MD13G1180400.v1.1

glutamine synthetase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
15019002 .. 15023494
4493 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1180400.v1.1.491

Sequence Viewer

Length: 1263 bp
ATGAAGATTACAAGGAGCTCAACCACTGCCAGTCCTATGACAGCAAAGATGTGGGGTTCTCTTGTGTTGAAACAGAACAAGAAAGGACCAGCTAGGAGCTCTACTAAATTTAGAGTGCTCGCCACCAAGGCCGAAGGTTATACAATCAACAGGCTAGAGGGTTTACTGAACCTGGACCTTACTCCATTCACTGACAGGATTATTGCCGAGTACATTTGGATCGGAGGGTCAGGGGTTGATGTCCGCAGCAAGTCAAGGACAATATCAAAACCTGTTGAAGATCCGTCTGAGCTTCCAAAGTGGAACTATGATGGATCAAGTACCGGACAAGCACCCGGTGAAGACAGTGAAGTAATCTTATACCCTCAAGCGATATTTAAGGACCCTTTCCGTGGTGGCAACAATATTTTGGTAATTTGTGATGCTTACACACCGCAAGGCGAGCCTATCCCAACTAACAAGCGCGCCAGGGCTGCTGAGATTTTCAAGAACAAGAAGGTTATAGACGAAGTCCCATGGTATGGGATTGAACAAGAGTACACATTACTCCAAACCGATGTGAAATGGCCTTTGGGTTGGCCAGTTGGAGGCTACCCTGGTCCTCAGGGTCCTTACTACTGTGGAGCTGGTGCAGACAAGTCATTCGGCCGTGACATCTCAGATGCTCACTACAAGGCTTGCCTCTATGCTGGAATTAACATCAGCGGCACCAACGGGGAGGTTATGCCTGGCCAGTGGGAGTATCAAGTTGGTCCGAGTGTGGGAATTGAAGCTGGAGATCATATCTGGGCTTCAAGATACATTCTTGAGAGAATCACTGAACAAGCTGGTGTTGTTCTCACACTTGATCCAAAACCAATAGAGGGTGACTGGAACGGTGCAGGATGCCACACCAATTACAGTACAAAGAGCATGAGGGAAGAAGGAGGCTTTGAAGTTATTAAGAAGGCCATTTTGAATCTTTCCCTTCGCCACGGTGAGCACATTAGTGCTTACGGAGAAGGAAATGAGAGAAGGTTGACAGGAAAGCATGAAACAGCCAGCATTAACACATTTTCATGGGGAGTGGCTAATCGTGGTTGCTCAATCCGTGTTGGTCGTGAAACTGAGAAGCAAGGAAAAGGTTATCTGGAGGACCGTCGTCCAGCTTCAAACATGGACCCTTACATTGTGACCTCACTGCTGGCAGAAACTACATTGTTGTGGGAGCCAACCCTTGAGGCTGAAGCTCTTGCAGCTCAAAAGCTTGCATTGAAAGTCTGA

Protein Analysis

421

Amino Acids

46.24

Weight (kDa)

6.64

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gln-synt_N PF03951 80 - 145 7.8e-09 Glutamine synthetase, beta-Grasp domain
Gln-synt_C PF00120 175 - 302 4.2e-10 Glutamine synthetase, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009789)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 707
AccB7I CCANNNNNTGG 1 cut(s) 521
AccII CGCG 1 cut(s) 465
AciI CCGC 3 cut(s) 244, 434, 705
AclWI GGATC 4 cut(s) 227, 275, 322, 842
AcoI YGGCCR 3 cut(s) 578, 646, 730
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 1245
AdeI CACNNNGTG 1 cut(s) 338
AfaI GTAC 4 cut(s) 212, 322, 539, 904
AfiI CCNNNNNNNGG 5 cut(s) 392, 521, 587, 761, 863
AjnI CCWGG 4 cut(s) 171, 467, 595, 727
AjuI GAANNNNNNNTTGG 2 cut(s) 554, 586
AleI CACNNNNGTG 1 cut(s) 987
Alw21I GWGCWC 4 cut(s) 20, 101, 120, 984
AlwI GGATC 4 cut(s) 227, 275, 322, 842
AoxI GGCC 6 cut(s) 129, 566, 578, 646, 730, 948
ApeKI GCWGC 3 cut(s) 246, 473, 1235
ApoI RAATTY 1 cut(s) 107
ArsI GACNNNNNNTTYG 2 cut(s) 626, 658
AspLEI GCGC 2 cut(s) 465, 467
AspS9I GGNCC 8 cut(s) 86, 175, 382, 599, 608, 752, 1135, 1159
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 3 cut(s) 350, 878, 989
AvaII GGWCC 8 cut(s) 86, 175, 382, 599, 608, 752, 1135, 1159
AxyI CCTNAGG 1 cut(s) 603
BalI TGGCCA 2 cut(s) 580, 732
BanI GGYRCC 1 cut(s) 707
BanII GRGCYC 2 cut(s) 20, 101
BbsI GAAGAC 1 cut(s) 348
Bbv12I GWGCWC 4 cut(s) 20, 101, 120, 984
BbvI GCAGC 3 cut(s) 258, 460, 1247
BccI CCATC 1 cut(s) 305
BceAI ACGGC 1 cut(s) 633
BciT130I CCWGG 4 cut(s) 173, 469, 597, 729
BcnI CCSGG 1 cut(s) 336
BfaI CTAG 2 cut(s) 93, 155
BglI GCCNNNNNGGC 1 cut(s) 128
BisI GCNGC 4 cut(s) 247, 474, 706, 1236
BlsI GCNGC 4 cut(s) 248, 475, 707, 1237
Bme1390I CCNGG 5 cut(s) 173, 336, 469, 597, 729
Bme18I GGWCC 8 cut(s) 86, 175, 382, 599, 608, 752, 1135, 1159
BmgT120I GGNCC 8 cut(s) 86, 175, 382, 599, 608, 752, 1135, 1159
BmiI GGNNCC 5 cut(s) 384, 609, 709, 1161, 1209
BmrFI CCNGG 5 cut(s) 173, 336, 469, 597, 729
BmsI GCATC 3 cut(s) 412, 652, 875
BoxI GACNNNNGTC 1 cut(s) 1140
BpiI GAAGAC 1 cut(s) 348
BpmI CTGGAG 2 cut(s) 795, 1151
BpuEI CTTGAG 3 cut(s) 351, 827, 1238
BpuMI CCSGG 1 cut(s) 336
BsaJI CCNNGG 6 cut(s) 126, 391, 468, 515, 595, 973
BsaWI WCCGGW 1 cut(s) 323
Bsc4I CCNNNNNNNGG 5 cut(s) 392, 521, 587, 761, 863
Bse1I ACTGG 4 cut(s) 30, 581, 733, 875
Bse21I CCTNAGG 1 cut(s) 603
BseBI CCWGG 4 cut(s) 173, 469, 597, 729
BseDI CCNNGG 6 cut(s) 126, 391, 468, 515, 595, 973
BseGI GGATG 1 cut(s) 890
BseLI CCNNNNNNNGG 5 cut(s) 392, 521, 587, 761, 863
BseMII CTCAG 5 cut(s) 279, 468, 617, 672, 1098
BseNI ACTGG 4 cut(s) 30, 581, 733, 875
BsePI GCGCGC 1 cut(s) 463
BseX3I CGGCCG 1 cut(s) 646
BseXI GCAGC 3 cut(s) 258, 460, 1247
BsgI GTGCAG 2 cut(s) 651, 900
Bsh1236I CGCG 1 cut(s) 465
Bsh1285I CGRYCG 1 cut(s) 649
BshFI GGCC 6 cut(s) 131, 568, 580, 648, 732, 950
BshNI GGYRCC 1 cut(s) 707
BsiEI CGRYCG 1 cut(s) 649
BsiHKAI GWGCWC 4 cut(s) 20, 101, 120, 984
BsiSI CCGG 2 cut(s) 324, 336
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 5 cut(s) 392, 521, 587, 761, 863
BsmFI GGGAC 1 cut(s) 497
BsnI GGCC 6 cut(s) 131, 568, 580, 648, 732, 950
Bsp1286I GDGCHC 4 cut(s) 20, 101, 120, 984
Bsp143I GATC 5 cut(s) 219, 280, 314, 778, 847
Bsp19I CCATGG 1 cut(s) 515
BspACI CCGC 3 cut(s) 244, 434, 705
BspANI GGCC 6 cut(s) 131, 568, 580, 648, 732, 950
BspCNI CTCAG 5 cut(s) 280, 469, 616, 671, 1099
BspFNI CGCG 1 cut(s) 465
BspLI GGNNCC 5 cut(s) 384, 609, 709, 1161, 1209
BspPI GGATC 4 cut(s) 227, 275, 322, 842
BspT107I GGYRCC 1 cut(s) 707
BsrI ACTGG 4 cut(s) 30, 581, 733, 875
BssECI CCNNGG 6 cut(s) 126, 391, 468, 515, 595, 973
BssHII GCGCGC 1 cut(s) 463
BssMI GATC 5 cut(s) 219, 280, 314, 778, 847
BssT1I CCWWGG 2 cut(s) 126, 515
Bst2UI CCWGG 4 cut(s) 173, 469, 597, 729
Bst4CI ACNGT 6 cut(s) 347, 620, 878, 902, 977, 1139
BstC8I GCNNGC 7 cut(s) 120, 443, 465, 679, 1042, 1185, 1248
BstDEI CTNAG 5 cut(s) 288, 477, 603, 658, 1107
BstDSI CCRYGG 3 cut(s) 391, 515, 973
BstF5I GGATG 1 cut(s) 890
BstFNI CGCG 1 cut(s) 465
BstHHI GCGC 2 cut(s) 465, 467
BstKTI GATC 5 cut(s) 222, 283, 317, 781, 850
BstMBI GATC 5 cut(s) 219, 280, 314, 778, 847
BstMCI CGRYCG 1 cut(s) 649
BstMWI GCNNNNNNNGC 4 cut(s) 128, 442, 473, 1235
BstNI CCWGG 4 cut(s) 173, 469, 597, 729
BstPAI GACNNNNGTC 1 cut(s) 1140
BstSCI CCNGG 5 cut(s) 171, 334, 467, 595, 727
BstUI CGCG 1 cut(s) 465
BstV1I GCAGC 3 cut(s) 258, 460, 1247
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BstZI CGGCCG 1 cut(s) 646
Bsu36I CCTNAGG 1 cut(s) 603
BsuRI GGCC 6 cut(s) 131, 568, 580, 648, 732, 950
BtgI CCRYGG 3 cut(s) 391, 515, 973
BtsCI GGATG 1 cut(s) 890
BtsI GCAGTG 2 cut(s) 24, 1178
BtsIMutI CAGTG 6 cut(s) 24, 189, 352, 740, 816, 1178
Cac8I GCNNGC 7 cut(s) 120, 443, 465, 679, 1042, 1185, 1248
CfoI GCGC 2 cut(s) 465, 467
Cfr13I GGNCC 8 cut(s) 86, 175, 382, 599, 608, 752, 1135, 1159
Csp6I GTAC 4 cut(s) 211, 321, 538, 903
CviAII CATG 5 cut(s) 516, 913, 1031, 1059, 1156
CviQI GTAC 4 cut(s) 211, 321, 538, 903
DdeI CTNAG 5 cut(s) 288, 477, 603, 658, 1107
DpnI GATC 5 cut(s) 221, 282, 316, 780, 849
DpnII GATC 5 cut(s) 219, 280, 314, 778, 847
DraIII CACNNNGTG 1 cut(s) 338
EaeI YGGCCR 3 cut(s) 578, 646, 730
EagI CGGCCG 1 cut(s) 646
Ecl136II GAGCTC 2 cut(s) 18, 99
EclXI CGGCCG 1 cut(s) 646
Eco130I CCWWGG 2 cut(s) 126, 515
Eco24I GRGCYC 2 cut(s) 20, 101
Eco47I GGWCC 8 cut(s) 86, 175, 382, 599, 608, 752, 1135, 1159
Eco52I CGGCCG 1 cut(s) 646
Eco53kI GAGCTC 2 cut(s) 18, 99
Eco57I CTGAAG 1 cut(s) 1245
Eco81I CCTNAGG 1 cut(s) 603
EcoICRI GAGCTC 2 cut(s) 18, 99
EcoO109I RGGNCCY 2 cut(s) 382, 608
EcoRII CCWGG 4 cut(s) 171, 467, 595, 727
EcoT14I CCWWGG 2 cut(s) 126, 515
EcoT38I GRGCYC 2 cut(s) 20, 101
ErhI CCWWGG 2 cut(s) 126, 515
FaeI CATG 5 cut(s) 519, 916, 1034, 1062, 1159
FaqI GGGAC 1 cut(s) 497
FatI CATG 5 cut(s) 515, 912, 1030, 1058, 1155
Fnu4HI GCNGC 4 cut(s) 247, 474, 706, 1236
FokI GGATG 1 cut(s) 897
FriOI GRGCYC 2 cut(s) 20, 101
Fsp4HI GCNGC 4 cut(s) 247, 474, 706, 1236
FspBI CTAG 2 cut(s) 93, 155
GlaI GCGC 2 cut(s) 464, 466
GluI GCNGC 4 cut(s) 247, 474, 706, 1236
GsuI CTGGAG 2 cut(s) 795, 1151
HaeIII GGCC 6 cut(s) 131, 568, 580, 648, 732, 950
HapII CCGG 2 cut(s) 324, 336
HhaI GCGC 2 cut(s) 465, 467
Hin1II CATG 5 cut(s) 519, 916, 1034, 1062, 1159
Hin6I GCGC 2 cut(s) 463, 465
HinP1I GCGC 2 cut(s) 463, 465
HincII GTYRAC 1 cut(s) 1020
HindII GTYRAC 1 cut(s) 1020
HindIII AAGCTT 1 cut(s) 1244
HinfI GANTC 2 cut(s) 813, 958
HpaII CCGG 2 cut(s) 324, 336
HphI GGTGA 3 cut(s) 350, 878, 989
Hpy166II GTNNAC 3 cut(s) 164, 540, 1020
Hpy188I TCNGA 5 cut(s) 224, 289, 661, 756, 1262
Hpy188III TCNNGA 5 cut(s) 487, 795, 806, 1100, 1130
Hpy8I GTNNAC 3 cut(s) 164, 540, 1020
Hpy99I CGWCG 1 cut(s) 1143
HpyAV CCTTC 7 cut(s) 128, 490, 917, 940, 977, 995, 1008
HpyCH4III ACNGT 6 cut(s) 347, 620, 878, 902, 977, 1139
HpyCH4V TGCA 4 cut(s) 632, 881, 1235, 1250
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 442, 473, 1235
HpyF3I CTNAG 5 cut(s) 288, 477, 603, 658, 1107
Hsp92II CATG 5 cut(s) 519, 916, 1034, 1062, 1159
HspAI GCGC 2 cut(s) 463, 465
Kzo9I GATC 5 cut(s) 219, 280, 314, 778, 847
LmnI GCTCC 4 cut(s) 15, 96, 623, 1207
Lsp1109I GCAGC 3 cut(s) 258, 460, 1247
LweI GCATC 3 cut(s) 412, 652, 875
MaeI CTAG 2 cut(s) 93, 155
MaeIII GTNAC 3 cut(s) 650, 866, 1171
MalI GATC 5 cut(s) 221, 282, 316, 780, 849
MboI GATC 5 cut(s) 219, 280, 314, 778, 847
MboII GAAGA 4 cut(s) 16, 290, 353, 932
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 4 cut(s) 20, 101, 120, 984
MlsI TGGCCA 2 cut(s) 580, 732
MluCI AATT 5 cut(s) 107, 414, 693, 765, 895
MluNI TGGCCA 2 cut(s) 580, 732
MmeI TCCRAC 1 cut(s) 565
Mox20I TGGCCA 2 cut(s) 580, 732
MscI TGGCCA 2 cut(s) 580, 732
MseI TTAA 4 cut(s) 378, 696, 942, 1047
MslI CAYNNNNRTG 3 cut(s) 987, 1057, 1201
Msp20I TGGCCA 2 cut(s) 580, 732
MspA1I CMGCKG 1 cut(s) 705
MspI CCGG 2 cut(s) 324, 336
MspR9I CCNGG 5 cut(s) 173, 336, 469, 597, 729
MvaI CCWGG 4 cut(s) 173, 469, 597, 729
MvnI CGCG 1 cut(s) 465
MwoI GCNNNNNNNGC 4 cut(s) 128, 442, 473, 1235
NciI CCSGG 1 cut(s) 336
NcoI CCATGG 1 cut(s) 515
NdeII GATC 5 cut(s) 219, 280, 314, 778, 847
NlaIII CATG 5 cut(s) 519, 916, 1034, 1062, 1159
NlaIV GGNNCC 5 cut(s) 384, 609, 709, 1161, 1209
NmeAIII GCCGAG 1 cut(s) 232
NmuCI GTSAC 3 cut(s) 650, 866, 1171
OliI CACNNNNGTG 1 cut(s) 987
PauI GCGCGC 1 cut(s) 463
PfeI GAWTC 2 cut(s) 813, 958
PflFI GACNNNGTC 1 cut(s) 509
PflMI CCANNNNNTGG 1 cut(s) 521
PkrI GCNGC 4 cut(s) 248, 475, 707, 1237
PpuMI RGGWCCY 2 cut(s) 382, 608
PshAI GACNNNNGTC 1 cut(s) 1140
Psp124BI GAGCTC 2 cut(s) 20, 101
Psp5II RGGWCCY 2 cut(s) 382, 608
Psp6I CCWGG 4 cut(s) 171, 467, 595, 727
PspGI CCWGG 4 cut(s) 171, 467, 595, 727
PspN4I GGNNCC 5 cut(s) 384, 609, 709, 1161, 1209
PspPI GGNCC 8 cut(s) 86, 175, 382, 599, 608, 752, 1135, 1159
PspPPI RGGWCCY 2 cut(s) 382, 608
PsuI RGATCY 1 cut(s) 280
PsyI GACNNNGTC 1 cut(s) 509
PteI GCGCGC 1 cut(s) 463
RsaI GTAC 4 cut(s) 212, 322, 539, 904
RsaNI GTAC 4 cut(s) 211, 321, 538, 903
RseI CAYNNNNRTG 3 cut(s) 987, 1057, 1201
SacI GAGCTC 2 cut(s) 20, 101
SaqAI TTAA 4 cut(s) 378, 696, 942, 1047
SatI GCNGC 4 cut(s) 247, 474, 706, 1236
Sau3AI GATC 5 cut(s) 219, 280, 314, 778, 847
Sau96I GGNCC 8 cut(s) 86, 175, 382, 599, 608, 752, 1135, 1159
ScrFI CCNGG 5 cut(s) 173, 336, 469, 597, 729
SduI GDGCHC 4 cut(s) 20, 101, 120, 984
SfaNI GCATC 3 cut(s) 412, 652, 875
SinI GGWCC 8 cut(s) 86, 175, 382, 599, 608, 752, 1135, 1159
SmiMI CAYNNNNRTG 3 cut(s) 987, 1057, 1201
SmlI CTYRAG 3 cut(s) 366, 806, 1217
SmoI CTYRAG 3 cut(s) 366, 806, 1217
Sse9I AATT 5 cut(s) 107, 414, 693, 765, 895
SsiI CCGC 3 cut(s) 244, 434, 705
SspI AATATT 1 cut(s) 406
SspMI CTAG 2 cut(s) 93, 155
SstI GAGCTC 2 cut(s) 20, 101
StyD4I CCNGG 5 cut(s) 171, 334, 467, 595, 727
StyI CCWWGG 2 cut(s) 126, 515
TaaI ACNGT 6 cut(s) 347, 620, 878, 902, 977, 1139
TasI AATT 5 cut(s) 107, 414, 693, 765, 895
TatI WGTACW 3 cut(s) 210, 537, 902
TauI GCSGC 1 cut(s) 708
TfiI GAWTC 2 cut(s) 813, 958
Tru1I TTAA 4 cut(s) 378, 696, 942, 1047
Tru9I TTAA 4 cut(s) 378, 696, 942, 1047
TscAI CASTG 6 cut(s) 31, 196, 352, 740, 823, 1185
TseFI GTSAC 3 cut(s) 650, 866, 1171
TseI GCWGC 3 cut(s) 246, 473, 1235
Tsp45I GTSAC 3 cut(s) 650, 866, 1171
TspDTI ATGAA 3 cut(s) 17, 1047, 1047
TspGWI ACGGA 4 cut(s) 273, 380, 1011, 1079
TspRI CASTG 6 cut(s) 31, 196, 352, 740, 823, 1185
Tth111I GACNNNGTC 1 cut(s) 509
Van91I CCANNNNNTGG 1 cut(s) 521
VpaK11BI GGWCC 8 cut(s) 86, 175, 382, 599, 608, 752, 1135, 1159
XapI RAATTY 1 cut(s) 107
XspI CTAG 2 cut(s) 93, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.