Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0013214

Physical Location & Seq

Genomic Coordinates Forward (+)

8877516 .. 8878425

Gene Structure 910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g12620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCAGACAACCAAGCACAGCTTGGAATTGGATCAGTTGTCATTGGAACTGTCCAGAGCCTGAAGCCATATGGTGCCTTTATCGACATTGGTGGAATCAATGGTCTTCTTCATGTTAGCCAGATCAGTCATGACCGAGTCTCAGATATTGCAACAGTTCTCCAACCTGGTGACACTCTCAAGGTCATGATATTGAGCCATGACCGTGAGAGAGGCCGTGTAAGTCTATCTACCAAGAAGTTAGAACCTACTCCTGGTGACATGATTCGCAACCCAACGCTTGTTTTCGAGAAGGCGGAGGAAATGGCACAGACATTCAGGCAGAGAATTGCTCAAGCAGAAGCTATGGCTCGTGCGGACATGCTCCGTTTCCAACCAGAGAGCGGATTAACCCTCAGCTCCGACGGAATCTTGGGTCCTCTTACTTCAGACTTGCCAGTAGAGGGTTTAGATTTGAGCGATGTGCCTCCGGCTGAAGTGACTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Protein Analysis

163

Amino Acids

17.41

Weight (kDa)

4.79

Isoelectric Point (pI)

28.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G30510
fragaria_vesca	FvH4_4g20780 FvH4_4g20780
malus_domestica	MD13G1147900.v1.1 MD16G1147700.v1.1
prunus_persica	Prupe.1G111400_v2.0.a1
pyrus_communis	pycom16g12610 pycom16g12620
rosa_chinensis	RchiOBHm_Chr4g0426221
rosa_laevigata	RLG00000007309
rosa_multiflora	Rmu_sc0000730.1_g000026
rosa_roxburghii	Rroxscaffold_5G00368240
rosa_rugosa	Rorug04G0209700
rosa_samantha	Rh4AG266600 Rh4BG272600 Rh4CG285800 Rh4DG268900
rosa_wichuraiana	Rw4G023050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AccBSI	CCGCTC	1 cut(s)	384
AciI	CCGC	3 cut(s)	296, 356, 384
AclWI	GGATC	1 cut(s)	40
AcuI	CTGAAG	2 cut(s)	83, 411
AfiI	CCNNNNNNNGG	3 cut(s)	254, 383, 443
AjnI	CCWGG	2 cut(s)	166, 253
AluBI	AGCT	3 cut(s)	22, 344, 399
AluI	AGCT	3 cut(s)	22, 344, 399
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	1 cut(s)	40
AlwNI	CAGNNNCTG	1 cut(s)	61
AoxI	GGCC	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	416
AsuHPI	GGTGA	2 cut(s)	182, 269
AvaII	GGWCC	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	74
BauI	CACGAG	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	98
BbvCI	CCTCAGC	1 cut(s)	395
BceAI	ACGGC	1 cut(s)	201
BciT130I	CCWGG	2 cut(s)	168, 255
BcoDI	GTCTC	1 cut(s)	145
Bme1390I	CCNGG	2 cut(s)	168, 255
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	2 cut(s)	76, 417
BmrFI	CCNGG	2 cut(s)	168, 255
BpiI	GAAGAC	1 cut(s)	98
BplI	GAGNNNNNCTC	2 cut(s)	316, 348
Bpu10I	CCTNAGC	1 cut(s)	395
BpuEI	CTTGAG	2 cut(s)	164, 318
Bsc4I	CCNNNNNNNGG	3 cut(s)	254, 383, 443
Bse1I	ACTGG	1 cut(s)	437
BseBI	CCWGG	2 cut(s)	168, 255
BseLI	CCNNNNNNNGG	3 cut(s)	254, 383, 443
BseMII	CTCAG	2 cut(s)	156, 409
BseNI	ACTGG	1 cut(s)	437
BshFI	GGCC	1 cut(s)	216
BshNI	GGYRCC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	470
BslI	CCNNNNNNNGG	3 cut(s)	254, 383, 443
BsmAI	GTCTC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	32, 123
BspACI	CCGC	3 cut(s)	296, 356, 384
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	2 cut(s)	155, 408
BspHI	TCATGA	2 cut(s)	130, 186
BspLI	GGNNCC	2 cut(s)	76, 417
BspPI	GGATC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	74
BsrBI	CCGCTC	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	437
BssMI	GATC	2 cut(s)	32, 123
BssSI	CACGAG	1 cut(s)	351
Bst2BI	CACGAG	1 cut(s)	351
Bst2UI	CCWGG	2 cut(s)	168, 255
Bst4CI	ACNGT	3 cut(s)	52, 157, 206
BstDEI	CTNAG	2 cut(s)	142, 395
BstKTI	GATC	2 cut(s)	35, 126
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	2 cut(s)	32, 123
BstNI	CCWGG	2 cut(s)	168, 255
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	2 cut(s)	166, 253
BstV2I	GAAGAC	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	216
BtgZI	GCGATG	1 cut(s)	474
CaiI	CAGNNNCTG	1 cut(s)	61
CciI	TCATGA	2 cut(s)	130, 186
Cfr13I	GGNCC	1 cut(s)	416
CsiI	ACCWGGT	1 cut(s)	166
CviAII	CATG	6 cut(s)	113, 131, 187, 200, 262, 361
DdeI	CTNAG	2 cut(s)	142, 395
DpnI	GATC	2 cut(s)	34, 125
DpnII	GATC	2 cut(s)	32, 123
EciI	GGCGGA	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	416
Eco57I	CTGAAG	2 cut(s)	83, 411
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	166, 253
FaeI	CATG	6 cut(s)	116, 134, 190, 203, 265, 364
FaiI	YATR	9 cut(s)	70, 72, 114, 132, 188, 201, 263, 347, 362
FalI	AAGNNNNNCTT	1 cut(s)	38
FatI	CATG	6 cut(s)	112, 130, 186, 199, 261, 360
FauNDI	CATATG	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	1 cut(s)	470
Hin1II	CATG	6 cut(s)	116, 134, 190, 203, 265, 364
HinfI	GANTC	4 cut(s)	96, 138, 265, 408
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	2 cut(s)	182, 269
Hpy188I	TCNGA	3 cut(s)	145, 403, 430
Hpy188III	TCNNGA	4 cut(s)	55, 131, 187, 289
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	3 cut(s)	52, 157, 206
HpyCH4V	TGCA	1 cut(s)	152
HpyF3I	CTNAG	2 cut(s)	142, 395
Hsp92II	CATG	6 cut(s)	116, 134, 190, 203, 265, 364
Kzo9I	GATC	2 cut(s)	32, 123
LmnI	GCTCC	2 cut(s)	369, 404
MabI	ACCWGGT	1 cut(s)	166
MaeIII	GTNAC	3 cut(s)	170, 257, 478
MalI	GATC	2 cut(s)	34, 125
MbiI	CCGCTC	1 cut(s)	384
MboI	GATC	2 cut(s)	32, 123
MboII	GAAGA	2 cut(s)	98, 101
MluCI	AATT	2 cut(s)	27, 327
MlyI	GAGTC	1 cut(s)	147
MmeI	TCCRAC	3 cut(s)	187, 397, 426
MnlI	CCTC	6 cut(s)	206, 292, 404, 429, 436, 477
MseI	TTAA	1 cut(s)	389
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	2 cut(s)	168, 255
MvaI	CCWGG	2 cut(s)	168, 255
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	2 cut(s)	32, 123
NlaIII	CATG	6 cut(s)	116, 134, 190, 203, 265, 364
NlaIV	GGNNCC	2 cut(s)	76, 417
NmuCI	GTSAC	3 cut(s)	170, 257, 478
NspI	RCATGY	1 cut(s)	364
PagI	TCATGA	2 cut(s)	130, 186
PfeI	GAWTC	3 cut(s)	96, 265, 408
PflFI	GACNNNGTC	1 cut(s)	137
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PpuMI	RGGWCCY	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	2 cut(s)	166, 253
PspGI	CCWGG	2 cut(s)	166, 253
PspN4I	GGNNCC	2 cut(s)	76, 417
PspPI	GGNCC	1 cut(s)	416
PspPPI	RGGWCCY	1 cut(s)	416
PstNI	CAGNNNCTG	1 cut(s)	61
PsyI	GACNNNGTC	1 cut(s)	137
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	389
Sau3AI	GATC	2 cut(s)	32, 123
Sau96I	GGNCC	1 cut(s)	416
SchI	GAGTC	1 cut(s)	147
ScrFI	CCNGG	2 cut(s)	168, 255
SetI	ASST	6 cut(s)	24, 169, 186, 250, 346, 401
SexAI	ACCWGGT	1 cut(s)	166
SinI	GGWCC	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	179, 333
SmoI	CTYRAG	2 cut(s)	179, 333
Sse9I	AATT	2 cut(s)	27, 327
SsiI	CCGC	3 cut(s)	296, 356, 384
StyD4I	CCNGG	2 cut(s)	166, 253
TaaI	ACNGT	3 cut(s)	52, 157, 206
TaqI	TCGA	2 cut(s)	84, 288
TaqII	GACCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	27, 327
TfiI	GAWTC	3 cut(s)	96, 265, 408
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TseFI	GTSAC	3 cut(s)	170, 257, 478
Tsp45I	GTSAC	3 cut(s)	170, 257, 478
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	2 cut(s)	356, 420
Tth111I	GACNNNGTC	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	416
XceI	RCATGY	1 cut(s)	364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.