MD16G1147700.v1.1

30S ribosomal protein S1

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
11531409 .. 11534335
2927 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1147700.v1.1.491

Sequence Viewer

Length: 1239 bp
ATGGCGTCTCTGGCTCAGCAATTCACAGGCTTAAGATGCTCACCGCTCTCAACCTCGCGGCTCTCGAAGCCCTCAATCCGTCCCAAGCAAAACAAAATGCCGGGTTTGCTCCCCATCGTCTCCGCCGCGGTCATCTCGAATGCGCAGACCAAAGAGCGCCTCAAGCTGAAGGAAATCTTCGAAGACGCCCACGAACGGTGTCGTACAGCCCCCATGGAAGGCGTCTCTTTCACTCTCGACTCCTTTTACAACGCTCTTGAGAAGTACGACTTCAATTCTGAGATTGGAACTAAGGTGAGGGGGACAGTTTTCAATATAGATAACAATGGAGCATTAGTTGACATTACTGCAAAGTCTTCAGCATACTTGCCTTTGCAAGAGGCATGCATTCACAAAATAAAGAGTGTAGAAGAAGTGGGCATAGTTCCCGGAGTGAGAGAGGAATTTGTGATTATAGGTGAAAATGAAGCTGACGACAGCTTGATCTTGAGCTTGAAGTCCATCCAGTATGACCTTGCGTGGGAAAGATGTAGACAGCTCCAAGCTGAGGATGTTGTTGTCAAGGGTAAGGTTGTTGGTGCGAACAAAGGTGGAGTGGTGGCTGTGGTGGAAGGCCTTAGAGGTTTTGTTCCTTTCTCACAGATATCAACAAAATCAACCGCAGAAGATCTTCTTGAAAAGGAGATTCCTCTGAAGTTTGTGGAGGTTGATGAAGAACAGTCTAGGCTTGTTCTCAGTAACCGCAAGGCCATGGCAGACAACCAAGCACAGCTTGGAATTGGATCAGTTGTCATTGGAACGGTCCAGAGCCTGAAGCCATATGGTGCCTTTATCGACATTGGTGGAATCAATGGTCTTCTTCATGTTAGCCAGATCAGTCATGACCGAGTCTCAGATATTGCAACAGTTCTCCAACCTGGTGACACTCTCAAGGTCATGATATTGAGCCATGACCGTGAGAGAGGCCGTGTAAGTCTATCTACCAAGAAGTTAGAACCTACTCCTGGTGACATGATCCGCAACCCAACACTTGTTTTCGAGAAGGCGGAGGAAATGGCACAGACATTCAGGCAGAGAATTGCTCAAGCAGAAGCTATGGCTCGTGCGGACATGCTCCGTTTCCAACCAGAGAGCGGATTAACCCTCAGCTCCGACGGAATCTTGGGTCCTCTTACTTCAGACTTGCCAGTAGAGGGTTTAGATTTGAGCGATGTGCCTCCGGCTGAAGTGACTGACTGA

Protein Analysis

413

Amino Acids

44.93

Weight (kDa)

5.26

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 183 - 246 5.2e-09 S1 RNA binding domain
S1 PF00575 260 - 329 1.6e-17 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013214)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 144
AccB1I GGYRCC 1 cut(s) 824
AccBSI CCGCTC 2 cut(s) 46, 1134
AccI GTMKAC 1 cut(s) 532
AccII CGCG 2 cut(s) 58, 128
AclWI GGATC 2 cut(s) 790, 1009
AcsI RAATTY 1 cut(s) 443
AcuI CTGAAG 5 cut(s) 188, 342, 713, 833, 1161
AcyI GRCGYC 3 cut(s) 5, 186, 222
AfaI GTAC 2 cut(s) 205, 266
AfiI CCNNNNNNNGG 7 cut(s) 195, 218, 520, 547, 1004, 1133, 1193
AflII CTTAAG 1 cut(s) 31
AgsI TTSAA 4 cut(s) 274, 313, 496, 677
AjnI CCWGG 2 cut(s) 916, 1003
AluBI AGCT 9 cut(s) 166, 470, 480, 492, 538, 545, 772, 1094, 1149
AluI AGCT 9 cut(s) 166, 470, 480, 492, 538, 545, 772, 1094, 1149
Alw26I GTCTC 4 cut(s) 12, 124, 229, 895
AlwI GGATC 2 cut(s) 790, 1009
AlwNI CAGNNNCTG 1 cut(s) 811
AoxI GGCC 3 cut(s) 613, 747, 964
ApoI RAATTY 1 cut(s) 443
Asp700I GAANNNNTTC 1 cut(s) 669
AspLEI GCGC 2 cut(s) 145, 159
AspS9I GGNCC 2 cut(s) 802, 1166
AsuC2I CCSGG 2 cut(s) 102, 429
AsuHPI GGTGA 5 cut(s) 33, 307, 470, 932, 1019
AsuII TTCGAA 1 cut(s) 180
AvaII GGWCC 2 cut(s) 802, 1166
BanI GGYRCC 1 cut(s) 824
BauI CACGAG 1 cut(s) 1101
BbsI GAAGAC 3 cut(s) 189, 348, 848
BbvCI CCTCAGC 2 cut(s) 546, 1145
BccI CCATC 2 cut(s) 122, 509
BceAI ACGGC 1 cut(s) 951
BciT130I CCWGG 2 cut(s) 918, 1005
BcnI CCSGG 2 cut(s) 102, 429
BcoDI GTCTC 4 cut(s) 12, 124, 229, 895
BfaI CTAG 1 cut(s) 723
BfoI RGCGCY 1 cut(s) 160
BfrI CTTAAG 1 cut(s) 31
BglII AGATCT 1 cut(s) 667
BisI GCNGC 2 cut(s) 59, 126
BlpI GCTNAGC 1 cut(s) 15
BlsI GCNGC 2 cut(s) 60, 127
Bme1390I CCNGG 4 cut(s) 102, 429, 918, 1005
Bme18I GGWCC 2 cut(s) 802, 1166
BmgT120I GGNCC 2 cut(s) 802, 1166
BmiI GGNNCC 2 cut(s) 826, 1167
BmrFI CCNGG 4 cut(s) 102, 429, 918, 1005
BmsI GCATC 1 cut(s) 26
BpiI GAAGAC 3 cut(s) 189, 348, 848
BplI GAGNNNNNCTC 2 cut(s) 1066, 1098
Bpu10I CCTNAGC 2 cut(s) 546, 1145
Bpu1102I GCTNAGC 1 cut(s) 15
Bpu14I TTCGAA 1 cut(s) 180
BpuEI CTTGAG 5 cut(s) 146, 278, 508, 914, 1068
BpuMI CCSGG 2 cut(s) 102, 429
BsaHI GRCGYC 3 cut(s) 5, 186, 222
BsaJI CCNNGG 3 cut(s) 126, 213, 750
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 7 cut(s) 195, 218, 520, 547, 1004, 1133, 1193
Bse1I ACTGG 2 cut(s) 505, 1187
BseBI CCWGG 2 cut(s) 918, 1005
BseDI CCNNGG 3 cut(s) 126, 213, 750
BseGI GGATG 2 cut(s) 501, 556
BseLI CCNNNNNNNGG 7 cut(s) 195, 218, 520, 547, 1004, 1133, 1193
BseMII CTCAG 6 cut(s) 29, 270, 537, 748, 906, 1159
BseNI ACTGG 2 cut(s) 505, 1187
Bsh1236I CGCG 2 cut(s) 58, 128
BshFI GGCC 3 cut(s) 615, 749, 966
BshNI GGYRCC 1 cut(s) 824
BsiSI CCGG 3 cut(s) 101, 429, 1220
BslFI GGGAC 2 cut(s) 66, 316
BslI CCNNNNNNNGG 7 cut(s) 195, 218, 520, 547, 1004, 1133, 1193
BsmAI GTCTC 4 cut(s) 12, 124, 229, 895
BsmBI CGTCTC 3 cut(s) 12, 124, 229
BsmFI GGGAC 2 cut(s) 66, 316
BsmI GAATGC 2 cut(s) 145, 387
BsnI GGCC 3 cut(s) 615, 749, 966
Bsp119I TTCGAA 1 cut(s) 180
Bsp143I GATC 5 cut(s) 483, 667, 782, 873, 1014
Bsp1720I GCTNAGC 1 cut(s) 15
Bsp19I CCATGG 2 cut(s) 213, 750
BspANI GGCC 3 cut(s) 615, 749, 966
BspCNI CTCAG 6 cut(s) 28, 271, 538, 747, 905, 1158
BspFNI CGCG 2 cut(s) 58, 128
BspHI TCATGA 2 cut(s) 880, 936
BspLI GGNNCC 2 cut(s) 826, 1167
BspPI GGATC 2 cut(s) 790, 1009
BspT104I TTCGAA 1 cut(s) 180
BspT107I GGYRCC 1 cut(s) 824
BspTI CTTAAG 1 cut(s) 31
BsrBI CCGCTC 2 cut(s) 46, 1134
BsrI ACTGG 2 cut(s) 505, 1187
BssECI CCNNGG 3 cut(s) 126, 213, 750
BssMI GATC 5 cut(s) 483, 667, 782, 873, 1014
BssNI GRCGYC 3 cut(s) 5, 186, 222
BssSI CACGAG 1 cut(s) 1101
BssT1I CCWWGG 2 cut(s) 213, 750
Bst2BI CACGAG 1 cut(s) 1101
Bst2UI CCWGG 2 cut(s) 918, 1005
Bst4CI ACNGT 6 cut(s) 198, 307, 720, 802, 907, 956
BstACI GRCGYC 3 cut(s) 5, 186, 222
BstAFI CTTAAG 1 cut(s) 31
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 385
BstDEI CTNAG 8 cut(s) 15, 279, 291, 546, 617, 734, 892, 1145
BstDSI CCRYGG 3 cut(s) 126, 213, 750
BstF5I GGATG 2 cut(s) 501, 556
BstFNI CGCG 2 cut(s) 58, 128
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 2 cut(s) 145, 159
BstKTI GATC 5 cut(s) 486, 670, 785, 876, 1017
BstMAI GTCTC 4 cut(s) 12, 124, 229, 895
BstMBI GATC 5 cut(s) 483, 667, 782, 873, 1014
BstMWI GCNNNNNNNGC 5 cut(s) 11, 36, 67, 106, 163
BstNI CCWGG 2 cut(s) 918, 1005
BstNSI RCATGY 2 cut(s) 387, 1114
BstSCI CCNGG 4 cut(s) 100, 427, 916, 1003
BstUI CGCG 2 cut(s) 58, 128
BstV2I GAAGAC 3 cut(s) 189, 348, 848
BstX2I RGATCY 1 cut(s) 667
BstYI RGATCY 1 cut(s) 667
BsuRI GGCC 3 cut(s) 615, 749, 966
BtgI CCRYGG 3 cut(s) 126, 213, 750
BtgZI GCGATG 1 cut(s) 1224
BtsCI GGATG 2 cut(s) 501, 556
Cac8I GCNNGC 1 cut(s) 385
CaiI CAGNNNCTG 1 cut(s) 811
CciI TCATGA 2 cut(s) 880, 936
CfoI GCGC 2 cut(s) 145, 159
Cfr13I GGNCC 2 cut(s) 802, 1166
Cfr42I CCGCGG 1 cut(s) 129
CseI GACGC 2 cut(s) 194, 211
CsiI ACCWGGT 1 cut(s) 916
Csp6I GTAC 2 cut(s) 204, 265
CviAII CATG 9 cut(s) 214, 384, 751, 863, 881, 937, 950, 1012, 1111
CviQI GTAC 2 cut(s) 204, 265
DdeI CTNAG 8 cut(s) 15, 279, 291, 546, 617, 734, 892, 1145
DpnI GATC 5 cut(s) 485, 669, 784, 875, 1016
DpnII GATC 5 cut(s) 483, 667, 782, 873, 1014
EciI GGCGGA 2 cut(s) 112, 1061
Eco130I CCWWGG 2 cut(s) 213, 750
Eco147I AGGCCT 1 cut(s) 615
Eco32I GATATC 1 cut(s) 645
Eco47I GGWCC 2 cut(s) 802, 1166
Eco57I CTGAAG 5 cut(s) 188, 342, 713, 833, 1161
EcoO109I RGGNCCY 1 cut(s) 1166
EcoRII CCWGG 2 cut(s) 916, 1003
EcoRV GATATC 1 cut(s) 645
EcoT14I CCWWGG 2 cut(s) 213, 750
EcoT22I ATGCAT 1 cut(s) 389
ErhI CCWWGG 2 cut(s) 213, 750
Esp3I CGTCTC 3 cut(s) 12, 124, 229
FaeI CATG 9 cut(s) 217, 387, 754, 866, 884, 940, 953, 1015, 1114
FalI AAGNNNNNCTT 8 cut(s) 161, 193, 254, 286, 657, 689, 756, 788
FaqI GGGAC 2 cut(s) 66, 316
FatI CATG 9 cut(s) 213, 383, 750, 862, 880, 936, 949, 1011, 1110
FauNDI CATATG 1 cut(s) 820
FblI GTMKAC 1 cut(s) 532
Fnu4HI GCNGC 2 cut(s) 59, 126
FokI GGATG 2 cut(s) 488, 563
Fsp4HI GCNGC 2 cut(s) 59, 126
FspBI CTAG 1 cut(s) 723
FspI TGCGCA 1 cut(s) 144
GlaI GCGC 2 cut(s) 144, 158
GluI GCNGC 2 cut(s) 59, 126
HaeII RGCGCY 1 cut(s) 160
HaeIII GGCC 3 cut(s) 615, 749, 966
HapII CCGG 3 cut(s) 101, 429, 1220
HgaI GACGC 2 cut(s) 194, 211
HhaI GCGC 2 cut(s) 145, 159
Hin1I GRCGYC 3 cut(s) 5, 186, 222
Hin1II CATG 9 cut(s) 217, 387, 754, 866, 884, 940, 953, 1015, 1114
Hin6I GCGC 2 cut(s) 143, 157
HinP1I GCGC 2 cut(s) 143, 157
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HinfI GANTC 5 cut(s) 239, 685, 846, 888, 1158
HpaII CCGG 3 cut(s) 101, 429, 1220
HphI GGTGA 5 cut(s) 33, 307, 470, 932, 1019
Hpy166II GTNNAC 2 cut(s) 340, 533
Hpy188I TCNGA 5 cut(s) 280, 693, 895, 1153, 1180
Hpy8I GTNNAC 2 cut(s) 340, 533
Hpy99I CGWCG 1 cut(s) 1157
HpyAV CCTTC 4 cut(s) 163, 212, 605, 1036
HpyCH4III ACNGT 6 cut(s) 198, 307, 720, 802, 907, 956
HpyCH4V TGCA 4 cut(s) 350, 376, 387, 902
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 36, 67, 106, 163
HpyF3I CTNAG 8 cut(s) 15, 279, 291, 546, 617, 734, 892, 1145
Hsp92I GRCGYC 3 cut(s) 5, 186, 222
Hsp92II CATG 9 cut(s) 217, 387, 754, 866, 884, 940, 953, 1015, 1114
HspAI GCGC 2 cut(s) 143, 157
KspI CCGCGG 1 cut(s) 129
Kzo9I GATC 5 cut(s) 483, 667, 782, 873, 1014
LmnI GCTCC 5 cut(s) 114, 329, 543, 1119, 1154
LweI GCATC 1 cut(s) 26
MabI ACCWGGT 1 cut(s) 916
MaeI CTAG 1 cut(s) 723
MaeIII GTNAC 4 cut(s) 737, 920, 1007, 1228
MalI GATC 5 cut(s) 485, 669, 784, 875, 1016
MbiI CCGCTC 2 cut(s) 46, 1134
MboI GATC 5 cut(s) 483, 667, 782, 873, 1014
MboII GAAGA 9 cut(s) 169, 194, 348, 422, 662, 677, 725, 848, 851
MflI RGATCY 1 cut(s) 667
MluCI AATT 5 cut(s) 20, 274, 443, 777, 1077
MlyI GAGTC 2 cut(s) 233, 897
MmeI TCCRAC 3 cut(s) 937, 1147, 1176
Mph1103I ATGCAT 1 cut(s) 389
MroXI GAANNNNTTC 1 cut(s) 669
MseI TTAA 2 cut(s) 32, 1139
MslI CAYNNNNRTG 1 cut(s) 954
MspA1I CMGCKG 1 cut(s) 128
MspCI CTTAAG 1 cut(s) 31
MspI CCGG 3 cut(s) 101, 429, 1220
MspR9I CCNGG 4 cut(s) 102, 429, 918, 1005
Mva1269I GAATGC 2 cut(s) 145, 387
MvaI CCWGG 2 cut(s) 918, 1005
MvnI CGCG 2 cut(s) 58, 128
MwoI GCNNNNNNNGC 5 cut(s) 11, 36, 67, 106, 163
NciI CCSGG 2 cut(s) 102, 429
NcoI CCATGG 2 cut(s) 213, 750
NdeI CATATG 1 cut(s) 820
NdeII GATC 5 cut(s) 483, 667, 782, 873, 1014
NlaIII CATG 9 cut(s) 217, 387, 754, 866, 884, 940, 953, 1015, 1114
NlaIV GGNNCC 2 cut(s) 826, 1167
NmuCI GTSAC 3 cut(s) 920, 1007, 1228
NsbI TGCGCA 1 cut(s) 144
NsiI ATGCAT 1 cut(s) 389
NspI RCATGY 2 cut(s) 387, 1114
NspV TTCGAA 1 cut(s) 180
PaeI GCATGC 1 cut(s) 387
PagI TCATGA 2 cut(s) 880, 936
PceI AGGCCT 1 cut(s) 615
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PctI GAATGC 2 cut(s) 145, 387
PdmI GAANNNNTTC 1 cut(s) 669
PfeI GAWTC 3 cut(s) 685, 846, 1158
PflFI GACNNNGTC 1 cut(s) 887
PfoI TCCNGGA 1 cut(s) 427
PkrI GCNGC 2 cut(s) 60, 127
PleI GAGTC 2 cut(s) 233, 896
PpsI GAGTC 2 cut(s) 233, 896
PpuMI RGGWCCY 1 cut(s) 1166
Psp5II RGGWCCY 1 cut(s) 1166
Psp6I CCWGG 2 cut(s) 916, 1003
PspGI CCWGG 2 cut(s) 916, 1003
PspN4I GGNNCC 2 cut(s) 826, 1167
PspPI GGNCC 2 cut(s) 802, 1166
PspPPI RGGWCCY 1 cut(s) 1166
PstNI CAGNNNCTG 1 cut(s) 811
PsuI RGATCY 1 cut(s) 667
PsyI GACNNNGTC 1 cut(s) 887
RsaI GTAC 2 cut(s) 205, 266
RsaNI GTAC 2 cut(s) 204, 265
RseI CAYNNNNRTG 1 cut(s) 954
SacII CCGCGG 1 cut(s) 129
SaqAI TTAA 2 cut(s) 32, 1139
SatI GCNGC 2 cut(s) 59, 126
Sau3AI GATC 5 cut(s) 483, 667, 782, 873, 1014
Sau96I GGNCC 2 cut(s) 802, 1166
SchI GAGTC 2 cut(s) 233, 897
ScrFI CCNGG 4 cut(s) 102, 429, 918, 1005
SexAI ACCWGGT 1 cut(s) 916
SfaNI GCATC 1 cut(s) 26
Sfr303I CCGCGG 1 cut(s) 129
SfuI TTCGAA 1 cut(s) 180
SgrBI CCGCGG 1 cut(s) 129
SinI GGWCC 2 cut(s) 802, 1166
SmiMI CAYNNNNRTG 1 cut(s) 954
SmlI CTYRAG 6 cut(s) 31, 161, 257, 487, 929, 1083
SmoI CTYRAG 6 cut(s) 31, 161, 257, 487, 929, 1083
SphI GCATGC 1 cut(s) 387
Sse9I AATT 5 cut(s) 20, 274, 443, 777, 1077
SseBI AGGCCT 1 cut(s) 615
SspMI CTAG 1 cut(s) 723
StuI AGGCCT 1 cut(s) 615
StyD4I CCNGG 4 cut(s) 100, 427, 916, 1003
StyI CCWWGG 2 cut(s) 213, 750
TaaI ACNGT 6 cut(s) 198, 307, 720, 802, 907, 956
TaqI TCGA 6 cut(s) 65, 137, 180, 237, 834, 1038
TaqII GACCGA 1 cut(s) 900
TasI AATT 5 cut(s) 20, 274, 443, 777, 1077
TauI GCSGC 2 cut(s) 61, 128
TfiI GAWTC 3 cut(s) 685, 846, 1158
Tru1I TTAA 2 cut(s) 32, 1139
Tru9I TTAA 2 cut(s) 32, 1139
TseFI GTSAC 3 cut(s) 920, 1007, 1228
Tsp45I GTSAC 3 cut(s) 920, 1007, 1228
TspDTI ATGAA 3 cut(s) 480, 726, 851
TspGWI ACGGA 3 cut(s) 68, 1106, 1170
Tth111I GACNNNGTC 1 cut(s) 887
Vha464I CTTAAG 1 cut(s) 31
VpaK11BI GGWCC 2 cut(s) 802, 1166
XapI RAATTY 1 cut(s) 443
XceI RCATGY 2 cut(s) 387, 1114
XcmI CCANNNNNNNNNTGG 1 cut(s) 770
XmiI GTMKAC 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 669
XspI CTAG 1 cut(s) 723
Zsp2I ATGCAT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.