AT5G35630

glutamine synthetase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
13830429 .. 13833542
3114 bp
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UTR
Exon/CDS
Intron
AT5G35630.1

Sequence Viewer

Length: 1293 bp
ATGGCTCAGATCTTAGCAGCTTCTCCAACATGTCAGATGAGAGTGCCTAAACACTCATCAGTCATTGCATCATCATCCAAGTTATGGAGCTCTGTTGTGTTGAAACAGAAGAAGCAGAGCAACAACAAAGTCAGAGGCTTTAGAGTTCTTGCTCTCCAATCTGATAACAGTACTGTCAATAGAGTTGAGACTCTTCTCAATTTAGACACCAAACCTTACTCTGACAGGATCATTGCTGAATACATTTGGATCGGAGGATCTGGAATTGACCTTAGAAGCAAGTCAAGGACTATCGAAAAGCCGGTGGAGGATCCTTCTGAGCTACCTAAGTGGAACTATGATGGTTCGAGTACCGGTCAAGCACCTGGTGAAGATAGTGAAGTGATTCTATACCCGCAAGCTATCTTCAGAGATCCTTTCCGTGGAGGCAATAACATCTTGGTTATCTGTGATACTTGGACACCAGCTGGTGAGCCAATTCCAACAAACAAACGTGCTAAAGCTGCTGAGATCTTCAGTAACAAGAAGGTCTCTGGCGAGGTTCCATGGTTCGGCATTGAACAAGAGTACACTTTACTTCAGCAAAACGTCAAATGGCCTTTAGGTTGGCCTGTTGGAGCGTTCCCTGGTCCTCAGGGTCCTTACTACTGTGGAGTTGGAGCTGACAAGATTTGGGGGCGTGACATTTCAGATGCTCATTACAAAGCTTGTTTATATGCTGGAATTAACATTAGTGGTACTAATGGTGAAGTTATGCCTGGACAGTGGGAGTTCCAAGTTGGCCCGAGCGTAGGAATTGATGCAGGTGATCATGTTTGGTGTGCTAGATACCTTCTTGAGAGAATCACAGAACAAGCTGGTGTTGTCCTAACACTTGATCCCAAACCGATAGAGGGTGACTGGAACGGTGCTGGTTGCCACACCAATTACAGTACCAAGAGCATGAGAGAGGAAGGAGGATTTGAAGTGATCAAGAAGGCTATCTTGAACCTCTCGCTTCGCCACAAGGAGCACATCAGTGCCTACGGTGAAGGAAACGAGAGAAGGTTGACCGGAAAGCACGAGACAGCTAGTATTGACCAGTTCTCATGGGGCGTGGCTAACCGTGGATGCTCTATTCGTGTGGGACGTGACACCGAGGCGAAAGGAAAAGGTTACTTAGAAGATCGCCGTCCAGCATCTAACATGGACCCATACATTGTGACCTCACTTTTGGCAGAGACCACACTCCTGTGGGAGCCAACTCTTGAGGCTGAAGCCCTTGCAGCTCAAAAGCTTTCTTTGAATGTTTAA

Protein Analysis

430

Amino Acids

47.41

Weight (kDa)

6.43

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gln-synt_N PF03951 102 - 154 7e-08 Glutamine synthetase, beta-Grasp domain
Gln-synt_C PF00120 174 - 313 1.1e-10 Glutamine synthetase, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009789)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 794
Acc36I ACCTGC 1 cut(s) 794
AccB7I CCANNNNNTGG 1 cut(s) 84
AciI CCGC 1 cut(s) 395
AclWI GGATC 7 cut(s) 236, 257, 265, 305, 318, 407, 872
AcuI CTGAAG 4 cut(s) 391, 499, 563, 1275
AdeI CACNNNGTG 1 cut(s) 368
AfaI GTAC 5 cut(s) 172, 352, 569, 739, 934
AfiI CCNNNNNNNGG 5 cut(s) 84, 422, 551, 791, 893
AflIII ACRYGT 1 cut(s) 29
AgeI ACCGGT 1 cut(s) 353
AgsI TTSAA 5 cut(s) 103, 560, 965, 988, 1285
AjiI CACGTC 1 cut(s) 1130
AjnI CCWGG 3 cut(s) 364, 625, 757
AleI CACNNNNGTG 2 cut(s) 1017, 1231
Alw21I GWGCWC 2 cut(s) 92, 1014
Alw26I GTCTC 4 cut(s) 182, 535, 1058, 1214
AlwI GGATC 7 cut(s) 236, 257, 265, 305, 318, 407, 872
Ama87I CYCGRG 1 cut(s) 784
AoxI GGCC 3 cut(s) 596, 608, 781
ApeKI GCWGC 3 cut(s) 17, 503, 1265
ArsI GACNNNNNNTTYG 2 cut(s) 1195, 1227
AsiGI ACCGGT 1 cut(s) 353
Asp700I GAANNNNTTC 1 cut(s) 384
AspS9I GGNCC 4 cut(s) 629, 638, 782, 1189
AsuHPI GGTGA 6 cut(s) 380, 482, 758, 818, 908, 1040
AvaI CYCGRG 1 cut(s) 784
AvaII GGWCC 3 cut(s) 629, 638, 1189
AxyI CCTNAGG 1 cut(s) 633
BamHI GGATCC 1 cut(s) 310
BanII GRGCYC 1 cut(s) 92
BauI CACGAG 1 cut(s) 1061
Bbv12I GWGCWC 2 cut(s) 92, 1014
BbvI GCAGC 3 cut(s) 29, 490, 1277
BccI CCATC 1 cut(s) 335
BceAI ACGGC 1 cut(s) 1155
BciT130I CCWGG 3 cut(s) 366, 627, 759
BclI TGATCA 2 cut(s) 808, 969
BcoDI GTCTC 4 cut(s) 182, 535, 1058, 1214
BfaI CTAG 2 cut(s) 825, 1071
BfuAI ACCTGC 1 cut(s) 794
BglII AGATCT 2 cut(s) 9, 510
BisI GCNGC 3 cut(s) 18, 504, 1266
BlsI GCNGC 3 cut(s) 19, 505, 1267
BmcAI AGTACT 1 cut(s) 172
Bme1390I CCNGG 3 cut(s) 366, 627, 759
Bme18I GGWCC 3 cut(s) 629, 638, 1189
BmeT110I CYCGRG 1 cut(s) 784
BmgBI CACGTC 1 cut(s) 1130
BmgT120I GGNCC 4 cut(s) 629, 638, 782, 1189
BmiI GGNNCC 5 cut(s) 312, 543, 639, 1191, 1239
BmrFI CCNGG 3 cut(s) 366, 627, 759
BmsI GCATC 5 cut(s) 77, 682, 790, 1100, 1187
BpuEI CTTGAG 2 cut(s) 857, 1268
BsaI GGTCTC 2 cut(s) 535, 1214
BsaJI CCNNGG 5 cut(s) 421, 545, 625, 1105, 1137
BsaWI WCCGGW 2 cut(s) 353, 1052
Bsc4I CCNNNNNNNGG 5 cut(s) 84, 422, 551, 791, 893
Bse118I RCCGGY 2 cut(s) 301, 353
Bse1I ACTGG 2 cut(s) 905, 1081
Bse21I CCTNAGG 1 cut(s) 633
Bse3DI GCAATG 2 cut(s) 63, 231
BseBI CCWGG 3 cut(s) 366, 627, 759
BseDI CCNNGG 5 cut(s) 421, 545, 625, 1105, 1137
BseGI GGATG 2 cut(s) 74, 1115
BseLI CCNNNNNNNGG 5 cut(s) 84, 422, 551, 791, 893
BseMI GCAATG 2 cut(s) 63, 231
BseMII CTCAG 4 cut(s) 20, 309, 498, 647
BseNI ACTGG 2 cut(s) 905, 1081
BseXI GCAGC 3 cut(s) 29, 490, 1277
BshFI GGCC 3 cut(s) 598, 610, 783
BshTI ACCGGT 1 cut(s) 353
BsiHKAI GWGCWC 2 cut(s) 92, 1014
BsiHKCI CYCGRG 1 cut(s) 784
BsiSI CCGG 3 cut(s) 302, 354, 1053
BslFI GGGAC 1 cut(s) 1140
BslI CCNNNNNNNGG 5 cut(s) 84, 422, 551, 791, 893
BsmAI GTCTC 4 cut(s) 182, 535, 1058, 1214
BsmFI GGGAC 1 cut(s) 1140
BsnI GGCC 3 cut(s) 598, 610, 783
Bso31I GGTCTC 2 cut(s) 535, 1214
BsoBI CYCGRG 1 cut(s) 784
Bsp1286I GDGCHC 2 cut(s) 92, 1014
Bsp19I CCATGG 1 cut(s) 545
BspACI CCGC 1 cut(s) 395
BspANI GGCC 3 cut(s) 598, 610, 783
BspCNI CTCAG 4 cut(s) 19, 310, 499, 646
BspLI GGNNCC 5 cut(s) 312, 543, 639, 1191, 1239
BspMI ACCTGC 1 cut(s) 794
BspPI GGATC 7 cut(s) 236, 257, 265, 305, 318, 407, 872
BspTNI GGTCTC 2 cut(s) 535, 1214
BsrDI GCAATG 2 cut(s) 63, 231
BsrFI RCCGGY 2 cut(s) 301, 353
BsrI ACTGG 2 cut(s) 905, 1081
BssAI RCCGGY 2 cut(s) 301, 353
BssECI CCNNGG 5 cut(s) 421, 545, 625, 1105, 1137
BssSI CACGAG 1 cut(s) 1061
BssT1I CCWWGG 1 cut(s) 545
Bst2BI CACGAG 1 cut(s) 1061
Bst2UI CCWGG 3 cut(s) 366, 627, 759
Bst4CI ACNGT 8 cut(s) 170, 175, 650, 765, 908, 932, 1028, 1106
Bst6I CTCTTC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 8 cut(s) 6, 13, 272, 318, 327, 507, 633, 1159
BstDSI CCRYGG 3 cut(s) 421, 545, 1105
BstF5I GGATG 2 cut(s) 74, 1115
BstMAI GTCTC 4 cut(s) 182, 535, 1058, 1214
BstMWI GCNNNNNNNGC 2 cut(s) 503, 1265
BstNI CCWGG 3 cut(s) 366, 627, 759
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 3 cut(s) 364, 625, 757
BstV1I GCAGC 3 cut(s) 29, 490, 1277
BstX2I RGATCY 5 cut(s) 9, 257, 310, 412, 510
BstYI RGATCY 5 cut(s) 9, 257, 310, 412, 510
Bsu36I CCTNAGG 1 cut(s) 633
BsuRI GGCC 3 cut(s) 598, 610, 783
BtgI CCRYGG 3 cut(s) 421, 545, 1105
BtrI CACGTC 1 cut(s) 1130
BtsCI GGATG 2 cut(s) 74, 1115
BtsIMutI CAGTG 2 cut(s) 770, 1024
BveI ACCTGC 1 cut(s) 794
Cac8I GCNNGC 1 cut(s) 399
Cfr10I RCCGGY 2 cut(s) 301, 353
Cfr13I GGNCC 4 cut(s) 629, 638, 782, 1189
CsiI ACCWGGT 1 cut(s) 364
Csp6I GTAC 5 cut(s) 171, 351, 568, 738, 933
CspAI ACCGGT 1 cut(s) 353
CviAII CATG 6 cut(s) 30, 546, 812, 943, 1089, 1186
CviQI GTAC 5 cut(s) 171, 351, 568, 738, 933
DdeI CTNAG 8 cut(s) 6, 13, 272, 318, 327, 507, 633, 1159
DraIII CACNNNGTG 1 cut(s) 368
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Ecl136II GAGCTC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 545
Eco24I GRGCYC 1 cut(s) 92
Eco31I GGTCTC 2 cut(s) 535, 1214
Eco47I GGWCC 3 cut(s) 629, 638, 1189
Eco53kI GAGCTC 1 cut(s) 90
Eco57I CTGAAG 4 cut(s) 391, 499, 563, 1275
Eco81I CCTNAGG 1 cut(s) 633
Eco88I CYCGRG 1 cut(s) 784
EcoICRI GAGCTC 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 638
EcoRII CCWGG 3 cut(s) 364, 625, 757
EcoT14I CCWWGG 1 cut(s) 545
EcoT38I GRGCYC 1 cut(s) 92
ErhI CCWWGG 1 cut(s) 545
FaeI CATG 6 cut(s) 33, 549, 815, 946, 1092, 1189
FalI AAGNNNNNCTT 2 cut(s) 968, 1000
FaqI GGGAC 1 cut(s) 1140
FatI CATG 6 cut(s) 29, 545, 811, 942, 1088, 1185
FauI CCCGC 1 cut(s) 402
FbaI TGATCA 2 cut(s) 808, 969
Fnu4HI GCNGC 3 cut(s) 18, 504, 1266
FokI GGATG 2 cut(s) 61, 1122
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 3 cut(s) 18, 504, 1266
FspBI CTAG 2 cut(s) 825, 1071
GluI GCNGC 3 cut(s) 18, 504, 1266
HaeIII GGCC 3 cut(s) 598, 610, 783
HapII CCGG 3 cut(s) 302, 354, 1053
Hin1II CATG 6 cut(s) 33, 549, 815, 946, 1092, 1189
HincII GTYRAC 1 cut(s) 1050
HindII GTYRAC 1 cut(s) 1050
HindIII AAGCTT 2 cut(s) 705, 1274
HinfI GANTC 3 cut(s) 190, 385, 843
HpaII CCGG 3 cut(s) 302, 354, 1053
HphI GGTGA 6 cut(s) 380, 482, 758, 818, 908, 1040
Hpy166II GTNNAC 2 cut(s) 570, 1050
Hpy188I TCNGA 9 cut(s) 9, 36, 134, 163, 223, 254, 319, 410, 691
Hpy188III TCNNGA 5 cut(s) 261, 836, 973, 985, 1247
Hpy8I GTNNAC 2 cut(s) 570, 1050
HpyAV CCTTC 7 cut(s) 324, 520, 842, 947, 970, 1025, 1038
HpyCH4III ACNGT 8 cut(s) 170, 175, 650, 765, 908, 932, 1028, 1106
HpyCH4IV ACGT 3 cut(s) 493, 588, 1129
HpyCH4V TGCA 3 cut(s) 68, 803, 1265
HpyF10VI GCNNNNNNNGC 2 cut(s) 503, 1265
HpyF3I CTNAG 8 cut(s) 6, 13, 272, 318, 327, 507, 633, 1159
HpySE526I ACGT 3 cut(s) 493, 588, 1129
Hsp92II CATG 6 cut(s) 33, 549, 815, 946, 1092, 1189
Ksp22I TGATCA 2 cut(s) 808, 969
LmnI GCTCC 5 cut(s) 87, 617, 659, 1009, 1237
Lsp1109I GCAGC 3 cut(s) 29, 490, 1277
LweI GCATC 5 cut(s) 77, 682, 790, 1100, 1187
MabI ACCWGGT 1 cut(s) 364
MaeI CTAG 2 cut(s) 825, 1071
MaeII ACGT 3 cut(s) 493, 588, 1129
MaeIII GTNAC 6 cut(s) 518, 680, 896, 1130, 1154, 1201
MboII GAAGA 6 cut(s) 121, 185, 383, 397, 505, 1175
MflI RGATCY 5 cut(s) 9, 257, 310, 412, 510
MhlI GDGCHC 2 cut(s) 92, 1014
MluCI AATT 6 cut(s) 199, 264, 477, 723, 795, 925
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 4 cut(s) 50, 506, 595, 637
MroXI GAANNNNTTC 1 cut(s) 384
MseI TTAA 2 cut(s) 726, 1291
MslI CAYNNNNRTG 2 cut(s) 1017, 1231
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 3 cut(s) 302, 354, 1053
MspR9I CCNGG 3 cut(s) 366, 627, 759
MvaI CCWGG 3 cut(s) 366, 627, 759
MwoI GCNNNNNNNGC 2 cut(s) 503, 1265
NcoI CCATGG 1 cut(s) 545
NlaIII CATG 6 cut(s) 33, 549, 815, 946, 1092, 1189
NlaIV GGNNCC 5 cut(s) 312, 543, 639, 1191, 1239
NmuCI GTSAC 4 cut(s) 680, 896, 1130, 1201
NspI RCATGY 1 cut(s) 33
OliI CACNNNNGTG 2 cut(s) 1017, 1231
PaqCI CACCTGC 1 cut(s) 794
PciI ACATGT 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 1126
PdmI GAANNNNTTC 1 cut(s) 384
PfeI GAWTC 2 cut(s) 385, 843
PflMI CCANNNNNTGG 1 cut(s) 84
PinAI ACCGGT 1 cut(s) 353
PkrI GCNGC 3 cut(s) 19, 505, 1267
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PpuMI RGGWCCY 1 cut(s) 638
PscI ACATGT 1 cut(s) 29
Psp124BI GAGCTC 1 cut(s) 92
Psp5II RGGWCCY 1 cut(s) 638
Psp6I CCWGG 3 cut(s) 364, 625, 757
PspGI CCWGG 3 cut(s) 364, 625, 757
PspN4I GGNNCC 5 cut(s) 312, 543, 639, 1191, 1239
PspPI GGNCC 4 cut(s) 629, 638, 782, 1189
PspPPI RGGWCCY 1 cut(s) 638
PsuI RGATCY 5 cut(s) 9, 257, 310, 412, 510
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 5 cut(s) 172, 352, 569, 739, 934
RsaNI GTAC 5 cut(s) 171, 351, 568, 738, 933
RseI CAYNNNNRTG 2 cut(s) 1017, 1231
SacI GAGCTC 1 cut(s) 92
SaqAI TTAA 2 cut(s) 726, 1291
SatI GCNGC 3 cut(s) 18, 504, 1266
Sau96I GGNCC 4 cut(s) 629, 638, 782, 1189
ScaI AGTACT 1 cut(s) 172
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 3 cut(s) 366, 627, 759
SduI GDGCHC 2 cut(s) 92, 1014
SexAI ACCWGGT 1 cut(s) 364
SfaNI GCATC 5 cut(s) 77, 682, 790, 1100, 1187
SinI GGWCC 3 cut(s) 629, 638, 1189
SmiMI CAYNNNNRTG 2 cut(s) 1017, 1231
SmlI CTYRAG 2 cut(s) 836, 1247
SmoI CTYRAG 2 cut(s) 836, 1247
Sse9I AATT 6 cut(s) 199, 264, 477, 723, 795, 925
SsiI CCGC 1 cut(s) 395
SspMI CTAG 2 cut(s) 825, 1071
SstI GAGCTC 1 cut(s) 92
StyD4I CCNGG 3 cut(s) 364, 625, 757
StyI CCWWGG 1 cut(s) 545
TaaI ACNGT 8 cut(s) 170, 175, 650, 765, 908, 932, 1028, 1106
TaiI ACGT 3 cut(s) 496, 591, 1132
TaqI TCGA 2 cut(s) 294, 347
TasI AATT 6 cut(s) 199, 264, 477, 723, 795, 925
TatI WGTACW 2 cut(s) 170, 567
TfiI GAWTC 2 cut(s) 385, 843
Tru1I TTAA 2 cut(s) 726, 1291
Tru9I TTAA 2 cut(s) 726, 1291
TscAI CASTG 2 cut(s) 770, 1024
TseFI GTSAC 4 cut(s) 680, 896, 1130, 1201
TseI GCWGC 3 cut(s) 17, 503, 1265
Tsp45I GTSAC 4 cut(s) 680, 896, 1130, 1201
TspGWI ACGGA 1 cut(s) 410
TspRI CASTG 2 cut(s) 770, 1024
Van91I CCANNNNNTGG 1 cut(s) 84
VpaK11BI GGWCC 3 cut(s) 629, 638, 1189
XceI RCATGY 1 cut(s) 33
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 2 cut(s) 825, 1071
ZrmI AGTACT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.