 cut(s) 535
AclWI GGATC 2 cut(s) 799, 1192
AcuI CTGAAG 4 cut(s) 197, 533, 693, 905
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 1016
AfaI GTAC 1 cut(s) 435
AfiI CCNNNNNNNGG 4 cut(s) 227, 1013, 1142, 1202
AflII CTTAAG 2 cut(s) 502, 701
AgsI TTSAA 7 cut(s) 269, 283, 322, 515, 686, 823, 940
AjnI CCWGG 3 cut(s) 436, 925, 1012
AleI CACNNNNGTG 1 cut(s) 963
Alw26I GTCTC 2 cut(s) 904, 989
AlwI GGATC 2 cut(s) 799, 1192
AlwNI CAGNNNCTG 1 cut(s) 671
Ama87I CYCGRG 1 cut(s) 25
ApeKI GCWGC 5 cut(s) 257, 260, 544, 665, 668
Asp700I GAANNNNTTC 3 cut(s) 185, 624, 678
AspLEI GCGC 1 cut(s) 1093
AspS9I GGNCC 2 cut(s) 799, 1175
AsuHPI GGTGA 4 cut(s) 232, 479, 941, 1028
AsuII TTCGAA 2 cut(s) 80, 189
AvaI CYCGRG 1 cut(s) 25
AvaII GGWCC 2 cut(s) 799, 1175
BaeGI GKGCMC 1 cut(s) 642
BanI GGYRCC 1 cut(s) 833
BauI CACGAG 1 cut(s) 1110
BbsI GAAGAC 1 cut(s) 617
BbvCI CCTCAGC 3 cut(s) 555, 743, 1056
BbvI GCAGC 5 cut(s) 244, 247, 556, 677, 680
BccI CCATC 2 cut(s) 1057, 1196
BcgI CGANNNNNNTGC 4 cut(s) 239, 273, 348, 382
BciT130I CCWGG 3 cut(s) 438, 927, 1014
BciVI GTATCC 1 cut(s) 1161
BcoDI GTCTC 2 cut(s) 904, 989
BfaI CTAG 4 cut(s) 60, 147, 300, 1172
BfmI CTRYAG 2 cut(s) 759, 1236
BfrI CTTAAG 2 cut(s) 502, 701
BfuI GTATCC 1 cut(s) 1161
BglII AGATCT 1 cut(s) 1210
BisI GCNGC 6 cut(s) 132, 258, 261, 545, 666, 669
BlpI GCTNAGC 2 cut(s) 15, 777
BlsI GCNGC 6 cut(s) 133, 259, 262, 546, 667, 670
Bme1390I CCNGG 3 cut(s) 438, 927, 1014
Bme18I GGWCC 2 cut(s) 799, 1175
BmeT110I CYCGRG 1 cut(s) 25
BmgT120I GGNCC 2 cut(s) 799, 1175
BmiI GGNNCC 2 cut(s) 835, 1005
BmrFI CCNGG 3 cut(s) 438, 927, 1014
BmsI GCATC 2 cut(s) 184, 319
BoxI GACNNNNGTC 1 cut(s) 125
BpiI GAAGAC 1 cut(s) 617
BplI GAGNNNNNCTC 2 cut(s) 969, 1001
BpmI CTGGAG 1 cut(s) 1022
Bpu10I CCTNAGC 4 cut(s) 555, 576, 743, 1056
Bpu1102I GCTNAGC 2 cut(s) 15, 777
Bpu14I TTCGAA 2 cut(s) 80, 189
BpuEI CTTGAG 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 132, 802, 1104
Bsc4I CCNNNNNNNGG 4 cut(s) 227, 1013, 1142, 1202
Bse3DI GCAATG 1 cut(s) 147
BseBI CCWGG 3 cut(s) 438, 927, 1014
BseDI CCNNGG 3 cut(s) 132, 802, 1104
BseGI GGATG 1 cut(s) 565
BseLI CCNNNNNNNGG 4 cut(s) 227, 1013, 1142, 1202
BseMI GCAATG 1 cut(s) 147
BseRI GAGGAG 2 cut(s) 85, 1073
BseSI GKGCMC 1 cut(s) 642
BseXI GCAGC 5 cut(s) 244, 247, 556, 677, 680
BsgI GTGCAG 1 cut(s) 1134
Bsh1236I CGCG 1 cut(s) 134
Bsh1285I CGRYCG 2 cut(s) 964, 1221
BshNI GGYRCC 1 cut(s) 833
BsiEI CGRYCG 2 cut(s) 964, 1221
BsiHKCI CYCGRG 1 cut(s) 25
BslI CCNNNNNNNGG 4 cut(s) 227, 1013, 1142, 1202
BsmAI GTCTC 2 cut(s) 904, 989
BsoBI CYCGRG 1 cut(s) 25
Bsp119I TTCGAA 2 cut(s) 80, 189
Bsp1286I GDGCHC 1 cut(s) 642
Bsp143I GATC 3 cut(s) 791, 1184, 1210
Bsp1720I GCTNAGC 2 cut(s) 15, 777
Bsp19I CCATGG 1 cut(s) 1104
BspACI CCGC 3 cut(s) 132, 134, 150
BspFNI CGCG 1 cut(s) 134
BspHI TCATGA 1 cut(s) 889
BspLI GGNNCC 2 cut(s) 835, 1005
BspMAI CTGCAG 1 cut(s) 1240
BspPI GGATC 2 cut(s) 799, 1192
BspQI GCTCTTC 1 cut(s) 669
BspT104I TTCGAA 2 cut(s) 80, 189
BspT107I GGYRCC 1 cut(s) 833
BspTI CTTAAG 2 cut(s) 502, 701
BsrDI GCAATG 1 cut(s) 147
BssECI CCNNGG 3 cut(s) 132, 802, 1104
BssMI GATC 3 cut(s) 791, 1184, 1210
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 1110
BssT1I CCWWGG 1 cut(s) 1104
Bst2BI CACGAG 1 cut(s) 1110
Bst2UI CCWGG 3 cut(s) 438, 927, 1014
Bst4CI ACNGT 8 cut(s) 244, 316, 488, 752, 896, 916, 965, 1219
Bst6I CTCTTC 4 cut(s) 55, 444, 669, 970
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 2 cut(s) 502, 701
BstAPI GCANNNNNTGC 1 cut(s) 338
BstBI TTCGAA 2 cut(s) 80, 189
BstC8I GCNNGC 2 cut(s) 542, 1095
BstDSI CCRYGG 2 cut(s) 132, 1104
BstENI CCTNNNNNAGG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 565
BstFNI CGCG 1 cut(s) 134
BstHHI GCGC 1 cut(s) 1093
BstKTI GATC 3 cut(s) 794, 1187, 1213
BstMAI GTCTC 2 cut(s) 904, 989
BstMBI GATC 3 cut(s) 791, 1184, 1210
BstMCI CGRYCG 2 cut(s) 964, 1221
BstMWI GCNNNNNNNGC 5 cut(s) 11, 137, 172, 338, 646
BstNI CCWGG 3 cut(s) 438, 927, 1014
BstNSI RCATGY 2 cut(s) 416, 1123
BstPAI GACNNNNGTC 1 cut(s) 125
BstSCI CCNGG 3 cut(s) 436, 925, 1012
BstSFI CTRYAG 2 cut(s) 759, 1236
BstSLI GKGCMC 1 cut(s) 642
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 5 cut(s) 244, 247, 556, 677, 680
BstV2I GAAGAC 1 cut(s) 617
BstX2I RGATCY 3 cut(s) 791, 1184, 1210
BstYI RGATCY 3 cut(s) 791, 1184, 1210
BsuI GTATCC 1 cut(s) 1161
BtgI CCRYGG 2 cut(s) 132, 1104
BtsCI GGATG 1 cut(s) 565
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 2 cut(s) 542, 1095
CaiI CAGNNNCTG 1 cut(s) 671
CciI TCATGA 1 cut(s) 889
CfoI GCGC 1 cut(s) 1093
Cfr13I GGNCC 2 cut(s) 799, 1175
Cfr42I CCGCGG 1 cut(s) 135
CseI GACGC 2 cut(s) 155, 1159
CsiI ACCWGGT 2 cut(s) 436, 1012
Csp6I GTAC 1 cut(s) 434
CviAII CATG 5 cut(s) 413, 872, 890, 1105, 1120
CviQI GTAC 1 cut(s) 434
DpnI GATC 3 cut(s) 793, 1186, 1212
DpnII GATC 3 cut(s) 791, 1184, 1210
DraIII CACNNNGTG 1 cut(s) 1016
Eam1104I CTCTTC 4 cut(s) 55, 444, 669, 970
EarI CTCTTC 4 cut(s) 55, 444, 669, 970
Eco130I CCWWGG 1 cut(s) 1104
Eco32I GATATC 2 cut(s) 654, 907
Eco47I GGWCC 2 cut(s) 799, 1175
Eco57I CTGAAG 4 cut(s) 197, 533, 693, 905
Eco88I CYCGRG 1 cut(s) 25
EcoNI CCTNNNNNAGG 1 cut(s) 225
EcoRII CCWGG 3 cut(s) 436, 925, 1012
EcoRV GATATC 2 cut(s) 654, 907
EcoT14I CCWWGG 1 cut(s) 1104
ErhI CCWWGG 1 cut(s) 1104
FaeI CATG 5 cut(s) 416, 875, 893, 1108, 1123
FalI AAGNNNNNCTT 4 cut(s) 666, 698, 765, 797
FatI CATG 5 cut(s) 412, 871, 889, 1104, 1119
FblI GTMKAC 2 cut(s) 246, 1221
Fnu4HI GCNGC 6 cut(s) 132, 258, 261, 545, 666, 669
FokI GGATG 1 cut(s) 572
Fsp4HI GCNGC 6 cut(s) 132, 258, 261, 545, 666, 669
FspBI CTAG 4 cut(s) 60, 147, 300, 1172
FspI TGCGCA 1 cut(s) 1092
GlaI GCGC 1 cut(s) 1092
GluI GCNGC 6 cut(s) 132, 258, 261, 545, 666, 669
GsuI CTGGAG 1 cut(s) 1022
HgaI GACGC 2 cut(s) 155, 1159
HhaI GCGC 1 cut(s) 1093
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 416, 875, 893, 1108, 1123
Hin6I GCGC 1 cut(s) 1091
HinP1I GCGC 1 cut(s) 1091
HincII GTYRAC 3 cut(s) 247, 349, 1222
HindII GTYRAC 3 cut(s) 247, 349, 1222
HindIII AAGCTT 1 cut(s) 734
HinfI GANTC 3 cut(s) 855, 955, 1024
HphI GGTGA 4 cut(s) 232, 479, 941, 1028
Hpy166II GTNNAC 4 cut(s) 247, 349, 1145, 1222
Hpy188III TCNNGA 7 cut(s) 27, 170, 322, 683, 890, 959, 1048
Hpy8I GTNNAC 4 cut(s) 247, 349, 1145, 1222
Hpy99I CGWCG 3 cut(s) 248, 251, 1226
HpyAV CCTTC 6 cut(s) 221, 614, 847, 934, 1045, 1242
HpyCH4III ACNGT 8 cut(s) 244, 316, 488, 752, 896, 916, 965, 1219
HpyCH4IV ACGT 1 cut(s) 535
HpyCH4V TGCA 7 cut(s) 140, 332, 341, 359, 540, 1115, 1238
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 137, 172, 338, 646
HpySE526I ACGT 1 cut(s) 535
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 416, 875, 893, 1108, 1123
HspAI GCGC 1 cut(s) 1091
KspI CCGCGG 1 cut(s) 135
Kzo9I GATC 3 cut(s) 791, 1184, 1210
LguI GCTCTTC 1 cut(s) 669
LmnI GCTCC 2 cut(s) 163, 1003
Lsp1109I GCAGC 5 cut(s) 244, 247, 556, 677, 680
LweI GCATC 2 cut(s) 184, 319
MabI ACCWGGT 2 cut(s) 436, 1012
MaeI CTAG 4 cut(s) 60, 147, 300, 1172
MaeII ACGT 1 cut(s) 535
MaeIII GTNAC 5 cut(s) 929, 956, 965, 1028, 1191
MalI GATC 3 cut(s) 793, 1186, 1212
MboI GATC 3 cut(s) 791, 1184, 1210
MflI RGATCY 3 cut(s) 791, 1184, 1210
MhlI GDGCHC 1 cut(s) 642
MluCI AATT 5 cut(s) 20, 283, 405, 786, 1086
MlyI GAGTC 1 cut(s) 964
MmeI TCCRAC 2 cut(s) 143, 1156
MroXI GAANNNNTTC 3 cut(s) 185, 624, 678
MseI TTAA 3 cut(s) 408, 503, 702
MslI CAYNNNNRTG 2 cut(s) 894, 963
MspA1I CMGCKG 2 cut(s) 134, 671
MspCI CTTAAG 2 cut(s) 502, 701
MspR9I CCNGG 3 cut(s) 438, 927, 1014
MvaI CCWGG 3 cut(s) 438, 927, 1014
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 5 cut(s) 11, 137, 172, 338, 646
NcoI CCATGG 1 cut(s) 1104
NdeII GATC 3 cut(s) 791, 1184, 1210
NlaIII CATG 5 cut(s) 416, 875, 893, 1108, 1123
NlaIV GGNNCC 2 cut(s) 835, 1005
NmuCI GTSAC 3 cut(s) 929, 956, 965
NsbI TGCGCA 1 cut(s) 1092
NspI RCATGY 2 cut(s) 416, 1123
NspV TTCGAA 2 cut(s) 80, 189
OliI CACNNNNGTG 1 cut(s) 963
PagI TCATGA 1 cut(s) 889
PciSI GCTCTTC 1 cut(s) 669
PdmI GAANNNNTTC 3 cut(s) 185, 624, 678
PfeI GAWTC 2 cut(s) 855, 1024
PflFI GACNNNGTC 1 cut(s) 896
PflMI CCANNNNNTGG 2 cut(s) 1013, 1202
PkrI GCNGC 6 cut(s) 133, 259, 262, 546, 667, 670
PleI GAGTC 1 cut(s) 963
PpsI GAGTC 1 cut(s) 963
PshAI GACNNNNGTC 1 cut(s) 125
Psp1406I AACGTT 1 cut(s) 535
Psp6I CCWGG 3 cut(s) 436, 925, 1012
PspGI CCWGG 3 cut(s) 436, 925, 1012
PspN4I GGNNCC 2 cut(s) 835, 1005
PspPI GGNCC 2 cut(s) 799, 1175
PstI CTGCAG 1 cut(s) 1240
PstNI CAGNNNCTG 1 cut(s) 671
PsuI RGATCY 3 cut(s) 791, 1184, 1210
PsyI GACNNNGTC 1 cut(s) 896
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
RseI CAYNNNNRTG 2 cut(s) 894, 963
SacII CCGCGG 1 cut(s) 135
SalI GTCGAC 2 cut(s) 245, 1220
SapI GCTCTTC 1 cut(s) 669
SaqAI TTAA 3 cut(s) 408, 503, 702
SatI GCNGC 6 cut(s) 132, 258, 261, 545, 666, 669
Sau3AI GATC 3 cut(s) 791, 1184, 1210
Sau96I GGNCC 2 cut(s) 799, 1175
SchI GAGTC 1 cut(s) 964
ScrFI CCNGG 3 cut(s) 438, 927, 1014
SduI GDGCHC 1 cut(s) 642
SexAI ACCWGGT 2 cut(s) 436, 1012
SfaNI GCATC 2 cut(s) 184, 319
SfcI CTRYAG 2 cut(s) 759, 1236
Sfr303I CCGCGG 1 cut(s) 135
SfuI TTCGAA 2 cut(s) 80, 189
SgrBI CCGCGG 1 cut(s) 135
SgrDI CGTCGACG 1 cut(s) 245
SinI GGWCC 2 cut(s) 799, 1175
SmiMI CAYNNNNRTG 2 cut(s) 894, 963
SmlI CTYRAG 3 cut(s) 170, 502, 701
SmoI CTYRAG 3 cut(s) 170, 502, 701
Sse9I AATT 5 cut(s) 20, 283, 405, 786, 1086
SsiI CCGC 3 cut(s) 132, 134, 150
SspI AATATT 1 cut(s) 511
SspMI CTAG 4 cut(s) 60, 147, 300, 1172
StyD4I CCNGG 3 cut(s) 436, 925, 1012
StyI CCWWGG 1 cut(s) 1104
TaaI ACNGT 8 cut(s) 244, 316, 488, 752, 896, 916, 965, 1219
TaiI ACGT 1 cut(s) 538
TaqI TCGA 7 cut(s) 68, 80, 189, 246, 659, 1047, 1221
TasI AATT 5 cut(s) 20, 283, 405, 786, 1086
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 2 cut(s) 855, 1024
Tru1I TTAA 3 cut(s) 408, 503, 702
Tru9I TTAA 3 cut(s) 408, 503, 702
TscAI CASTG 1 cut(s) 321
TseFI GTSAC 3 cut(s) 929, 956, 965
TseI GCWGC 5 cut(s) 257, 260, 544, 665, 668
Tsp45I GTSAC 3 cut(s) 929, 956, 965
TspDTI ATGAA 5 cut(s) 216, 389, 489, 829, 860
TspRI CASTG 1 cut(s) 321
Tth111I GACNNNGTC 1 cut(s) 896
Van91I CCANNNNNTGG 2 cut(s) 1013, 1202
Vha464I CTTAAG 2 cut(s) 502, 701
VpaK11BI GGWCC 2 cut(s) 799, 1175
XagI CCTNNNNNAGG 1 cut(s) 225
XceI RCATGY 2 cut(s) 416, 1123
XcmI CCANNNNNNNNNTGG 3 cut(s) 779, 997, 1139
XmiI GTMKAC 2 cut(s) 246, 1221
XmnI GAANNNNTTC 3 cut(s) 185, 624, 678
XspI CTAG 4 cut(s) 60, 147, 300, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.