Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011788

Physical Location & Seq

Genomic Coordinates Forward (+)

56968760 .. 56971436

Gene Structure 2677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0482000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGTAGCTCATATAATTATAAATGTTTCAACAGGATGCATTTGTTGCAAGAGGATCCCCCGACCTTCCAATTCTAACTGGACGGTTGCCCTTATCTGCTTTGTTGTTTCCTGGTTCTCGTTTGTAATAGCATTTCTTCTGCTGCTCACTGGTTCTGCACTCAACGATCGACATGGTGTAGAAAGCATGTACTTTGGCAGCTACTACTGTTATGTTGTGAAGCCTGGAGTGTTTGCTGGAGGTGCTGTCTTATCCCTTGCAAGTGTGACCCTAGGAATTTTCTACTACATGACCTTAAATTCAGCAAAGAACAACGACAATCTGTGTGGTAATGCTGTTCAGGGGCCAGCAATAGCTATGGGGCAACCCCAGTTTCCAGCGCAGAATAATACTCAAGACCCTGTCTTTGTCCATGAAGACACTTATATGAGACGGCAATTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009705 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0031090 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

148

Amino Acids

16.28

Weight (kDa)

8.24

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1218	PF06749	1 - 89	8.6e-28	Protein of unknown function (DUF1218)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0011788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35410 AT5G35410
fragaria_vesca	FvH4_1g03090 FvH4_1g03090 FvH4_1g03090
malus_domestica	MD02G1030100.v1.1 MD15G1171600.v1.1
prunus_persica	Prupe.7G244500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0088231
rosa_laevigata	RLG00000015934
rosa_multiflora	Rmu_sc0004235.1_g000049
rosa_roxburghii	Rroxscaffold_2G00152820
rosa_rugosa	Rorug01G0482000 Rorug01G0482000 Rorug01G0482100 Rorug01G0482200
rosa_samantha	Rh2AG037200 Rh2BG036400
rosa_wichuraiana	Rw2G002920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	20
AclWI	GGATC	2 cut(s)	49, 62
AcsI	RAATTY	2 cut(s)	276, 298
AfaI	GTAC	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	30
AjnI	CCWGG	2 cut(s)	110, 223
AluBI	AGCT	3 cut(s)	8, 201, 356
AluI	AGCT	3 cut(s)	8, 201, 356
Alw26I	GTCTC	1 cut(s)	424
AlwI	GGATC	2 cut(s)	49, 62
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	2 cut(s)	142, 198
ApoI	RAATTY	2 cut(s)	276, 298
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
AspA2I	CCTAGG	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	1 cut(s)	344
AvrII	CCTAGG	1 cut(s)	271
BamHI	GGATCC	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	423
BbvI	GCAGC	2 cut(s)	129, 210
BciT130I	CCWGG	2 cut(s)	112, 225
BcoDI	GTCTC	1 cut(s)	424
BfaI	CTAG	1 cut(s)	272
BisI	GCNGC	2 cut(s)	143, 199
BlnI	CCTAGG	1 cut(s)	271
BlsI	GCNGC	2 cut(s)	144, 200
Bme1390I	CCNGG	2 cut(s)	112, 225
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	2 cut(s)	56, 345
BmrFI	CCNGG	2 cut(s)	112, 225
BmrI	ACTGGG	1 cut(s)	364
BmsI	GCATC	1 cut(s)	26
BmuI	ACTGGG	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	423
BpmI	CTGGAG	2 cut(s)	246, 258
BpuEI	CTTGAG	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bse1I	ACTGG	3 cut(s)	83, 154, 370
BseBI	CCWGG	2 cut(s)	112, 225
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	1 cut(s)	41
BseNI	ACTGG	3 cut(s)	83, 154, 370
BseXI	GCAGC	2 cut(s)	129, 210
BsgI	GTGCAG	1 cut(s)	141
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	1 cut(s)	346
BsiEI	CGRYCG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	424
BsmBI	CGTCTC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	346
Bsp143I	GATC	2 cut(s)	54, 166
BspANI	GGCC	1 cut(s)	346
BspLI	GGNNCC	2 cut(s)	56, 345
BspPI	GGATC	2 cut(s)	49, 62
BsrI	ACTGG	3 cut(s)	83, 154, 370
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	2 cut(s)	54, 166
BssT1I	CCWWGG	1 cut(s)	271
Bst2UI	CCWGG	2 cut(s)	112, 225
Bst4CI	ACNGT	2 cut(s)	85, 209
BstAPI	GCANNNNNTGC	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	2 cut(s)	57, 169
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	2 cut(s)	54, 166
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 242
BstNI	CCWGG	2 cut(s)	112, 225
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	2 cut(s)	110, 223
BstV1I	GCAGC	2 cut(s)	129, 210
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	348
CfoI	GCGC	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	190
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviAII	CATG	5 cut(s)	173, 187, 289, 413, 444
CviJI	RGCY	5 cut(s)	8, 201, 223, 346, 356
CviKI_1	RGCY	5 cut(s)	8, 201, 223, 346, 356
CviQI	GTAC	1 cut(s)	190
DpnI	GATC	2 cut(s)	56, 168
DpnII	GATC	2 cut(s)	54, 166
Eco130I	CCWWGG	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	110, 223
EcoT14I	CCWWGG	1 cut(s)	271
EcoT22I	ATGCAT	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	271
Esp3I	CGTCTC	1 cut(s)	424
FaeI	CATG	5 cut(s)	176, 190, 292, 416, 447
FatI	CATG	5 cut(s)	172, 186, 288, 412, 443
Fnu4HI	GCNGC	2 cut(s)	143, 199
FokI	GGATG	1 cut(s)	48
Fsp4HI	GCNGC	2 cut(s)	143, 199
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	2 cut(s)	143, 199
GsuI	CTGGAG	2 cut(s)	246, 258
HaeIII	GGCC	1 cut(s)	346
HhaI	GCGC	1 cut(s)	382
Hin1II	CATG	5 cut(s)	176, 190, 292, 416, 447
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
Hpy188III	TCNNGA	1 cut(s)	395
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	2 cut(s)	85, 209
HpyCH4V	TGCA	4 cut(s)	39, 48, 158, 260
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 242
Hsp92II	CATG	5 cut(s)	176, 190, 292, 416, 447
HspAI	GCGC	1 cut(s)	380
Kzo9I	GATC	2 cut(s)	54, 166
Lsp1109I	GCAGC	2 cut(s)	129, 210
LweI	GCATC	1 cut(s)	26
MaeI	CTAG	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	2 cut(s)	56, 168
MboI	GATC	2 cut(s)	54, 166
MboII	GAAGA	2 cut(s)	128, 428
MflI	RGATCY	1 cut(s)	54
MluCI	AATT	5 cut(s)	15, 70, 276, 298, 437
MnlI	CCTC	2 cut(s)	45, 233
Mph1103I	ATGCAT	1 cut(s)	41
MseI	TTAA	1 cut(s)	296
MslI	CAYNNNNRTG	1 cut(s)	425
MspR9I	CCNGG	2 cut(s)	112, 225
MvaI	CCWGG	2 cut(s)	112, 225
MwoI	GCNNNNNNNGC	2 cut(s)	45, 242
NdeII	GATC	2 cut(s)	54, 166
NlaIII	CATG	5 cut(s)	176, 190, 292, 416, 447
NlaIV	GGNNCC	2 cut(s)	56, 345
NmuCI	GTSAC	1 cut(s)	265
NsiI	ATGCAT	1 cut(s)	41
NspI	RCATGY	1 cut(s)	190
PflFI	GACNNNGTC	1 cut(s)	401
PkrI	GCNGC	2 cut(s)	144, 200
Ple19I	CGATCG	1 cut(s)	169
PsiI	TTATAA	1 cut(s)	20
Psp6I	CCWGG	2 cut(s)	110, 223
PspGI	CCWGG	2 cut(s)	110, 223
PspN4I	GGNNCC	2 cut(s)	56, 345
PspPI	GGNCC	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	54
PsyI	GACNNNGTC	1 cut(s)	401
PvuI	CGATCG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	425
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	2 cut(s)	143, 199
Sau3AI	GATC	2 cut(s)	54, 166
Sau96I	GGNCC	1 cut(s)	344
ScrFI	CCNGG	2 cut(s)	112, 225
SetI	ASST	6 cut(s)	10, 67, 203, 244, 296, 358
SfaNI	GCATC	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
Sse9I	AATT	5 cut(s)	15, 70, 276, 298, 437
SspMI	CTAG	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	110, 223
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	2 cut(s)	85, 209
TaqI	TCGA	1 cut(s)	169
TasI	AATT	5 cut(s)	15, 70, 276, 298, 437
TatI	WGTACW	1 cut(s)	189
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	2 cut(s)	142, 198
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	429
TspRI	CASTG	1 cut(s)	154
Tth111I	GACNNNGTC	1 cut(s)	401
XapI	RAATTY	2 cut(s)	276, 298
XceI	RCATGY	1 cut(s)	190
XmaJI	CCTAGG	1 cut(s)	271
XspI	CTAG	1 cut(s)	272
Zsp2I	ATGCAT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.