Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011788

Physical Location & Seq

Genomic Coordinates Forward (+)

13634399 .. 13638375

Gene Structure 3977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G35410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGACAAAGAAAATGAGAAGAGTGGGCAAGTACGAGGTTGGTCGCACAATAGGTGAAGGAACCTTTGCTAAGGTTAAGTTTGCGAGGAACACAGACACTGGTGATAATGTAGCCATCAAAATTATGGCTAAGAGTACAATACTTAAGAACAGAATGGTTGATCAGATAAAAAGAGAGATATCTATAATGAAGATTGTTCGTCACCCGAACATAGTGAGGTTGTATGAGGTGTTGGCGAGTCCTTCGAAAATATATATAGTTTTGGAGTTTGTGACAGGAGGAGAGCTCTTTGATAGAATTGTTCATAAAGGGAGGCTTGAAGAAAGTGAGTCTCGGAAATACTTTCAACAGCTTGTAGATGCTGTTGCTCATTGTCACTGCAAGGGTGTTTACCACCGTGACCTAAAGCCAGAAAATCTTTTACTCGATACAAATGGAAATCTGAAGGTTTCGGATTTCGGACTCAGTGCATTGCCTCAGGAAGGAGTAGAACTTCTGCGTACCACATGTGGAACTCCGAACTATGTAGCTCCAGAGGTACTTAGTGGACAGGGTTACGATGGTTCAGCAGCTGATATTTGGTCTTGCGGGGTTATTCTTTTCGTTATATTGGCTGGATATTTACCTTTTTCCGAGACGGATCTTCCAGGGTTGTACAGAAAAATAAATGCAGCAGAGTTTTCTTGTCCACCGTGGTTTTCCGCAGAAGTGAAGTTTTTAATACATAGGATACTTGACCCCAATCCCAAAACACGTATTCAAATTCAAGGAATCAAGAAAGATCCTTGGTTCAGATTAAATTATGTGCCTATACGAGCAAGGGAAGAAGAAGAAGTGAATTTGGATGATATTCGTGCAGTTTTTGATGGAATTGAGGGCAGTTATGTAGCGGAGAATGTAGAGAGAAATGATGAAGGGCCCCTGATGATGAATGCCTTTGAGATGATTACCTTATCACAAGGCTTAAATTTATCTGCACTATTTGACAGGCGACAGGATTTTGTTAAAAGGCAAACCCGTTTTGTTTCTCGAAGGGAACCTAGTGAGATAATTGCTAACATTGAGGCTGTAGCGAACTCAATGGGTTTTAAGTCTCATACACGAAACTTCAAGACAAGGCTCGAGGGATTATCTTCGATCAAGGCCGGACAGTTAGCTGTTGTGATAGAGATTTACGAGGTGGCACCATCGCTTTTCATGGTAGACGTAAGAAAGGCTGCTGGTGAAACTCTTGAATATCACAAGTTCTACAAGAAGCTATGTTCGAAACTGGAAAACATAATATGGAGGGCAACAGAAGGAATACCAAAGTCAGAGATTCTCAGAACAATCACGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009705 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0031090 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

446

Amino Acids

50.63

Weight (kDa)

8.9

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	11 - 264	4.3e-75	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	13 - 259	1.5e-37	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	108 - 252	2.8e-07	Kinase-like
NAF	PF03822	307 - 364	2.9e-18	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35410 AT5G35410
fragaria_vesca	FvH4_1g03090 FvH4_1g03090 FvH4_1g03090
malus_domestica	MD02G1030100.v1.1 MD15G1171600.v1.1
prunus_persica	Prupe.7G244500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0088231
rosa_laevigata	RLG00000015934
rosa_multiflora	Rmu_sc0004235.1_g000049
rosa_roxburghii	Rroxscaffold_2G00152820
rosa_rugosa	Rorug01G0482000 Rorug01G0482000 Rorug01G0482100 Rorug01G0482200
rosa_samantha	Rh2AG037200 Rh2BG036400
rosa_wichuraiana	Rw2G002920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1183
AccI	GTMKAC	1 cut(s)	1203
AciI	CCGC	3 cut(s)	588, 702, 890
AclWI	GGATC	2 cut(s)	648, 776
AcsI	RAATTY	3 cut(s)	762, 838, 967
AcuI	CTGAAG	1 cut(s)	464
AfaI	GTAC	5 cut(s)	32, 136, 502, 540, 656
AfiI	CCNNNNNNNGG	1 cut(s)	482
AflII	CTTAAG	1 cut(s)	143
AflIII	ACRYGT	2 cut(s)	506, 752
AgsI	TTSAA	6 cut(s)	320, 347, 761, 767, 1111, 1235
AjnI	CCWGG	1 cut(s)	646
AluBI	AGCT	6 cut(s)	286, 352, 530, 572, 1157, 1258
AluI	AGCT	6 cut(s)	286, 352, 530, 572, 1157, 1258
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	3 cut(s)	336, 629, 1098
AlwI	GGATC	2 cut(s)	648, 776
AlwNI	CAGNNNCTG	2 cut(s)	98, 572
Ama87I	CYCGRG	1 cut(s)	1121
AoxI	GGCC	2 cut(s)	917, 1143
ApaI	GGGCCC	1 cut(s)	921
ApeKI	GCWGC	3 cut(s)	569, 671, 1217
ApoI	RAATTY	3 cut(s)	762, 838, 967
AspS9I	GGNCC	2 cut(s)	917, 918
AsuHPI	GGTGA	4 cut(s)	65, 113, 194, 1235
AsuII	TTCGAA	2 cut(s)	245, 1265
AvaI	CYCGRG	1 cut(s)	1121
AxyI	CCTNAGG	1 cut(s)	477
BaeGI	GKGCMC	1 cut(s)	921
BanI	GGYRCC	1 cut(s)	1183
BanII	GRGCYC	2 cut(s)	288, 921
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	3 cut(s)	581, 683, 1204
BccI	CCATC	4 cut(s)	122, 554, 860, 1195
BciT130I	CCWGG	1 cut(s)	648
BciVI	GTATCC	1 cut(s)	723
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	3 cut(s)	336, 629, 1098
BfaI	CTAG	1 cut(s)	1041
BfmI	CTRYAG	1 cut(s)	1068
BfrI	CTTAAG	1 cut(s)	143
BfuI	GTATCC	1 cut(s)	723
BisI	GCNGC	3 cut(s)	570, 672, 1218
BlsI	GCNGC	3 cut(s)	571, 673, 1219
Bme1390I	CCNGG	1 cut(s)	648
BmeT110I	CYCGRG	1 cut(s)	1121
BmgT120I	GGNCC	2 cut(s)	917, 918
BmiI	GGNNCC	5 cut(s)	61, 919, 920, 1038, 1185
BmrFI	CCNGG	1 cut(s)	648
BmsI	GCATC	1 cut(s)	349
BplI	GAGNNNNNCTC	2 cut(s)	270, 302
BpmI	CTGGAG	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	69
Bpu14I	TTCGAA	2 cut(s)	245, 1265
BsaAI	YACGTR	1 cut(s)	755
BsaJI	CCNNGG	3 cut(s)	647, 692, 785
Bsc4I	CCNNNNNNNGG	1 cut(s)	482
Bse1I	ACTGG	2 cut(s)	103, 1275
Bse21I	CCTNAGG	1 cut(s)	477
Bse3DI	GCAATG	1 cut(s)	470
BseBI	CCWGG	1 cut(s)	648
BseDI	CCNNGG	3 cut(s)	647, 692, 785
BseGI	GGATG	1 cut(s)	850
BseLI	CCNNNNNNNGG	1 cut(s)	482
BseMI	GCAATG	1 cut(s)	470
BseMII	CTCAG	3 cut(s)	478, 491, 1336
BseNI	ACTGG	2 cut(s)	103, 1275
BseRI	GAGGAG	1 cut(s)	294
BseSI	GKGCMC	1 cut(s)	921
BseXI	GCAGC	3 cut(s)	581, 683, 1204
BsgI	GTGCAG	2 cut(s)	876, 960
BshFI	GGCC	2 cut(s)	919, 1145
BshNI	GGYRCC	1 cut(s)	1183
BsiHKAI	GWGCWC	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	1121
BsiSI	CCGG	1 cut(s)	1146
BslI	CCNNNNNNNGG	1 cut(s)	482
BsmAI	GTCTC	3 cut(s)	336, 629, 1098
BsmBI	CGTCTC	1 cut(s)	629
BsmI	GAATGC	1 cut(s)	937
BsnI	GGCC	2 cut(s)	919, 1145
BsoBI	CYCGRG	1 cut(s)	1121
Bsp119I	TTCGAA	2 cut(s)	245, 1265
Bsp120I	GGGCCC	1 cut(s)	917
Bsp1286I	GDGCHC	2 cut(s)	288, 921
Bsp1407I	TGTACA	1 cut(s)	654
Bsp143I	GATC	4 cut(s)	160, 640, 781, 1137
BspACI	CCGC	3 cut(s)	588, 702, 890
BspANI	GGCC	2 cut(s)	919, 1145
BspCNI	CTCAG	3 cut(s)	477, 490, 1335
BspLI	GGNNCC	5 cut(s)	61, 919, 920, 1038, 1185
BspPI	GGATC	2 cut(s)	648, 776
BspT104I	TTCGAA	2 cut(s)	245, 1265
BspT107I	GGYRCC	1 cut(s)	1183
BspTI	CTTAAG	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	470
BsrGI	TGTACA	1 cut(s)	654
BsrI	ACTGG	2 cut(s)	103, 1275
BssECI	CCNNGG	3 cut(s)	647, 692, 785
BssMI	GATC	4 cut(s)	160, 640, 781, 1137
BssT1I	CCWWGG	1 cut(s)	785
Bst2UI	CCWGG	1 cut(s)	648
Bst4CI	ACNGT	3 cut(s)	398, 693, 1152
Bst6I	CTCTTC	1 cut(s)	13
BstAFI	CTTAAG	1 cut(s)	143
BstAUI	TGTACA	1 cut(s)	654
BstBAI	YACGTR	1 cut(s)	755
BstBI	TTCGAA	2 cut(s)	245, 1265
BstDEI	CTNAG	6 cut(s)	69, 129, 464, 477, 542, 1322
BstDSI	CCRYGG	1 cut(s)	692
BstENI	CCTNNNNNAGG	1 cut(s)	480
BstF5I	GGATG	1 cut(s)	850
BstKTI	GATC	4 cut(s)	163, 643, 784, 1140
BstMAI	GTCTC	3 cut(s)	336, 629, 1098
BstMBI	GATC	4 cut(s)	160, 640, 781, 1137
BstNI	CCWGG	1 cut(s)	648
BstNSI	RCATGY	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	646
BstSFI	CTRYAG	1 cut(s)	1068
BstSLI	GKGCMC	1 cut(s)	921
BstV1I	GCAGC	3 cut(s)	581, 683, 1204
BstX2I	RGATCY	2 cut(s)	640, 781
BstYI	RGATCY	2 cut(s)	640, 781
Bsu36I	CCTNAGG	1 cut(s)	477
BsuI	GTATCC	1 cut(s)	723
BsuRI	GGCC	2 cut(s)	919, 1145
BtgI	CCRYGG	1 cut(s)	692
BtgZI	GCGATG	1 cut(s)	1173
BtsCI	GGATG	1 cut(s)	850
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	3 cut(s)	96, 376, 472
CaiI	CAGNNNCTG	2 cut(s)	98, 572
Cfr13I	GGNCC	2 cut(s)	917, 918
Csp6I	GTAC	5 cut(s)	31, 135, 501, 539, 655
CviAII	CATG	2 cut(s)	507, 1198
CviQI	GTAC	5 cut(s)	31, 135, 501, 539, 655
DdeI	CTNAG	6 cut(s)	69, 129, 464, 477, 542, 1322
DpnI	GATC	4 cut(s)	162, 642, 783, 1139
DpnII	GATC	4 cut(s)	160, 640, 781, 1137
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	785
Eco24I	GRGCYC	2 cut(s)	288, 921
Eco32I	GATATC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	464
Eco81I	CCTNAGG	1 cut(s)	477
Eco88I	CYCGRG	1 cut(s)	1121
EcoICRI	GAGCTC	1 cut(s)	286
EcoNI	CCTNNNNNAGG	1 cut(s)	480
EcoO109I	RGGNCCY	2 cut(s)	917, 918
EcoRII	CCWGG	1 cut(s)	646
EcoRV	GATATC	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	785
EcoT38I	GRGCYC	2 cut(s)	288, 921
ErhI	CCWWGG	1 cut(s)	785
Esp3I	CGTCTC	1 cut(s)	629
FaeI	CATG	2 cut(s)	510, 1201
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	2 cut(s)	506, 1197
FauI	CCCGC	1 cut(s)	581
FbaI	TGATCA	1 cut(s)	160
FblI	GTMKAC	1 cut(s)	1203
Fnu4HI	GCNGC	3 cut(s)	570, 672, 1218
FokI	GGATG	1 cut(s)	857
FriOI	GRGCYC	2 cut(s)	288, 921
Fsp4HI	GCNGC	3 cut(s)	570, 672, 1218
FspBI	CTAG	1 cut(s)	1041
GluI	GCNGC	3 cut(s)	570, 672, 1218
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	2 cut(s)	919, 1145
HapII	CCGG	1 cut(s)	1146
Hin1II	CATG	2 cut(s)	510, 1201
HinfI	GANTC	5 cut(s)	238, 329, 462, 771, 1318
HpaII	CCGG	1 cut(s)	1146
HphI	GGTGA	4 cut(s)	65, 113, 194, 1235
Hpy166II	GTNNAC	4 cut(s)	391, 548, 689, 1204
Hpy188III	TCNNGA	6 cut(s)	479, 533, 775, 1029, 1111, 1232
Hpy8I	GTNNAC	4 cut(s)	391, 548, 689, 1204
HpyAV	CCTTC	7 cut(s)	50, 252, 439, 476, 908, 1026, 1292
HpyCH4III	ACNGT	3 cut(s)	398, 693, 1152
HpyCH4IV	ACGT	3 cut(s)	754, 1206, 1334
HpyCH4V	TGCA	5 cut(s)	381, 470, 671, 857, 977
HpyF3I	CTNAG	6 cut(s)	69, 129, 464, 477, 542, 1322
HpySE526I	ACGT	3 cut(s)	754, 1206, 1334
Hsp92II	CATG	2 cut(s)	510, 1201
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	160, 640, 781, 1137
LmnI	GCTCC	1 cut(s)	535
Lsp1109I	GCAGC	3 cut(s)	581, 683, 1204
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	1041
MaeII	ACGT	3 cut(s)	754, 1206, 1334
MaeIII	GTNAC	5 cut(s)	200, 271, 374, 398, 554
MalI	GATC	4 cut(s)	162, 642, 783, 1139
MboI	GATC	4 cut(s)	160, 640, 781, 1137
MboII	GAAGA	8 cut(s)	30, 202, 332, 635, 836, 839, 842, 1125
MflI	RGATCY	2 cut(s)	640, 781
MhlI	GDGCHC	2 cut(s)	288, 921
MluCI	AATT	8 cut(s)	120, 297, 762, 799, 838, 870, 967, 1050
MlyI	GAGTC	3 cut(s)	247, 338, 456
MseI	TTAA	7 cut(s)	75, 144, 719, 797, 965, 1005, 1089
MspA1I	CMGCKG	1 cut(s)	572
MspCI	CTTAAG	1 cut(s)	143
MspI	CCGG	1 cut(s)	1146
MspR9I	CCNGG	1 cut(s)	648
Mva1269I	GAATGC	1 cut(s)	937
MvaI	CCWGG	1 cut(s)	648
NdeII	GATC	4 cut(s)	160, 640, 781, 1137
NlaIII	CATG	2 cut(s)	510, 1201
NlaIV	GGNNCC	5 cut(s)	61, 919, 920, 1038, 1185
NmuCI	GTSAC	4 cut(s)	200, 271, 374, 398
NspI	RCATGY	1 cut(s)	510
NspV	TTCGAA	2 cut(s)	245, 1265
PaeR7I	CTCGAG	1 cut(s)	1121
PciI	ACATGT	1 cut(s)	506
PctI	GAATGC	1 cut(s)	937
PfeI	GAWTC	2 cut(s)	771, 1318
PkrI	GCNGC	3 cut(s)	571, 673, 1219
PleI	GAGTC	3 cut(s)	246, 337, 456
PpsI	GAGTC	3 cut(s)	246, 337, 456
Ppu21I	YACGTR	1 cut(s)	755
PscI	ACATGT	1 cut(s)	506
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	646
PspGI	CCWGG	1 cut(s)	646
PspN4I	GGNNCC	5 cut(s)	61, 919, 920, 1038, 1185
PspOMI	GGGCCC	1 cut(s)	917
PspPI	GGNCC	2 cut(s)	917, 918
PspXI	VCTCGAGB	1 cut(s)	1121
PstNI	CAGNNNCTG	2 cut(s)	98, 572
PsuI	RGATCY	2 cut(s)	640, 781
PvuII	CAGCTG	1 cut(s)	572
RsaI	GTAC	5 cut(s)	32, 136, 502, 540, 656
RsaNI	GTAC	5 cut(s)	31, 135, 501, 539, 655
SacI	GAGCTC	1 cut(s)	288
SaqAI	TTAA	7 cut(s)	75, 144, 719, 797, 965, 1005, 1089
SatI	GCNGC	3 cut(s)	570, 672, 1218
Sau3AI	GATC	4 cut(s)	160, 640, 781, 1137
Sau96I	GGNCC	2 cut(s)	917, 918
SchI	GAGTC	3 cut(s)	247, 338, 456
ScrFI	CCNGG	1 cut(s)	648
SduI	GDGCHC	2 cut(s)	288, 921
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	1068
Sfr274I	CTCGAG	1 cut(s)	1121
SfuI	TTCGAA	2 cut(s)	245, 1265
SlaI	CTCGAG	1 cut(s)	1121
SmlI	CTYRAG	2 cut(s)	143, 1121
SmoI	CTYRAG	2 cut(s)	143, 1121
Sse9I	AATT	8 cut(s)	120, 297, 762, 799, 838, 870, 967, 1050
SsiI	CCGC	3 cut(s)	588, 702, 890
SspMI	CTAG	1 cut(s)	1041
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	646
StyI	CCWWGG	1 cut(s)	785
TaaI	ACNGT	3 cut(s)	398, 693, 1152
TaiI	ACGT	3 cut(s)	757, 1209, 1337
TaqI	TCGA	6 cut(s)	245, 426, 1030, 1122, 1136, 1265
TasI	AATT	8 cut(s)	120, 297, 762, 799, 838, 870, 967, 1050
TatI	WGTACW	2 cut(s)	134, 654
TfiI	GAWTC	2 cut(s)	771, 1318
Tru1I	TTAA	7 cut(s)	75, 144, 719, 797, 965, 1005, 1089
Tru9I	TTAA	7 cut(s)	75, 144, 719, 797, 965, 1005, 1089
TscAI	CASTG	3 cut(s)	103, 383, 472
TseFI	GTSAC	4 cut(s)	200, 271, 374, 398
TseI	GCWGC	3 cut(s)	569, 671, 1217
Tsp45I	GTSAC	4 cut(s)	200, 271, 374, 398
TspDTI	ATGAA	5 cut(s)	203, 293, 927, 944, 1186
TspGWI	ACGGA	1 cut(s)	653
TspRI	CASTG	3 cut(s)	103, 383, 472
Vha464I	CTTAAG	1 cut(s)	143
XagI	CCTNNNNNAGG	1 cut(s)	480
XapI	RAATTY	3 cut(s)	762, 838, 967
XceI	RCATGY	1 cut(s)	510
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XhoI	CTCGAG	1 cut(s)	1121
XmiI	GTMKAC	1 cut(s)	1203
XspI	CTAG	1 cut(s)	1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.