Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0013214

Physical Location & Seq

Genomic Coordinates Reverse (-)

58273112 .. 58275814

Gene Structure 2703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG266600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGCGTCTTTGGCTCAGCAATTCACAGGGTTGAGATGCTCACCTCTCTCCACCTCGCGGCTCTCGAAGCCCTTCTCTCCCACGCAAACCAAGACCACTCTGCTCCCCATTGTCTCTGCTTCAGTCATCTCCAACGCTCAGACCAAAGAGCGCCTCAAGCTCAAGGAAATCTTCGAAGACGCACAGGAACGCTGCCGTACTGCCCCCATGGAAGGCGTCTCTTTCAATCTCGACTCTTTCTACTCCGCTCTTGAAAAGTACGACTTCAATTCCGAGATTGGAACCAAGGTGAAGGGTGTGATTTTCCATACAGATAACAAGGGGGCATTAGTCGACATTACTGCAAAGTCTTCGGCGCATTTGAAAGTGGAAGATGCATGTATGCATAAGATAAAGCATGTGGAAGAAGTAGGGTTAGTTCCTGGTGTGAAAGAGGAGTTTGTAATTATTGGCGAAAATGAGGATGATGATAGCTTGATCTTGAGCTTGAAGACTATCCAGTTTGAGCTTGCGTGGGAGAGGTGTAGACAGCTCCAAGCTGAGGATGTTGTTGTCAAGGGTAGGGTTGTTGGTGCAAACAAAGGTGGAGTGGTGGCTGTGGTGGAAGGTCTTCGAGGTTTTGTTCCTTTCTCGCAGTTATCAACAAAATCAACTGCGGAAGAGCTTATTGAGAAGGATATCCCTCTGAAGTTTGTGGAGGTTGATGAGGAACAATCTAGGCTTGTCCTCAGTAACCGCAAGGCCATGGCAGACAATCAAGCACAACTAGGAATTGGATCAGTTGTCCTTGGAACTGTGCAGAGCCTGAAGCCATATGGTGCATTTATTGACATTGGTGGAATCAATGGCCTTCTTCATGTTAGTCAGATCAGTCATGACCGAGTCTCTGATATTGCAACAGTTCTTCAACCTGGTGACACTCTCAAGGTCATGATATTGAGCCATGACCGTGAGAGAGGCCGTGTAAGTCTATCAACTAAAAAGTTAGAACCGACTCCTGGTGACATGATTCGGAATCCTACACTTGTTTTTGAGAAGGCAGAGGAGATGGCTCAGACATTCAGGCAGAGAATTGCTCAAGCAGAGGCTATGGCTCGTGCAGACATGCTTCGTTTCCAGCCAGAGAGTGGATTAACCCTAAGTTCTGATGGGATCTTAGGCCCAGTTACTTCAGACCTGCCAGTAGAGGGTTTAGATTTGAGTGATGTGCCTTCAACTGTAGTGACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Protein Analysis

410

Amino Acids

44.78

Weight (kDa)

5.33

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S1	PF00575	181 - 244	9.2e-08	S1 RNA binding domain
S1	PF00575	258 - 327	7.3e-18	S1 RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G30510
fragaria_vesca	FvH4_4g20780 FvH4_4g20780
malus_domestica	MD13G1147900.v1.1 MD16G1147700.v1.1
prunus_persica	Prupe.1G111400_v2.0.a1
pyrus_communis	pycom16g12610 pycom16g12620
rosa_chinensis	RchiOBHm_Chr4g0426221
rosa_laevigata	RLG00000007309
rosa_multiflora	Rmu_sc0000730.1_g000026
rosa_roxburghii	Rroxscaffold_5G00368240
rosa_rugosa	Rorug04G0209700
rosa_samantha	Rh4AG266600 Rh4BG272600 Rh4CG285800 Rh4DG268900
rosa_wichuraiana	Rw4G023050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1185
AccB7I	CCANNNNNTGG	1 cut(s)	1127
AccBSI	CCGCTC	1 cut(s)	248
AccI	GTMKAC	2 cut(s)	333, 526
AccII	CGCG	1 cut(s)	58
AciI	CCGC	4 cut(s)	58, 246, 656, 736
AclWI	GGATC	2 cut(s)	784, 1160
AcuI	CTGAAG	4 cut(s)	105, 707, 827, 1155
AcyI	GRCGYC	2 cut(s)	5, 216
AfaI	GTAC	2 cut(s)	199, 260
AfiI	CCNNNNNNNGG	6 cut(s)	57, 212, 541, 998, 1127, 1187
AgsI	TTSAA	7 cut(s)	226, 254, 268, 364, 490, 908, 1215
AjnI	CCWGG	3 cut(s)	421, 910, 997
AluBI	AGCT	7 cut(s)	160, 474, 486, 508, 532, 539, 664
AluI	AGCT	7 cut(s)	160, 474, 486, 508, 532, 539, 664
Alw26I	GTCTC	3 cut(s)	118, 223, 889
AlwI	GGATC	2 cut(s)	784, 1160
AlwNI	CAGNNNCTG	1 cut(s)	805
AoxI	GGCC	4 cut(s)	741, 847, 958, 1159
ApeKI	GCWGC	1 cut(s)	192
Asp700I	GAANNNNTTC	2 cut(s)	71, 609
AspLEI	GCGC	2 cut(s)	153, 358
AspS9I	GGNCC	1 cut(s)	1160
AsuHPI	GGTGA	4 cut(s)	33, 301, 926, 1013
AsuII	TTCGAA	1 cut(s)	174
BauI	CACGAG	1 cut(s)	1095
BbsI	GAAGAC	4 cut(s)	183, 342, 497, 602
BbvCI	CCTCAGC	1 cut(s)	540
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	2 cut(s)	1042, 1142
BceAI	ACGGC	2 cut(s)	180, 945
BcgI	CGANNNNNNTGC	4 cut(s)	323, 333, 357, 367
BciT130I	CCWGG	3 cut(s)	423, 912, 999
BcoDI	GTCTC	3 cut(s)	118, 223, 889
BfaI	CTAG	2 cut(s)	717, 767
BfmI	CTRYAG	1 cut(s)	1218
BfoI	RGCGCY	1 cut(s)	154
BfuAI	ACCTGC	1 cut(s)	1185
BisI	GCNGC	2 cut(s)	59, 193
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	2 cut(s)	60, 194
Bme1390I	CCNGG	3 cut(s)	423, 912, 999
BmgT120I	GGNCC	1 cut(s)	1160
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	3 cut(s)	423, 912, 999
BmrI	ACTGGG	1 cut(s)	1157
BmsI	GCATC	2 cut(s)	26, 364
BmuI	ACTGGG	1 cut(s)	1157
BpiI	GAAGAC	4 cut(s)	183, 342, 497, 602
BplI	GAGNNNNNCTC	2 cut(s)	1060, 1092
Bpu10I	CCTNAGC	1 cut(s)	540
Bpu1102I	GCTNAGC	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	174
BpuEI	CTTGAG	5 cut(s)	140, 146, 502, 908, 1062
BsaHI	GRCGYC	2 cut(s)	5, 216
BsaJI	CCNNGG	4 cut(s)	207, 285, 744, 787
Bsc4I	CCNNNNNNNGG	6 cut(s)	57, 212, 541, 998, 1127, 1187
Bse1I	ACTGG	3 cut(s)	499, 1163, 1181
BseBI	CCWGG	3 cut(s)	423, 912, 999
BseDI	CCNNGG	4 cut(s)	207, 285, 744, 787
BseGI	GGATG	2 cut(s)	469, 550
BseLI	CCNNNNNNNGG	6 cut(s)	57, 212, 541, 998, 1127, 1187
BseMII	CTCAG	5 cut(s)	29, 152, 531, 742, 1067
BseNI	ACTGG	3 cut(s)	499, 1163, 1181
BseRI	GAGGAG	2 cut(s)	449, 1058
BseXI	GCAGC	1 cut(s)	179
BsgI	GTGCAG	2 cut(s)	818, 1119
Bsh1236I	CGCG	1 cut(s)	58
BshFI	GGCC	4 cut(s)	743, 849, 960, 1161
BslI	CCNNNNNNNGG	6 cut(s)	57, 212, 541, 998, 1127, 1187
BsmAI	GTCTC	3 cut(s)	118, 223, 889
BsmBI	CGTCTC	1 cut(s)	223
BsnI	GGCC	4 cut(s)	743, 849, 960, 1161
Bsp119I	TTCGAA	1 cut(s)	174
Bsp143I	GATC	4 cut(s)	477, 776, 867, 1152
Bsp1720I	GCTNAGC	1 cut(s)	15
Bsp19I	CCATGG	2 cut(s)	207, 744
BspACI	CCGC	4 cut(s)	58, 246, 656, 736
BspANI	GGCC	4 cut(s)	743, 849, 960, 1161
BspCNI	CTCAG	5 cut(s)	28, 151, 532, 741, 1066
BspFNI	CGCG	1 cut(s)	58
BspHI	TCATGA	2 cut(s)	874, 930
BspLI	GGNNCC	1 cut(s)	283
BspMI	ACCTGC	1 cut(s)	1185
BspPI	GGATC	2 cut(s)	784, 1160
BspQI	GCTCTTC	1 cut(s)	654
BspT104I	TTCGAA	1 cut(s)	174
BsrBI	CCGCTC	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	499, 1163, 1181
BssECI	CCNNGG	4 cut(s)	207, 285, 744, 787
BssMI	GATC	4 cut(s)	477, 776, 867, 1152
BssNI	GRCGYC	2 cut(s)	5, 216
BssSI	CACGAG	1 cut(s)	1095
BssT1I	CCWWGG	4 cut(s)	207, 285, 744, 787
Bst2BI	CACGAG	1 cut(s)	1095
Bst2UI	CCWGG	3 cut(s)	423, 912, 999
Bst4CI	ACNGT	4 cut(s)	796, 901, 950, 1219
Bst6I	CTCTTC	1 cut(s)	654
BstACI	GRCGYC	2 cut(s)	5, 216
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	7 cut(s)	15, 138, 540, 728, 1053, 1139, 1156
BstDSI	CCRYGG	2 cut(s)	207, 744
BstF5I	GGATG	2 cut(s)	469, 550
BstFNI	CGCG	1 cut(s)	58
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	2 cut(s)	153, 358
BstKTI	GATC	4 cut(s)	480, 779, 870, 1155
BstMAI	GTCTC	3 cut(s)	118, 223, 889
BstMBI	GATC	4 cut(s)	477, 776, 867, 1152
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 67, 157
BstNI	CCWGG	3 cut(s)	423, 912, 999
BstNSI	RCATGY	3 cut(s)	381, 401, 1108
BstSCI	CCNGG	3 cut(s)	421, 910, 997
BstSFI	CTRYAG	1 cut(s)	1218
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	179
BstV2I	GAAGAC	4 cut(s)	183, 342, 497, 602
BstX2I	RGATCY	1 cut(s)	1152
BstYI	RGATCY	1 cut(s)	1152
BsuRI	GGCC	4 cut(s)	743, 849, 960, 1161
BtgI	CCRYGG	2 cut(s)	207, 744
BtsCI	GGATG	2 cut(s)	469, 550
BveI	ACCTGC	1 cut(s)	1185
Cac8I	GCNNGC	1 cut(s)	510
CaiI	CAGNNNCTG	1 cut(s)	805
CciI	TCATGA	2 cut(s)	874, 930
CfoI	GCGC	2 cut(s)	153, 358
Cfr13I	GGNCC	1 cut(s)	1160
CseI	GACGC	2 cut(s)	188, 205
CsiI	ACCWGGT	1 cut(s)	910
Csp6I	GTAC	2 cut(s)	198, 259
CviQI	GTAC	2 cut(s)	198, 259
DdeI	CTNAG	7 cut(s)	15, 138, 540, 728, 1053, 1139, 1156
DpnI	GATC	4 cut(s)	479, 778, 869, 1154
DpnII	GATC	4 cut(s)	477, 776, 867, 1152
Eam1104I	CTCTTC	1 cut(s)	654
EarI	CTCTTC	1 cut(s)	654
Eco130I	CCWWGG	4 cut(s)	207, 285, 744, 787
Eco32I	GATATC	1 cut(s)	679
Eco57I	CTGAAG	4 cut(s)	105, 707, 827, 1155
EcoRII	CCWGG	3 cut(s)	421, 910, 997
EcoRV	GATATC	1 cut(s)	679
EcoT14I	CCWWGG	4 cut(s)	207, 285, 744, 787
EcoT22I	ATGCAT	2 cut(s)	379, 387
ErhI	CCWWGG	4 cut(s)	207, 285, 744, 787
Esp3I	CGTCTC	1 cut(s)	223
FalI	AAGNNNNNCTT	4 cut(s)	155, 187, 248, 280
FauNDI	CATATG	1 cut(s)	814
FblI	GTMKAC	2 cut(s)	333, 526
Fnu4HI	GCNGC	2 cut(s)	59, 193
FokI	GGATG	2 cut(s)	476, 557
Fsp4HI	GCNGC	2 cut(s)	59, 193
FspBI	CTAG	2 cut(s)	717, 767
GlaI	GCGC	2 cut(s)	152, 357
GluI	GCNGC	2 cut(s)	59, 193
HaeII	RGCGCY	1 cut(s)	154
HaeIII	GGCC	4 cut(s)	743, 849, 960, 1161
HgaI	GACGC	2 cut(s)	188, 205
HhaI	GCGC	2 cut(s)	153, 358
Hin1I	GRCGYC	2 cut(s)	5, 216
Hin6I	GCGC	2 cut(s)	151, 356
HinP1I	GCGC	2 cut(s)	151, 356
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	6 cut(s)	233, 840, 882, 994, 1009, 1015
HphI	GGTGA	4 cut(s)	33, 301, 926, 1013
Hpy166II	GTNNAC	2 cut(s)	334, 527
Hpy188I	TCNGA	9 cut(s)	141, 274, 687, 867, 889, 1014, 1056, 1147, 1174
Hpy188III	TCNNGA	6 cut(s)	64, 230, 251, 481, 875, 931
Hpy8I	GTNNAC	2 cut(s)	334, 527
HpyAV	CCTTC	8 cut(s)	82, 206, 286, 599, 667, 860, 1030, 1221
HpyCH4III	ACNGT	4 cut(s)	796, 901, 950, 1219
HpyCH4V	TGCA	8 cut(s)	344, 377, 385, 575, 799, 821, 896, 1100
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 67, 157
HpyF3I	CTNAG	7 cut(s)	15, 138, 540, 728, 1053, 1139, 1156
Hsp92I	GRCGYC	2 cut(s)	5, 216
HspAI	GCGC	2 cut(s)	151, 356
Kzo9I	GATC	4 cut(s)	477, 776, 867, 1152
LguI	GCTCTTC	1 cut(s)	654
LmnI	GCTCC	2 cut(s)	108, 537
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	2 cut(s)	26, 364
MabI	ACCWGGT	1 cut(s)	910
MaeI	CTAG	2 cut(s)	717, 767
MaeIII	GTNAC	5 cut(s)	731, 914, 1001, 1165, 1222
MalI	GATC	4 cut(s)	479, 778, 869, 1154
MbiI	CCGCTC	1 cut(s)	248
MboI	GATC	4 cut(s)	477, 776, 867, 1152
MflI	RGATCY	1 cut(s)	1152
MluCI	AATT	5 cut(s)	20, 268, 444, 771, 1071
MlyI	GAGTC	3 cut(s)	227, 891, 988
MmeI	TCCRAC	1 cut(s)	156
Mph1103I	ATGCAT	2 cut(s)	379, 387
MroXI	GAANNNNTTC	2 cut(s)	71, 609
MseI	TTAA	1 cut(s)	1133
MslI	CAYNNNNRTG	1 cut(s)	948
MspR9I	CCNGG	3 cut(s)	423, 912, 999
MvaI	CCWGG	3 cut(s)	423, 912, 999
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	3 cut(s)	11, 67, 157
NcoI	CCATGG	2 cut(s)	207, 744
NdeI	CATATG	1 cut(s)	814
NdeII	GATC	4 cut(s)	477, 776, 867, 1152
NlaIV	GGNNCC	1 cut(s)	283
NmuCI	GTSAC	3 cut(s)	914, 1001, 1222
NsiI	ATGCAT	2 cut(s)	379, 387
NspI	RCATGY	3 cut(s)	381, 401, 1108
NspV	TTCGAA	1 cut(s)	174
PagI	TCATGA	2 cut(s)	874, 930
PciSI	GCTCTTC	1 cut(s)	654
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PdmI	GAANNNNTTC	2 cut(s)	71, 609
PfeI	GAWTC	3 cut(s)	840, 1009, 1015
PflFI	GACNNNGTC	1 cut(s)	881
PflMI	CCANNNNNTGG	1 cut(s)	1127
PkrI	GCNGC	2 cut(s)	60, 194
PleI	GAGTC	3 cut(s)	227, 890, 988
PpsI	GAGTC	3 cut(s)	227, 890, 988
Psp6I	CCWGG	3 cut(s)	421, 910, 997
PspGI	CCWGG	3 cut(s)	421, 910, 997
PspN4I	GGNNCC	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	1160
PsrI	GAACNNNNNNTAC	2 cut(s)	402, 434
PstNI	CAGNNNCTG	1 cut(s)	805
PsuI	RGATCY	1 cut(s)	1152
PsyI	GACNNNGTC	1 cut(s)	881
RsaI	GTAC	2 cut(s)	199, 260
RsaNI	GTAC	2 cut(s)	198, 259
RseI	CAYNNNNRTG	1 cut(s)	948
SalI	GTCGAC	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	654
SaqAI	TTAA	1 cut(s)	1133
SatI	GCNGC	2 cut(s)	59, 193
Sau3AI	GATC	4 cut(s)	477, 776, 867, 1152
Sau96I	GGNCC	1 cut(s)	1160
SchI	GAGTC	3 cut(s)	227, 891, 988
ScrFI	CCNGG	3 cut(s)	423, 912, 999
SexAI	ACCWGGT	1 cut(s)	910
SfaNI	GCATC	2 cut(s)	26, 364
SfcI	CTRYAG	1 cut(s)	1218
SfuI	TTCGAA	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	948
SmlI	CTYRAG	5 cut(s)	155, 161, 481, 923, 1077
SmoI	CTYRAG	5 cut(s)	155, 161, 481, 923, 1077
Sse9I	AATT	5 cut(s)	20, 268, 444, 771, 1071
SsiI	CCGC	4 cut(s)	58, 246, 656, 736
SspMI	CTAG	2 cut(s)	717, 767
StyD4I	CCNGG	3 cut(s)	421, 910, 997
StyI	CCWWGG	4 cut(s)	207, 285, 744, 787
TaaI	ACNGT	4 cut(s)	796, 901, 950, 1219
TaqI	TCGA	5 cut(s)	65, 174, 231, 333, 613
TaqII	GACCGA	1 cut(s)	894
TasI	AATT	5 cut(s)	20, 268, 444, 771, 1071
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	3 cut(s)	840, 1009, 1015
Tru1I	TTAA	1 cut(s)	1133
Tru9I	TTAA	1 cut(s)	1133
TseFI	GTSAC	3 cut(s)	914, 1001, 1222
TseI	GCWGC	1 cut(s)	192
Tsp45I	GTSAC	3 cut(s)	914, 1001, 1222
TspDTI	ATGAA	1 cut(s)	845
Tth111I	GACNNNGTC	1 cut(s)	881
Van91I	CCANNNNNTGG	1 cut(s)	1127
XceI	RCATGY	3 cut(s)	381, 401, 1108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1124
XmiI	GTMKAC	2 cut(s)	333, 526
XmnI	GAANNNNTTC	2 cut(s)	71, 609
XspI	CTAG	2 cut(s)	717, 767
Zsp2I	ATGCAT	2 cut(s)	379, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.