Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011788

Physical Location & Seq

Genomic Coordinates Forward (+)

2534048 .. 2538834

Gene Structure 4787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG036400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAAGATTGTCAGGCATCCGAATATAGTGAGGTTGCATGAGGTTTTGGCTGGCCGGACAAAGATATATATAATTCTTGAGTTTGTAACCGGAGGAGAATTGTTTGACAAAATTGTTCATCAAGGAAGGCTTCGGGATAATGAATCAAGGAAATACTTTCAGCAGCTTATAGATGCAGTGTCTCATTGTCACAGTAAGGGTGTGTACCACAGAGACCTGAAGCCTGAAAACCTTCTCCTTGATTCTTATGGAAATTTGAAAGTTTCTGATTTTGGACTAAGTGCATTGCCCCAGCAAGGGGTCGGTCTTCTTCACACAACATGTGGAACCCCAAACTATGTCGCCCCTGAGGTGCTGGGCAATCAAGGTTATGATGGTGCAGCTGCTGATGTTTGGTCGTGTGGGGTCATCCTCTTTGTTTTAATGGCTGGATACCTCCCATTTCATGAGACAAACCTTGCTACCTTATATGAAAAGATTAATGCAGCACAGTTCTCCTGCCCGTTTTGGTTCTCTCCAGGGGCAAATTCATTAATACATAAGATACTTGATCCCAATCCTAAAACTCGTATTCGGATTGAAGGAATCAGAAAGGATCCTTGGTTTAGAAAACATTATGCGCCTGTTGAATATAGGGAAGATGAGGAAATCAGTTTAGATGATGTTCATGCAGTCTTTGAGGACATTGAGGATCAATATGCAGAAGAAAGGACAGATAATAAAGACGGCGGTCCTTTATTAATGAATGCATTTGAGATGATTACCCTCTCCCAAGGGCTAAATTTATCTGCTTTGTTCGACAGGAGACAGGATTGTATAAAACGACAAACTCGTTTTGTCTCCCACAAACCAGCTAAAGTTATAATTTCAAATGTAGAAGCTGTTGCAGAATCAATGGGTCTCAAGGTCCATACACGGAATTTCAAGACAAGACTTGAAGGTATATCTGCAAATAAGGCTGGGCAATTTGCAGTTGTCCTCGAGATCTTCGAAGTTGCACCATCCCTTTTTATGGTGGATGTTCGAAAGGCCGCTGGTGAAACTCTTGAATATCACAAGTTTTACAAAAATTTCTGTGCCAAGTTAGATGAGATTATATGGAAACCGAAAGAGGGCACGGCCAGTTCCAATTTACTTAGAACCATGTCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009705 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0031090 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

384

Amino Acids

43.48

Weight (kDa)

6.71

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 202	2e-56	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 197	1.6e-26	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	54 - 151	9.7e-07	Kinase-like
NAF	PF03822	245 - 304	1.2e-19	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35410 AT5G35410
fragaria_vesca	FvH4_1g03090 FvH4_1g03090 FvH4_1g03090
malus_domestica	MD02G1030100.v1.1 MD15G1171600.v1.1
prunus_persica	Prupe.7G244500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0088231
rosa_laevigata	RLG00000015934
rosa_multiflora	Rmu_sc0004235.1_g000049
rosa_roxburghii	Rroxscaffold_2G00152820
rosa_rugosa	Rorug01G0482000 Rorug01G0482000 Rorug01G0482100 Rorug01G0482200
rosa_samantha	Rh2AG037200 Rh2BG036400
rosa_wichuraiana	Rw2G002920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	863
AciI	CCGC	2 cut(s)	729, 1032
AclWI	GGATC	4 cut(s)	545, 590, 603, 699
AcoI	YGGCCR	2 cut(s)	52, 1119
AcsI	RAATTY	5 cut(s)	253, 526, 781, 919, 1069
AcuI	CTGAAG	1 cut(s)	239
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	5 cut(s)	296, 297, 298, 1012, 1112
AflIII	ACRYGT	1 cut(s)	320
AgsI	TTSAA	7 cut(s)	259, 581, 629, 870, 925, 938, 1049
AjnI	CCWGG	1 cut(s)	517
AjuI	GAANNNNNNNTTGG	2 cut(s)	583, 615
AluBI	AGCT	4 cut(s)	166, 383, 854, 881
AluI	AGCT	4 cut(s)	166, 383, 854, 881
Alw26I	GTCTC	6 cut(s)	186, 207, 443, 799, 844, 905
AlwI	GGATC	4 cut(s)	545, 590, 603, 699
AlwNI	CAGNNNCTG	1 cut(s)	386
Ama87I	CYCGRG	1 cut(s)	980
AoxI	GGCC	3 cut(s)	52, 1029, 1119
ApeKI	GCWGC	4 cut(s)	163, 380, 383, 485
ApoI	RAATTY	5 cut(s)	253, 526, 781, 919, 1069
AseI	ATTAAT	3 cut(s)	480, 533, 740
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	622
AspS9I	GGNCC	2 cut(s)	731, 907
AsuHPI	GGTGA	1 cut(s)	1049
AsuII	TTCGAA	2 cut(s)	990, 1024
AvaI	CYCGRG	1 cut(s)	980
AvaII	GGWCC	2 cut(s)	731, 907
AxyI	CCTNAGG	1 cut(s)	348
BaeGI	GKGCMC	1 cut(s)	1118
BamHI	GGATCC	1 cut(s)	595
BbsI	GAAGAC	1 cut(s)	299
BbvI	GCAGC	4 cut(s)	175, 370, 392, 497
BccI	CCATC	2 cut(s)	368, 1009
BceAI	ACGGC	2 cut(s)	742, 1134
BciT130I	CCWGG	1 cut(s)	519
BciVI	GTATCC	1 cut(s)	425
BcoDI	GTCTC	6 cut(s)	186, 207, 443, 799, 844, 905
BfuI	GTATCC	1 cut(s)	425
BglII	AGATCT	1 cut(s)	984
BisI	GCNGC	5 cut(s)	164, 381, 384, 486, 1032
BlsI	GCNGC	5 cut(s)	165, 382, 385, 487, 1033
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	2 cut(s)	731, 907
BmeT110I	CYCGRG	1 cut(s)	980
BmgT120I	GGNCC	2 cut(s)	731, 907
BmiI	GGNNCC	2 cut(s)	328, 597
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	2 cut(s)	25, 163
BoxI	GACNNNNGTC	1 cut(s)	729
BpiI	GAAGAC	1 cut(s)	299
BpmI	CTGGAG	1 cut(s)	501
Bpu14I	TTCGAA	2 cut(s)	990, 1024
BpuEI	CTTGAG	2 cut(s)	98, 887
BsaBI	GATNNNNATC	1 cut(s)	555
BsaI	GGTCTC	2 cut(s)	207, 905
BsaJI	CCNNGG	3 cut(s)	518, 599, 772
BsaWI	WCCGGW	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	5 cut(s)	296, 297, 298, 1012, 1112
Bse1I	ACTGG	1 cut(s)	1122
Bse21I	CCTNAGG	1 cut(s)	348
Bse3DI	GCAATG	1 cut(s)	284
Bse8I	GATNNNNATC	1 cut(s)	555
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	3 cut(s)	518, 599, 772
BseGI	GGATG	4 cut(s)	16, 408, 1001, 1024
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	5 cut(s)	296, 297, 298, 1012, 1112
BseMI	GCAATG	1 cut(s)	284
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	1122
BseRI	GAGGAG	1 cut(s)	108
BseSI	GKGCMC	1 cut(s)	1118
BseXI	GCAGC	4 cut(s)	175, 370, 392, 497
BseYI	CCCAGC	3 cut(s)	291, 355, 959
BsgI	GTGCAG	1 cut(s)	399
BshFI	GGCC	3 cut(s)	54, 1031, 1121
BsiHKCI	CYCGRG	1 cut(s)	980
BsiSI	CCGG	2 cut(s)	55, 90
BslI	CCNNNNNNNGG	5 cut(s)	296, 297, 298, 1012, 1112
BsmAI	GTCTC	6 cut(s)	186, 207, 443, 799, 844, 905
BsmI	GAATGC	1 cut(s)	751
BsnI	GGCC	3 cut(s)	54, 1031, 1121
Bso31I	GGTCTC	2 cut(s)	207, 905
BsoBI	CYCGRG	1 cut(s)	980
Bsp119I	TTCGAA	2 cut(s)	990, 1024
Bsp1286I	GDGCHC	1 cut(s)	1118
Bsp143I	GATC	4 cut(s)	550, 595, 691, 984
BspACI	CCGC	2 cut(s)	729, 1032
BspANI	GGCC	3 cut(s)	54, 1031, 1121
BspCNI	CTCAG	1 cut(s)	340
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	2 cut(s)	328, 597
BspPI	GGATC	4 cut(s)	545, 590, 603, 699
BspT104I	TTCGAA	2 cut(s)	990, 1024
BspTNI	GGTCTC	2 cut(s)	207, 905
BsrDI	GCAATG	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	1122
BssECI	CCNNGG	3 cut(s)	518, 599, 772
BssMI	GATC	4 cut(s)	550, 595, 691, 984
BssT1I	CCWWGG	2 cut(s)	599, 772
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	2 cut(s)	194, 492
BstBI	TTCGAA	2 cut(s)	990, 1024
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	3 cut(s)	278, 348, 1136
BstF5I	GGATG	4 cut(s)	16, 408, 1001, 1024
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	4 cut(s)	553, 598, 694, 987
BstMAI	GTCTC	6 cut(s)	186, 207, 443, 799, 844, 905
BstMBI	GATC	4 cut(s)	550, 595, 691, 984
BstMWI	GCNNNNNNNGC	1 cut(s)	956
BstNI	CCWGG	1 cut(s)	519
BstNSI	RCATGY	1 cut(s)	324
BstPAI	GACNNNNGTC	1 cut(s)	729
BstSCI	CCNGG	1 cut(s)	517
BstSLI	GKGCMC	1 cut(s)	1118
BstV1I	GCAGC	4 cut(s)	175, 370, 392, 497
BstV2I	GAAGAC	1 cut(s)	299
BstX2I	RGATCY	2 cut(s)	595, 984
BstYI	RGATCY	2 cut(s)	595, 984
Bsu36I	CCTNAGG	1 cut(s)	348
BsuI	GTATCC	1 cut(s)	425
BsuRI	GGCC	3 cut(s)	54, 1031, 1121
BtsCI	GGATG	4 cut(s)	16, 408, 1001, 1024
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	52
CaiI	CAGNNNCTG	1 cut(s)	386
CciI	TCATGA	1 cut(s)	445
CfoI	GCGC	1 cut(s)	622
Cfr13I	GGNCC	2 cut(s)	731, 907
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	5 cut(s)	38, 321, 446, 668, 1144
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	3 cut(s)	278, 348, 1136
DpnI	GATC	4 cut(s)	552, 597, 693, 986
DpnII	GATC	4 cut(s)	550, 595, 691, 984
EaeI	YGGCCR	2 cut(s)	52, 1119
Eco130I	CCWWGG	2 cut(s)	599, 772
Eco31I	GGTCTC	2 cut(s)	207, 905
Eco47I	GGWCC	2 cut(s)	731, 907
Eco57I	CTGAAG	1 cut(s)	239
Eco81I	CCTNAGG	1 cut(s)	348
Eco88I	CYCGRG	1 cut(s)	980
EcoRII	CCWGG	1 cut(s)	517
EcoT14I	CCWWGG	2 cut(s)	599, 772
EcoT22I	ATGCAT	1 cut(s)	751
ErhI	CCWWGG	2 cut(s)	599, 772
FaeI	CATG	5 cut(s)	41, 324, 449, 671, 1147
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FatI	CATG	5 cut(s)	37, 320, 445, 667, 1143
Fnu4HI	GCNGC	5 cut(s)	164, 381, 384, 486, 1032
FokI	GGATG	4 cut(s)	3, 395, 988, 1031
Fsp4HI	GCNGC	5 cut(s)	164, 381, 384, 486, 1032
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	5 cut(s)	164, 381, 384, 486, 1032
GsaI	CCCAGC	3 cut(s)	295, 359, 963
GsuI	CTGGAG	1 cut(s)	501
HaeIII	GGCC	3 cut(s)	54, 1031, 1121
HapII	CCGG	2 cut(s)	55, 90
HhaI	GCGC	1 cut(s)	622
Hin1II	CATG	5 cut(s)	41, 324, 449, 671, 1147
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HinfI	GANTC	4 cut(s)	143, 242, 585, 890
HpaII	CCGG	2 cut(s)	55, 90
HphI	GGTGA	1 cut(s)	1049
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	4 cut(s)	21, 268, 576, 590
Hpy188III	TCNNGA	6 cut(s)	77, 134, 446, 925, 982, 1046
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	4 cut(s)	120, 242, 575, 932
HpyCH4III	ACNGT	2 cut(s)	194, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	956
HpyF3I	CTNAG	3 cut(s)	278, 348, 1136
Hsp92II	CATG	5 cut(s)	41, 324, 449, 671, 1147
HspAI	GCGC	1 cut(s)	620
Kzo9I	GATC	4 cut(s)	550, 595, 691, 984
Lsp1109I	GCAGC	4 cut(s)	175, 370, 392, 497
LweI	GCATC	2 cut(s)	25, 163
MaeIII	GTNAC	2 cut(s)	85, 188
MalI	GATC	4 cut(s)	552, 597, 693, 986
MboI	GATC	4 cut(s)	550, 595, 691, 984
MboII	GAAGA	6 cut(s)	16, 299, 302, 650, 716, 979
MflI	RGATCY	2 cut(s)	595, 984
MhlI	GDGCHC	1 cut(s)	1118
Mph1103I	ATGCAT	1 cut(s)	751
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	4 cut(s)	422, 480, 533, 740
MspA1I	CMGCKG	2 cut(s)	383, 1034
MspI	CCGG	2 cut(s)	55, 90
MspR9I	CCNGG	1 cut(s)	519
Mva1269I	GAATGC	1 cut(s)	751
MvaI	CCWGG	1 cut(s)	519
MwoI	GCNNNNNNNGC	1 cut(s)	956
NdeII	GATC	4 cut(s)	550, 595, 691, 984
NlaIII	CATG	5 cut(s)	41, 324, 449, 671, 1147
NlaIV	GGNNCC	2 cut(s)	328, 597
NmuCI	GTSAC	1 cut(s)	188
NsiI	ATGCAT	1 cut(s)	751
NspI	RCATGY	1 cut(s)	324
NspV	TTCGAA	2 cut(s)	990, 1024
PaeR7I	CTCGAG	1 cut(s)	980
PagI	TCATGA	1 cut(s)	445
PciI	ACATGT	1 cut(s)	320
PcsI	WCGNNNNNNNCGW	2 cut(s)	829, 987
PctI	GAATGC	1 cut(s)	751
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	4 cut(s)	143, 242, 585, 890
PkrI	GCNGC	5 cut(s)	165, 382, 385, 487, 1033
PscI	ACATGT	1 cut(s)	320
PshAI	GACNNNNGTC	1 cut(s)	729
PshBI	ATTAAT	3 cut(s)	480, 533, 740
PsiI	TTATAA	1 cut(s)	863
Psp6I	CCWGG	1 cut(s)	517
PspFI	CCCAGC	3 cut(s)	291, 355, 959
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	2 cut(s)	328, 597
PspPI	GGNCC	2 cut(s)	731, 907
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	2 cut(s)	595, 984
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SaqAI	TTAA	4 cut(s)	422, 480, 533, 740
SatI	GCNGC	5 cut(s)	164, 381, 384, 486, 1032
Sau3AI	GATC	4 cut(s)	550, 595, 691, 984
Sau96I	GGNCC	2 cut(s)	731, 907
ScrFI	CCNGG	1 cut(s)	519
SduI	GDGCHC	1 cut(s)	1118
SfaNI	GCATC	2 cut(s)	25, 163
Sfr274I	CTCGAG	1 cut(s)	980
SfuI	TTCGAA	2 cut(s)	990, 1024
SinI	GGWCC	2 cut(s)	731, 907
SlaI	CTCGAG	1 cut(s)	980
SmlI	CTYRAG	3 cut(s)	77, 902, 980
SmoI	CTYRAG	3 cut(s)	77, 902, 980
SsiI	CCGC	2 cut(s)	729, 1032
StyD4I	CCNGG	1 cut(s)	517
StyI	CCWWGG	2 cut(s)	599, 772
TaaI	ACNGT	2 cut(s)	194, 492
TaqI	TCGA	4 cut(s)	798, 981, 990, 1024
TaqII	GACCGA	1 cut(s)	293
TauI	GCSGC	1 cut(s)	1034
TfiI	GAWTC	4 cut(s)	143, 242, 585, 890
Tru1I	TTAA	4 cut(s)	422, 480, 533, 740
Tru9I	TTAA	4 cut(s)	422, 480, 533, 740
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	4 cut(s)	163, 380, 383, 485
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	8 cut(s)	17, 107, 156, 434, 486, 519, 656, 758
TspGWI	ACGGA	1 cut(s)	931
TspRI	CASTG	1 cut(s)	183
VpaK11BI	GGWCC	2 cut(s)	731, 907
VspI	ATTAAT	3 cut(s)	480, 533, 740
XapI	RAATTY	5 cut(s)	253, 526, 781, 919, 1069
XceI	RCATGY	1 cut(s)	324
XhoI	CTCGAG	1 cut(s)	980
XmnI	GAANNNNTTC	1 cut(s)	231
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.