Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011788

Physical Location & Seq

Genomic Coordinates Reverse (-)

56974838 .. 56976265

Gene Structure 1428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0482200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCTTCAGCTCTCGAAGGGATGGTGATTGTGATTATGGGTGTCAGTGGTGCTGGGAAATCAACTATAGGTGAGATGCTGGCCAAAGAGACAAACTGTAGCTTTATTGATGCTGATGATTTCCACCCACAGTCAAACAAAGAAAAGATGAGTAAAGGGATCCCTCTTTCAGAGGAAGATCGAATTCCTTGGCTTGAAACACTTCGGAATGCCTTAAGAGAGAACTTGGTCAGTGGAAGCACTGTAATTCTTGGTTGTTCAGCTCTGCAGAAGCGGTACCGAGACATTTTAAGATCTGCAGACCCTAACTATGAACCTGGAAGTTATGCCAGTCTGGTGAAGTTCATCTTGTTAGACACCAAGGCACATGTGCTGGCTGCTCGATTAGAGAAGAGAGTAGCAGAAGGAAAGCATTTCATGCCACCTGAACTTTTGCAGTCTCAGTTAGACTTGCTTCAGATTGATGATTCTGAAGGGATACTTAAAGTTGATGCTAACCTAACTCCACAAGACATAGTAAACACTATCCAAAGATTGTTTTTTGGCTCAAAAGTCGTCCAAGAATGCAACCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009705 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0031090 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

191

Amino Acids

21.11

Weight (kDa)

5.41

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	9 - 148	3e-10	AAA domain
AAA_18	PF13238	10 - 135	2e-09	AAA domain
SKI	PF01202	17 - 132	5.1e-11	Shikimate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35410 AT5G35410
fragaria_vesca	FvH4_1g03090 FvH4_1g03090 FvH4_1g03090
malus_domestica	MD02G1030100.v1.1 MD15G1171600.v1.1
prunus_persica	Prupe.7G244500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0088231
rosa_laevigata	RLG00000015934
rosa_multiflora	Rmu_sc0004235.1_g000049
rosa_roxburghii	Rroxscaffold_2G00152820
rosa_rugosa	Rorug01G0482000 Rorug01G0482000 Rorug01G0482100 Rorug01G0482200
rosa_samantha	Rh2AG037200 Rh2BG036400
rosa_wichuraiana	Rw2G002920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	276
AciI	CCGC	1 cut(s)	274
AclWI	GGATC	2 cut(s)	154, 167
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	183
AcuI	CTGAAG	2 cut(s)	440, 492
AfaI	GTAC	1 cut(s)	278
AflII	CTTAAG	1 cut(s)	214
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	3 cut(s)	11, 102, 263
AluI	AGCT	3 cut(s)	11, 102, 263
Alw26I	GTCTC	3 cut(s)	83, 276, 444
AlwI	GGATC	2 cut(s)	154, 167
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	1 cut(s)	183
Asp700I	GAANNNNTTC	1 cut(s)	201
Asp718I	GGTACC	1 cut(s)	276
AsuHPI	GGTGA	3 cut(s)	37, 83, 349
BalI	TGGCCA	1 cut(s)	83
BamHI	GGATCC	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	1 cut(s)	16
BciT130I	CCWGG	1 cut(s)	318
BciVI	GTATCC	1 cut(s)	471
BcoDI	GTCTC	3 cut(s)	83, 276, 444
BfmI	CTRYAG	4 cut(s)	66, 97, 266, 297
BfrI	CTTAAG	1 cut(s)	214
BfuI	GTATCC	1 cut(s)	471
BglII	AGATCT	1 cut(s)	293
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme1390I	CCNGG	1 cut(s)	318
BmiI	GGNNCC	2 cut(s)	161, 278
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	3 cut(s)	66, 100, 481
BsaJI	CCNNGG	2 cut(s)	188, 360
Bse1I	ACTGG	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	188, 360
BseGI	GGATG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	1 cut(s)	330
BseXI	GCAGC	1 cut(s)	364
BseYI	CCCAGC	1 cut(s)	53
BshFI	GGCC	1 cut(s)	83
BshNI	GGYRCC	1 cut(s)	276
BsmAI	GTCTC	3 cut(s)	83, 276, 444
BsmI	GAATGC	2 cut(s)	214, 569
BsnI	GGCC	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	159, 178, 293
BspACI	CCGC	1 cut(s)	274
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	161, 278
BspMAI	CTGCAG	2 cut(s)	270, 301
BspPI	GGATC	2 cut(s)	154, 167
BspT107I	GGYRCC	1 cut(s)	276
BspTI	CTTAAG	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	330
BssECI	CCNNGG	2 cut(s)	188, 360
BssMI	GATC	3 cut(s)	159, 178, 293
BssT1I	CCWWGG	2 cut(s)	188, 360
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	3 cut(s)	98, 132, 244
Bst6I	CTCTTC	1 cut(s)	386
BstAFI	CTTAAG	1 cut(s)	214
BstAPI	GCANNNNNTGC	1 cut(s)	418
BstC8I	GCNNGC	2 cut(s)	81, 375
BstDEI	CTNAG	1 cut(s)	441
BstF5I	GGATG	1 cut(s)	27
BstKTI	GATC	3 cut(s)	162, 181, 296
BstMAI	GTCTC	3 cut(s)	83, 276, 444
BstMBI	GATC	3 cut(s)	159, 178, 293
BstMWI	GCNNNNNNNGC	1 cut(s)	418
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	316
BstSFI	CTRYAG	4 cut(s)	66, 97, 266, 297
BstV1I	GCAGC	1 cut(s)	364
BstX2I	RGATCY	2 cut(s)	159, 293
BstYI	RGATCY	2 cut(s)	159, 293
BsuI	GTATCC	1 cut(s)	471
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	27
BtsIMutI	CAGTG	3 cut(s)	52, 238, 240
Cac8I	GCNNGC	2 cut(s)	81, 375
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	2 cut(s)	368, 418
CviJI	RGCY	8 cut(s)	5, 11, 83, 102, 193, 263, 377, 546
CviKI_1	RGCY	8 cut(s)	5, 11, 83, 102, 193, 263, 377, 546
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	3 cut(s)	161, 180, 295
DpnII	GATC	3 cut(s)	159, 178, 293
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
Eco130I	CCWWGG	2 cut(s)	188, 360
Eco57I	CTGAAG	2 cut(s)	440, 492
EcoRI	GAATTC	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	316
EcoT14I	CCWWGG	2 cut(s)	188, 360
ErhI	CCWWGG	2 cut(s)	188, 360
FaeI	CATG	2 cut(s)	371, 421
FaiI	YATR	7 cut(s)	38, 68, 312, 327, 369, 419, 515
FalI	AAGNNNNNCTT	4 cut(s)	332, 364, 465, 497
FatI	CATG	2 cut(s)	367, 417
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	378
GluI	GCNGC	1 cut(s)	378
GsaI	CCCAGC	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	83
Hin1II	CATG	2 cut(s)	371, 421
HinfI	GANTC	1 cut(s)	467
HphI	GGTGA	3 cut(s)	37, 83, 349
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	4 cut(s)	172, 207, 459, 472
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	1 cut(s)	520
HpyAV	CCTTC	3 cut(s)	11, 398, 467
HpyCH4III	ACNGT	3 cut(s)	98, 132, 244
HpyCH4V	TGCA	4 cut(s)	268, 299, 436, 567
HpyF10VI	GCNNNNNNNGC	1 cut(s)	418
HpyF3I	CTNAG	1 cut(s)	441
Hsp92II	CATG	2 cut(s)	371, 421
KpnI	GGTACC	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	159, 178, 293
LpnPI	CCDG	8 cut(s)	39, 65, 303, 320, 330, 343, 359, 438
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	3 cut(s)	66, 100, 481
MalI	GATC	3 cut(s)	161, 180, 295
MboI	GATC	3 cut(s)	159, 178, 293
MboII	GAAGA	2 cut(s)	188, 403
MflI	RGATCY	2 cut(s)	159, 293
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	2 cut(s)	183, 246
MluNI	TGGCCA	1 cut(s)	83
MnlI	CCTC	2 cut(s)	166, 174
Mox20I	TGGCCA	1 cut(s)	83
MroXI	GAANNNNTTC	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	3 cut(s)	215, 290, 483
Msp20I	TGGCCA	1 cut(s)	83
MspCI	CTTAAG	1 cut(s)	214
MspR9I	CCNGG	1 cut(s)	318
Mva1269I	GAATGC	2 cut(s)	214, 569
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	418
NdeII	GATC	3 cut(s)	159, 178, 293
NlaIII	CATG	2 cut(s)	371, 421
NlaIV	GGNNCC	2 cut(s)	161, 278
NspI	RCATGY	1 cut(s)	371
PciI	ACATGT	1 cut(s)	367
PctI	GAATGC	2 cut(s)	214, 569
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	467
PkrI	GCNGC	1 cut(s)	379
PscI	ACATGT	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	316
PspFI	CCCAGC	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	161, 278
PstI	CTGCAG	2 cut(s)	270, 301
PsuI	RGATCY	2 cut(s)	159, 293
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SaqAI	TTAA	3 cut(s)	215, 290, 483
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	3 cut(s)	159, 178, 293
ScrFI	CCNGG	1 cut(s)	318
SetI	ASST	7 cut(s)	13, 73, 104, 265, 319, 427, 501
SfaNI	GCATC	3 cut(s)	66, 100, 481
SfcI	CTRYAG	4 cut(s)	66, 97, 266, 297
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	2 cut(s)	183, 246
SsiI	CCGC	1 cut(s)	274
StyD4I	CCNGG	1 cut(s)	316
StyI	CCWWGG	2 cut(s)	188, 360
TaaI	ACNGT	3 cut(s)	98, 132, 244
TaqI	TCGA	3 cut(s)	15, 181, 382
TasI	AATT	2 cut(s)	183, 246
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	3 cut(s)	215, 290, 483
Tru9I	TTAA	3 cut(s)	215, 290, 483
TscAI	CASTG	3 cut(s)	52, 238, 247
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	3 cut(s)	327, 334, 406
TspRI	CASTG	3 cut(s)	52, 238, 247
Vha464I	CTTAAG	1 cut(s)	214
XapI	RAATTY	1 cut(s)	183
XceI	RCATGY	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.