Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013214

Physical Location & Seq

Genomic Coordinates Forward (+)

8878789 .. 8881902

Gene Structure 3114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G111400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGCGTCTTTGGCTCAACAATTCACAGGCTTGAGATGCCCGCCACTCTCAACCTCGCGGCTCTCAAAGCCATCAGTCTTTCCAAAGCAAAACAAAATGGCGGGTTTGCTTCCCGTAGTCTCAGCTGTGGCCATTTCCAACGCACAGACCAAAGAGCGCCTCAAGCTCAAAGAACTCTTCGAAGATGCCCACGAACGGTGTCGTACTGCCCCCATGGAAGGCGTCTCTTTCAATCTCGACTCTTTTTACTCCGCTCTGGAGAAGTATGACTTCAATTCTGAGATTGGAACTAAGGTAAAGGGTACAGTTTTCAATATAGATAACTATGGGGCATTAGTCGACATTACTGCCAAGTCTTCGGCGTACTTGCCTGTGCAAGAGGCATGCATTCACAAAATAAAAAGTGTAGAAGAAGTAGGCATAGTTCCTGGAGTGAGAGAGGAGTTTGTGATTATTGGTGAAAATGAAGCTGACGATAGCTTGATTTTGAGTTTAAAGTCTATCCAGTATGACCTTGCATGGGAAAGATGTAGACAGCTCCAAGCTGAGGATGTTGTTGTCAAGGGTAAGGTTGTTGGTGCGAACAAAGGTGGAGTGGTGGCTGTGGTGGAAGGCCTTAGAGGTTTTGTTCCTTTCTCACAGATATCAACAAAATCAACGGCAGAAGAGCTTCTTGATAAAGAGATTCCTCTGAAGTTTGTTGAGGTTGATGAAGAACAGTCCAGGCTTGTCCTCAGCAACCGTAAGGCCATGGCAGACAACCAAGCCCAGCTTGGAATTGGATCAGTTGTCCTGGGAACTGTTCAAAGCCTGAAGCCATATGGTGCCTTTATTGACATTGGTGGAATCAACGGCCTACTTCATGTTAGTCAGATCAGTCATGACCGAGTCTCTGATATTGCAACAGTTCTCCAACCTGGTGACACTCTCAAGGTCATGATATTGAGCCATGACCGTGAGAGAGGCCGTGTAAGTCTTTCTACCAAGAAGTTAGAACCTACTCCTGGAGATATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCGCAGACATTCAGGCAGAGAATTGCTCAAGCAGAAGCTATGGCTCGTGCAGACATGCTCCGTTTCCAGCCTGAGAGTGGATTAACCCTCAGCTCTGATGGGATCTTGGGTCCGCTTACTTCAGACTTGCCAGTAGAGGGTTTAGATTTGAGCGATGTTCCCCCGGCTGAAGTGACCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Protein Analysis

413

Amino Acids

44.91

Weight (kDa)

5.27

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G30510
fragaria_vesca	FvH4_4g20780 FvH4_4g20780
malus_domestica	MD13G1147900.v1.1 MD16G1147700.v1.1
prunus_persica	Prupe.1G111400_v2.0.a1
pyrus_communis	pycom16g12610 pycom16g12620
rosa_chinensis	RchiOBHm_Chr4g0426221
rosa_laevigata	RLG00000007309
rosa_multiflora	Rmu_sc0000730.1_g000026
rosa_roxburghii	Rroxscaffold_5G00368240
rosa_rugosa	Rorug04G0209700
rosa_samantha	Rh4AG266600 Rh4BG272600 Rh4CG285800 Rh4DG268900
rosa_wichuraiana	Rw4G023050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	824
AccBSI	CCGCTC	1 cut(s)	254
AccI	GTMKAC	2 cut(s)	339, 532
AccII	CGCG	1 cut(s)	58
AciI	CCGC	6 cut(s)	41, 58, 101, 252, 1046, 1169
AclWI	GGATC	2 cut(s)	790, 1166
AcoI	YGGCCR	1 cut(s)	129
AcuI	CTGAAG	3 cut(s)	713, 833, 1161
AcyI	GRCGYC	2 cut(s)	5, 222
AfaI	GTAC	3 cut(s)	205, 304, 365
AfiI	CCNNNNNNNGG	7 cut(s)	195, 218, 520, 547, 1004, 1133, 1193
AgsI	TTSAA	4 cut(s)	232, 274, 313, 806
AjnI	CCWGG	5 cut(s)	427, 722, 792, 916, 1003
Alw26I	GTCTC	3 cut(s)	124, 229, 895
AlwI	GGATC	2 cut(s)	790, 1166
AoxI	GGCC	5 cut(s)	129, 613, 747, 853, 964
Asp700I	GAANNNNTTC	1 cut(s)	669
AspLEI	GCGC	2 cut(s)	159, 1060
AspS9I	GGNCC	1 cut(s)	1166
AsuC2I	CCSGG	1 cut(s)	1220
AsuHPI	GGTGA	2 cut(s)	470, 932
AsuII	TTCGAA	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	1166
BalI	TGGCCA	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	824
BauI	CACGAG	1 cut(s)	1101
BbsI	GAAGAC	1 cut(s)	348
BbvCI	CCTCAGC	3 cut(s)	546, 734, 1145
BccI	CCATC	3 cut(s)	79, 1048, 1148
BceAI	ACGGC	3 cut(s)	675, 868, 951
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciT130I	CCWGG	5 cut(s)	429, 724, 794, 918, 1005
BcnI	CCSGG	1 cut(s)	1220
BcoDI	GTCTC	3 cut(s)	124, 229, 895
BfoI	RGCGCY	1 cut(s)	160
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bme1390I	CCNGG	6 cut(s)	429, 724, 794, 918, 1005, 1220
Bme18I	GGWCC	1 cut(s)	1166
BmgT120I	GGNCC	1 cut(s)	1166
BmiI	GGNNCC	2 cut(s)	826, 1167
BmrFI	CCNGG	6 cut(s)	429, 724, 794, 918, 1005, 1220
BmsI	GCATC	2 cut(s)	26, 175
BpiI	GAAGAC	1 cut(s)	348
BplI	GAGNNNNNCTC	2 cut(s)	1066, 1098
BpmI	CTGGAG	3 cut(s)	278, 450, 1026
Bpu10I	CCTNAGC	3 cut(s)	546, 734, 1145
Bpu14I	TTCGAA	1 cut(s)	180
BpuEI	CTTGAG	4 cut(s)	52, 146, 914, 1068
BpuMI	CCSGG	1 cut(s)	1220
BsaHI	GRCGYC	2 cut(s)	5, 222
BsaJI	CCNNGG	4 cut(s)	213, 750, 793, 1218
Bsc4I	CCNNNNNNNGG	7 cut(s)	195, 218, 520, 547, 1004, 1133, 1193
Bse1I	ACTGG	2 cut(s)	505, 1187
BseBI	CCWGG	5 cut(s)	429, 724, 794, 918, 1005
BseDI	CCNNGG	4 cut(s)	213, 750, 793, 1218
BseGI	GGATG	1 cut(s)	556
BseLI	CCNNNNNNNGG	7 cut(s)	195, 218, 520, 547, 1004, 1133, 1193
BseMII	CTCAG	6 cut(s)	135, 270, 537, 748, 1119, 1159
BseNI	ACTGG	2 cut(s)	505, 1187
BseRI	GAGGAG	2 cut(s)	455, 1064
BseYI	CCCAGC	1 cut(s)	768
BsgI	GTGCAG	1 cut(s)	1125
Bsh1236I	CGCG	1 cut(s)	58
BshFI	GGCC	5 cut(s)	131, 615, 749, 855, 966
BshNI	GGYRCC	1 cut(s)	824
BsiSI	CCGG	1 cut(s)	1220
BslI	CCNNNNNNNGG	7 cut(s)	195, 218, 520, 547, 1004, 1133, 1193
BsmAI	GTCTC	3 cut(s)	124, 229, 895
BsmBI	CGTCTC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	5 cut(s)	131, 615, 749, 855, 966
Bsp119I	TTCGAA	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	782, 873, 1158
Bsp19I	CCATGG	2 cut(s)	213, 750
BspACI	CCGC	6 cut(s)	41, 58, 101, 252, 1046, 1169
BspANI	GGCC	5 cut(s)	131, 615, 749, 855, 966
BspCNI	CTCAG	6 cut(s)	134, 271, 538, 747, 1120, 1158
BspFNI	CGCG	1 cut(s)	58
BspHI	TCATGA	2 cut(s)	880, 936
BspLI	GGNNCC	2 cut(s)	826, 1167
BspPI	GGATC	2 cut(s)	790, 1166
BspQI	GCTCTTC	1 cut(s)	660
BspT104I	TTCGAA	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	824
BsrBI	CCGCTC	1 cut(s)	254
BsrI	ACTGG	2 cut(s)	505, 1187
BssECI	CCNNGG	4 cut(s)	213, 750, 793, 1218
BssMI	GATC	3 cut(s)	782, 873, 1158
BssNI	GRCGYC	2 cut(s)	5, 222
BssSI	CACGAG	1 cut(s)	1101
BssT1I	CCWWGG	2 cut(s)	213, 750
Bst2BI	CACGAG	1 cut(s)	1101
Bst2UI	CCWGG	5 cut(s)	429, 724, 794, 918, 1005
Bst4CI	ACNGT	7 cut(s)	198, 307, 720, 743, 802, 907, 956
Bst6I	CTCTTC	2 cut(s)	182, 660
BstACI	GRCGYC	2 cut(s)	5, 222
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	41, 385
BstDEI	CTNAG	8 cut(s)	121, 279, 291, 546, 617, 734, 1128, 1145
BstDSI	CCRYGG	2 cut(s)	213, 750
BstF5I	GGATG	1 cut(s)	556
BstFNI	CGCG	1 cut(s)	58
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	2 cut(s)	159, 1060
BstKTI	GATC	3 cut(s)	785, 876, 1161
BstMAI	GTCTC	3 cut(s)	124, 229, 895
BstMBI	GATC	3 cut(s)	782, 873, 1158
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 36, 67, 163
BstNI	CCWGG	5 cut(s)	429, 724, 794, 918, 1005
BstNSI	RCATGY	2 cut(s)	387, 1114
BstSCI	CCNGG	6 cut(s)	427, 722, 792, 916, 1003, 1218
BstUI	CGCG	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	1 cut(s)	1158
BstYI	RGATCY	1 cut(s)	1158
BsuRI	GGCC	5 cut(s)	131, 615, 749, 855, 966
BtgI	CCRYGG	2 cut(s)	213, 750
BtgZI	GCGATG	1 cut(s)	1224
BtsCI	GGATG	1 cut(s)	556
Cac8I	GCNNGC	2 cut(s)	41, 385
CciI	TCATGA	2 cut(s)	880, 936
CfoI	GCGC	2 cut(s)	159, 1060
Cfr13I	GGNCC	1 cut(s)	1166
CseI	GACGC	1 cut(s)	211
CsiI	ACCWGGT	1 cut(s)	916
Csp6I	GTAC	3 cut(s)	204, 303, 364
CviAII	CATG	9 cut(s)	214, 384, 519, 751, 863, 881, 937, 950, 1111
CviQI	GTAC	3 cut(s)	204, 303, 364
DdeI	CTNAG	8 cut(s)	121, 279, 291, 546, 617, 734, 1128, 1145
DpnI	GATC	3 cut(s)	784, 875, 1160
DpnII	GATC	3 cut(s)	782, 873, 1158
DraI	TTTAAA	1 cut(s)	495
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	2 cut(s)	182, 660
EarI	CTCTTC	2 cut(s)	182, 660
EciI	GGCGGA	1 cut(s)	1061
Eco130I	CCWWGG	2 cut(s)	213, 750
Eco147I	AGGCCT	1 cut(s)	615
Eco32I	GATATC	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	1166
Eco57I	CTGAAG	3 cut(s)	713, 833, 1161
EcoRII	CCWGG	5 cut(s)	427, 722, 792, 916, 1003
EcoRV	GATATC	1 cut(s)	645
EcoT14I	CCWWGG	2 cut(s)	213, 750
EcoT22I	ATGCAT	1 cut(s)	389
ErhI	CCWWGG	2 cut(s)	213, 750
Esp3I	CGTCTC	1 cut(s)	229
FaeI	CATG	9 cut(s)	217, 387, 522, 754, 866, 884, 940, 953, 1114
FalI	AAGNNNNNCTT	8 cut(s)	254, 286, 657, 689, 756, 788, 1019, 1051
FatI	CATG	9 cut(s)	213, 383, 518, 750, 862, 880, 936, 949, 1110
FauI	CCCGC	2 cut(s)	48, 94
FauNDI	CATATG	1 cut(s)	820
FblI	GTMKAC	2 cut(s)	339, 532
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	1 cut(s)	563
Fsp4HI	GCNGC	1 cut(s)	59
GlaI	GCGC	2 cut(s)	158, 1059
GluI	GCNGC	1 cut(s)	59
GsaI	CCCAGC	1 cut(s)	772
GsuI	CTGGAG	3 cut(s)	278, 450, 1026
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	5 cut(s)	131, 615, 749, 855, 966
HapII	CCGG	1 cut(s)	1220
HgaI	GACGC	1 cut(s)	211
HhaI	GCGC	2 cut(s)	159, 1060
Hin1I	GRCGYC	2 cut(s)	5, 222
Hin1II	CATG	9 cut(s)	217, 387, 522, 754, 866, 884, 940, 953, 1114
Hin6I	GCGC	2 cut(s)	157, 1058
HinP1I	GCGC	2 cut(s)	157, 1058
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	1028
HinfI	GANTC	5 cut(s)	239, 685, 846, 888, 1015
HpaII	CCGG	1 cut(s)	1220
HphI	GGTGA	2 cut(s)	470, 932
Hpy166II	GTNNAC	2 cut(s)	340, 533
Hpy188I	TCNGA	6 cut(s)	280, 693, 873, 895, 1153, 1180
Hpy188III	TCNNGA	5 cut(s)	236, 257, 674, 881, 937
Hpy8I	GTNNAC	2 cut(s)	340, 533
HpyAV	CCTTC	3 cut(s)	212, 605, 1036
HpyCH4III	ACNGT	7 cut(s)	198, 307, 720, 743, 802, 907, 956
HpyCH4V	TGCA	5 cut(s)	376, 387, 518, 902, 1106
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 36, 67, 163
HpyF3I	CTNAG	8 cut(s)	121, 279, 291, 546, 617, 734, 1128, 1145
Hsp92I	GRCGYC	2 cut(s)	5, 222
Hsp92II	CATG	9 cut(s)	217, 387, 522, 754, 866, 884, 940, 953, 1114
HspAI	GCGC	2 cut(s)	157, 1058
Kzo9I	GATC	3 cut(s)	782, 873, 1158
LguI	GCTCTTC	1 cut(s)	660
LmnI	GCTCC	2 cut(s)	543, 1119
LweI	GCATC	2 cut(s)	26, 175
MabI	ACCWGGT	1 cut(s)	916
MaeIII	GTNAC	2 cut(s)	920, 1228
MalI	GATC	3 cut(s)	784, 875, 1160
MbiI	CCGCTC	1 cut(s)	254
MboI	GATC	3 cut(s)	782, 873, 1158
MboII	GAAGA	6 cut(s)	169, 194, 348, 422, 677, 725
MflI	RGATCY	1 cut(s)	1158
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	4 cut(s)	20, 274, 777, 1077
MluNI	TGGCCA	1 cut(s)	131
MlyI	GAGTC	2 cut(s)	233, 897
MmeI	TCCRAC	2 cut(s)	162, 937
Mox20I	TGGCCA	1 cut(s)	131
Mph1103I	ATGCAT	1 cut(s)	389
MroXI	GAANNNNTTC	1 cut(s)	669
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	2 cut(s)	494, 1139
MslI	CAYNNNNRTG	1 cut(s)	954
Msp20I	TGGCCA	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	1 cut(s)	1220
MspR9I	CCNGG	6 cut(s)	429, 724, 794, 918, 1005, 1220
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	5 cut(s)	429, 724, 794, 918, 1005
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	4 cut(s)	11, 36, 67, 163
NciI	CCSGG	1 cut(s)	1220
NcoI	CCATGG	2 cut(s)	213, 750
NdeI	CATATG	1 cut(s)	820
NdeII	GATC	3 cut(s)	782, 873, 1158
NlaIII	CATG	9 cut(s)	217, 387, 522, 754, 866, 884, 940, 953, 1114
NlaIV	GGNNCC	2 cut(s)	826, 1167
NmuCI	GTSAC	2 cut(s)	920, 1228
NsiI	ATGCAT	1 cut(s)	389
NspI	RCATGY	2 cut(s)	387, 1114
NspV	TTCGAA	1 cut(s)	180
PaeI	GCATGC	1 cut(s)	387
PagI	TCATGA	2 cut(s)	880, 936
PceI	AGGCCT	1 cut(s)	615
PciSI	GCTCTTC	1 cut(s)	660
PctI	GAATGC	1 cut(s)	387
PdmI	GAANNNNTTC	1 cut(s)	669
PfeI	GAWTC	3 cut(s)	685, 846, 1015
PflFI	GACNNNGTC	1 cut(s)	887
PfoI	TCCNGGA	2 cut(s)	427, 1003
PkrI	GCNGC	1 cut(s)	60
PleI	GAGTC	2 cut(s)	233, 896
PpsI	GAGTC	2 cut(s)	233, 896
Psp6I	CCWGG	5 cut(s)	427, 722, 792, 916, 1003
PspFI	CCCAGC	1 cut(s)	768
PspGI	CCWGG	5 cut(s)	427, 722, 792, 916, 1003
PspN4I	GGNNCC	2 cut(s)	826, 1167
PspPI	GGNCC	1 cut(s)	1166
PsrI	GAACNNNNNNTAC	2 cut(s)	408, 440
PsuI	RGATCY	1 cut(s)	1158
PsyI	GACNNNGTC	1 cut(s)	887
PvuII	CAGCTG	1 cut(s)	125
RsaI	GTAC	3 cut(s)	205, 304, 365
RsaNI	GTAC	3 cut(s)	204, 303, 364
RseI	CAYNNNNRTG	1 cut(s)	954
SalI	GTCGAC	1 cut(s)	338
SapI	GCTCTTC	1 cut(s)	660
SaqAI	TTAA	2 cut(s)	494, 1139
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	3 cut(s)	782, 873, 1158
Sau96I	GGNCC	1 cut(s)	1166
SchI	GAGTC	2 cut(s)	233, 897
ScrFI	CCNGG	6 cut(s)	429, 724, 794, 918, 1005, 1220
SexAI	ACCWGGT	1 cut(s)	916
SfaNI	GCATC	2 cut(s)	26, 175
SfuI	TTCGAA	1 cut(s)	180
SinI	GGWCC	1 cut(s)	1166
SmiMI	CAYNNNNRTG	1 cut(s)	954
SmlI	CTYRAG	4 cut(s)	31, 161, 929, 1083
SmoI	CTYRAG	4 cut(s)	31, 161, 929, 1083
SphI	GCATGC	1 cut(s)	387
Sse9I	AATT	4 cut(s)	20, 274, 777, 1077
SseBI	AGGCCT	1 cut(s)	615
SsiI	CCGC	6 cut(s)	41, 58, 101, 252, 1046, 1169
StuI	AGGCCT	1 cut(s)	615
StyD4I	CCNGG	6 cut(s)	427, 722, 792, 916, 1003, 1218
StyI	CCWWGG	2 cut(s)	213, 750
TaaI	ACNGT	7 cut(s)	198, 307, 720, 743, 802, 907, 956
TaqI	TCGA	3 cut(s)	180, 237, 339
TaqII	GACCGA	1 cut(s)	900
TasI	AATT	4 cut(s)	20, 274, 777, 1077
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	3 cut(s)	685, 846, 1015
Tru1I	TTAA	2 cut(s)	494, 1139
Tru9I	TTAA	2 cut(s)	494, 1139
TseFI	GTSAC	2 cut(s)	920, 1228
Tsp45I	GTSAC	2 cut(s)	920, 1228
TspDTI	ATGAA	3 cut(s)	480, 726, 851
TspGWI	ACGGA	1 cut(s)	1106
Tth111I	GACNNNGTC	1 cut(s)	887
VpaK11BI	GGWCC	1 cut(s)	1166
XceI	RCATGY	2 cut(s)	387, 1114
XcmI	CCANNNNNNNNNTGG	3 cut(s)	770, 776, 1130
XmiI	GTMKAC	2 cut(s)	339, 532
XmnI	GAANNNNTTC	1 cut(s)	669
Zsp2I	ATGCAT	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.