Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009789

Physical Location & Seq

Genomic Coordinates Reverse (-)

27330992 .. 27332029

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0156300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGGAACTTCCATTGCTGAAGGAGAAAGGTGGTGTTGTTCTGCGGGTTTGAAATCAGGAACCCTAAAAAGTGTGGAGATTGAAATCTTGTGGAACAAACACTCAGTGCCCTTTTTCTTGAGGAGGGTTCTTATGGAGGAGTTGGGAGCCCAACATTTCCCATGCAGTAATCACCAGTTATTATTGGAGACTGCAGTACATGCAGTGCTCCTAGACTCTGGTTTTGTCCGCTTTGACTCCGATTCGGTTTCAGGTGTCTCCGGTATGTCCCTCTCTTATACTGTGCCTGATATTTTGCAAAATCTAGGAGGCAGTATCCAAGGAATTGGGTTGAGATTTGAGAAGTTGGATAAATCTGTAAGGGTTAATGGGTCTTTAACCGGCGAGGATTCTGTGTACTCGGTGAGCTTGGAGGTGGAGAAGGTTGCATCCTTTATCGAATTCCTTTGGGCAAGTAAAGTTGATGTGAATGATATTGTTACAGTAGGACTACTTGAGAAGCAAGAAACACAAGTTTTTAATTTTTGGAGGACCATCAAAGATGAAATTTCATTGCCATTAATGATTGATCTTTGCGCAAAGGCGGGGTTACCCTCTCCACCTTGCCTTATGAGTCTTCCTCCAGAGCTCAAGACAAAGATTTTATGGTCACTATCTGGTGTGAATATTGCAGCAATAGAATGTGTGTGCAAGGAGCTGCAGAAACTTGGGAATGACGGTGAGTTGTGGAAGCACAGGTTAGGGCAGCAGTTTCCTGGCGAGTTAATGAAGAAGAAGAAGAAGAATGATATGCAAACAACAGAGTGGAAGATGTTGTTTCGAGAAAGATGGAGGCAACGCAGGCGAGTGAGGGAGGCATCAAGCAGAGAATATTATAAAAGGGAGGAGAAGAGGAAGAGGCCTTTACCATTCCTTTCTCTTGATTCTGAACAAGAGGAGTATTGGAAAAATTCTCCTCAAACAGGACGGAGAATTGGACTAGGACCGAGATCTGCTATAGGAAAGCTCCTCGAATCCTCGAATGACGAACCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004356 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006082 GO:0006520 GO:0006536 GO:0006541 GO:0006807 GO:0006950 GO:0006970 GO:0007568 GO:0008150 GO:0008152 GO:0009064 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016211 GO:0016874 GO:0016879 GO:0016880 GO:0019676 GO:0019740 GO:0019752 GO:0022626 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032502 GO:0032991 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0055035 GO:0071704 GO:1901564 GO:1901605 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Gln-synt_C Gln-synt_N

Protein Analysis

345

Amino Acids

39.15

Weight (kDa)

8.37

Isoelectric Point (pI)

59.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35630 AT5G35630 AT5G35630
fragaria_vesca	FvH4_4g14190 FvH4_4g14190
malus_domestica	MD13G1180400.v1.1 MD16G1181300.v1.1
prunus_persica	Prupe.1G148700_v2.0.a1
pyrus_communis	pycom13g15570 pycom16g15210
rosa_chinensis	RchiOBHm_Chr4g0419011
rosa_laevigata	RLG00000007833
rosa_multiflora	Rmu_sc0005646.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362070
rosa_rugosa	Rorug04G0156200 Rorug04G0156300
rosa_samantha	Rh4AG217900 Rh4BG212300 Rh4CG229900 Rh4DG216500
rosa_wichuraiana	Rw4G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	876
Acc16I	TGCGCA	1 cut(s)	577
AciI	CCGC	3 cut(s)	44, 229, 584
AcsI	RAATTY	3 cut(s)	440, 546, 949
AcuI	CTGAAG	1 cut(s)	39
AdeI	CACNNNGTG	1 cut(s)	106
AfaI	GTAC	2 cut(s)	198, 398
AfiI	CCNNNNNNNGG	1 cut(s)	962
AgsI	TTSAA	2 cut(s)	52, 83
AjnI	CCWGG	1 cut(s)	754
AluBI	AGCT	4 cut(s)	408, 628, 697, 1006
AluI	AGCT	4 cut(s)	408, 628, 697, 1006
Alw21I	GWGCWC	2 cut(s)	210, 630
Alw26I	GTCTC	2 cut(s)	182, 262
AoxI	GGCC	1 cut(s)	899
ApeKI	GCWGC	3 cut(s)	671, 697, 745
ApoI	RAATTY	3 cut(s)	440, 546, 949
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AseI	ATTAAT	1 cut(s)	560
AspLEI	GCGC	1 cut(s)	578
AspS9I	GGNCC	2 cut(s)	531, 983
AsuHPI	GGTGA	3 cut(s)	164, 415, 731
AvaII	GGWCC	2 cut(s)	531, 983
BaeGI	GKGCMC	1 cut(s)	111
BanII	GRGCYC	2 cut(s)	151, 630
BbsI	GAAGAC	1 cut(s)	608
Bbv12I	GWGCWC	2 cut(s)	210, 630
BbvI	GCAGC	3 cut(s)	683, 684, 757
BccI	CCATC	2 cut(s)	542, 822
BciT130I	CCWGG	1 cut(s)	756
BciVI	GTATCC	1 cut(s)	326
BcoDI	GTCTC	2 cut(s)	182, 262
BfaI	CTAG	3 cut(s)	212, 305, 980
BfmI	CTRYAG	3 cut(s)	192, 698, 996
BfuI	GTATCC	1 cut(s)	326
BglII	AGATCT	1 cut(s)	989
BisI	GCNGC	3 cut(s)	672, 698, 746
BlsI	GCNGC	3 cut(s)	673, 699, 747
Bme1390I	CCNGG	1 cut(s)	756
Bme18I	GGWCC	2 cut(s)	531, 983
BmgT120I	GGNCC	2 cut(s)	531, 983
BmiI	GGNNCC	2 cut(s)	61, 148
BmrFI	CCNGG	1 cut(s)	756
BmsI	GCATC	2 cut(s)	437, 866
BpiI	GAAGAC	1 cut(s)	608
BplI	GAGNNNNNCTC	2 cut(s)	604, 636
BpmI	CTGGAG	1 cut(s)	606
BpuEI	CTTGAG	3 cut(s)	139, 515, 614
BsaBI	GATNNNNATC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	319
BsaWI	WCCGGW	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	962
Bse118I	RCCGGY	1 cut(s)	380
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	2 cut(s)	12, 551
Bse8I	GATNNNNATC	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	756
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	428
BseJI	GATNNNNATC	1 cut(s)	83
BseLI	CCNNNNNNNGG	1 cut(s)	962
BseMI	GCAATG	2 cut(s)	12, 551
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	6 cut(s)	136, 152, 899, 945, 950, 998
BseSI	GKGCMC	1 cut(s)	111
BseXI	GCAGC	3 cut(s)	683, 684, 757
BshFI	GGCC	1 cut(s)	901
BsiHKAI	GWGCWC	2 cut(s)	210, 630
BsiSI	CCGG	2 cut(s)	261, 381
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	1 cut(s)	962
BsmAI	GTCTC	2 cut(s)	182, 262
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	901
Bsp1286I	GDGCHC	4 cut(s)	111, 151, 210, 630
Bsp143I	GATC	2 cut(s)	568, 989
BspACI	CCGC	3 cut(s)	44, 229, 584
BspANI	GGCC	1 cut(s)	901
BspCNI	CTCAG	1 cut(s)	116
BspLI	GGNNCC	2 cut(s)	61, 148
BspMAI	CTGCAG	2 cut(s)	196, 702
BsrDI	GCAATG	2 cut(s)	12, 551
BsrFI	RCCGGY	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	175
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	2 cut(s)	568, 989
BssT1I	CCWWGG	1 cut(s)	319
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	3 cut(s)	283, 484, 719
Bst6I	CTCTTC	2 cut(s)	884, 890
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	842
BstDEI	CTNAG	1 cut(s)	103
BstEII	GGTNACC	1 cut(s)	588
BstENI	CCTNNNNNAGG	1 cut(s)	960
BstF5I	GGATG	1 cut(s)	428
BstHHI	GCGC	1 cut(s)	578
BstKTI	GATC	2 cut(s)	571, 992
BstMAI	GTCTC	2 cut(s)	182, 262
BstMBI	GATC	2 cut(s)	568, 989
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 841
BstNI	CCWGG	1 cut(s)	756
BstNSI	RCATGY	1 cut(s)	203
BstPI	GGTNACC	1 cut(s)	588
BstSCI	CCNGG	1 cut(s)	754
BstSFI	CTRYAG	3 cut(s)	192, 698, 996
BstSLI	GKGCMC	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	683, 684, 757
BstV2I	GAAGAC	1 cut(s)	608
BstX2I	RGATCY	1 cut(s)	989
BstXI	CCANNNNNNTGG	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	989
BsuI	GTATCC	1 cut(s)	326
BsuRI	GGCC	1 cut(s)	901
BtsCI	GGATG	1 cut(s)	428
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	2 cut(s)	111, 210
Cac8I	GCNNGC	1 cut(s)	842
CfoI	GCGC	1 cut(s)	578
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	2 cut(s)	531, 983
Csp6I	GTAC	2 cut(s)	197, 397
CviAII	CATG	2 cut(s)	162, 200
CviJI	RGCY	6 cut(s)	149, 408, 628, 697, 901, 1006
CviKI_1	RGCY	6 cut(s)	149, 408, 628, 697, 901, 1006
CviQI	GTAC	2 cut(s)	197, 397
DdeI	CTNAG	1 cut(s)	103
DpnI	GATC	2 cut(s)	570, 991
DpnII	GATC	2 cut(s)	568, 989
DraIII	CACNNNGTG	1 cut(s)	106
Eam1104I	CTCTTC	2 cut(s)	884, 890
EarI	CTCTTC	2 cut(s)	884, 890
Ecl136II	GAGCTC	1 cut(s)	628
Eco130I	CCWWGG	1 cut(s)	319
Eco147I	AGGCCT	1 cut(s)	901
Eco24I	GRGCYC	2 cut(s)	151, 630
Eco47I	GGWCC	2 cut(s)	531, 983
Eco53kI	GAGCTC	1 cut(s)	628
Eco57I	CTGAAG	1 cut(s)	39
Eco91I	GGTNACC	1 cut(s)	588
EcoICRI	GAGCTC	1 cut(s)	628
EcoNI	CCTNNNNNAGG	1 cut(s)	960
EcoO65I	GGTNACC	1 cut(s)	588
EcoRI	GAATTC	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	754
EcoT14I	CCWWGG	1 cut(s)	319
EcoT38I	GRGCYC	2 cut(s)	151, 630
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	2 cut(s)	165, 203
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	2 cut(s)	161, 199
FauI	CCCGC	2 cut(s)	37, 577
Fnu4HI	GCNGC	3 cut(s)	672, 698, 746
FokI	GGATG	1 cut(s)	415
FriOI	GRGCYC	2 cut(s)	151, 630
Fsp4HI	GCNGC	3 cut(s)	672, 698, 746
FspBI	CTAG	3 cut(s)	212, 305, 980
FspI	TGCGCA	1 cut(s)	577
GlaI	GCGC	1 cut(s)	577
GluI	GCNGC	3 cut(s)	672, 698, 746
GsuI	CTGGAG	1 cut(s)	606
HaeIII	GGCC	1 cut(s)	901
HapII	CCGG	2 cut(s)	261, 381
HhaI	GCGC	1 cut(s)	578
Hin1II	CATG	2 cut(s)	165, 203
Hin6I	GCGC	1 cut(s)	576
HinP1I	GCGC	1 cut(s)	576
HinfI	GANTC	7 cut(s)	215, 236, 242, 389, 613, 923, 1013
HpaII	CCGG	2 cut(s)	261, 381
HphI	GGTGA	3 cut(s)	164, 415, 731
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	2 cut(s)	241, 928
Hpy188III	TCNNGA	6 cut(s)	57, 118, 623, 631, 821, 920
Hpy8I	GTNNAC	1 cut(s)	397
HpyAV	CCTTC	2 cut(s)	14, 415
HpyCH4III	ACNGT	3 cut(s)	283, 484, 719
HpyCH4V	TGCA	9 cut(s)	165, 194, 203, 298, 428, 671, 690, 700, 793
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 841
HpyF3I	CTNAG	1 cut(s)	103
Hsp92II	CATG	2 cut(s)	165, 203
HspAI	GCGC	1 cut(s)	576
Kzo9I	GATC	2 cut(s)	568, 989
LmnI	GCTCC	4 cut(s)	146, 213, 694, 1011
Lsp1109I	GCAGC	3 cut(s)	683, 684, 757
LweI	GCATC	2 cut(s)	437, 866
MaeI	CTAG	3 cut(s)	212, 305, 980
MaeIII	GTNAC	3 cut(s)	478, 588, 648
MalI	GATC	2 cut(s)	570, 991
MboI	GATC	2 cut(s)	568, 989
MboII	GAAGA	9 cut(s)	608, 781, 784, 787, 790, 793, 820, 901, 907
MflI	RGATCY	1 cut(s)	989
MhlI	GDGCHC	4 cut(s)	111, 151, 210, 630
MluCI	AATT	6 cut(s)	324, 440, 520, 546, 949, 972
MlyI	GAGTC	3 cut(s)	209, 230, 622
MmeI	TCCRAC	1 cut(s)	327
MseI	TTAA	6 cut(s)	366, 377, 519, 560, 764, 1036
MspI	CCGG	2 cut(s)	261, 381
MspR9I	CCNGG	1 cut(s)	756
MvaI	CCWGG	1 cut(s)	756
MwoI	GCNNNNNNNGC	2 cut(s)	200, 841
NdeII	GATC	2 cut(s)	568, 989
NlaIII	CATG	2 cut(s)	165, 203
NlaIV	GGNNCC	2 cut(s)	61, 148
NmuCI	GTSAC	1 cut(s)	648
NsbI	TGCGCA	1 cut(s)	577
NspI	RCATGY	1 cut(s)	203
PceI	AGGCCT	1 cut(s)	901
PfeI	GAWTC	4 cut(s)	242, 389, 923, 1013
PkrI	GCNGC	3 cut(s)	673, 699, 747
PleI	GAGTC	3 cut(s)	209, 230, 621
PpsI	GAGTC	3 cut(s)	209, 230, 621
PshBI	ATTAAT	1 cut(s)	560
PsiI	TTATAA	1 cut(s)	876
Psp124BI	GAGCTC	1 cut(s)	630
Psp6I	CCWGG	1 cut(s)	754
PspEI	GGTNACC	1 cut(s)	588
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	2 cut(s)	61, 148
PspPI	GGNCC	2 cut(s)	531, 983
PstI	CTGCAG	2 cut(s)	196, 702
PsuI	RGATCY	1 cut(s)	989
RsaI	GTAC	2 cut(s)	198, 398
RsaNI	GTAC	2 cut(s)	197, 397
SacI	GAGCTC	1 cut(s)	630
SaqAI	TTAA	6 cut(s)	366, 377, 519, 560, 764, 1036
SatI	GCNGC	3 cut(s)	672, 698, 746
Sau3AI	GATC	2 cut(s)	568, 989
Sau96I	GGNCC	2 cut(s)	531, 983
SchI	GAGTC	3 cut(s)	209, 230, 622
ScrFI	CCNGG	1 cut(s)	756
SduI	GDGCHC	4 cut(s)	111, 151, 210, 630
SfaNI	GCATC	2 cut(s)	437, 866
SfcI	CTRYAG	3 cut(s)	192, 698, 996
SinI	GGWCC	2 cut(s)	531, 983
SmlI	CTYRAG	3 cut(s)	118, 494, 629
SmoI	CTYRAG	3 cut(s)	118, 494, 629
Sse9I	AATT	6 cut(s)	324, 440, 520, 546, 949, 972
SseBI	AGGCCT	1 cut(s)	901
SsiI	CCGC	3 cut(s)	44, 229, 584
SspI	AATATT	2 cut(s)	667, 872
SspMI	CTAG	3 cut(s)	212, 305, 980
SstI	GAGCTC	1 cut(s)	630
StuI	AGGCCT	1 cut(s)	901
StyD4I	CCNGG	1 cut(s)	754
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	3 cut(s)	283, 484, 719
TaqI	TCGA	4 cut(s)	438, 820, 1011, 1019
TaqII	GACCGA	1 cut(s)	1000
TasI	AATT	6 cut(s)	324, 440, 520, 546, 949, 972
TatI	WGTACW	2 cut(s)	196, 396
TfiI	GAWTC	4 cut(s)	242, 389, 923, 1013
Tru1I	TTAA	6 cut(s)	366, 377, 519, 560, 764, 1036
Tru9I	TTAA	6 cut(s)	366, 377, 519, 560, 764, 1036
TscAI	CASTG	2 cut(s)	111, 210
TseFI	GTSAC	1 cut(s)	648
TseI	GCWGC	3 cut(s)	671, 697, 745
Tsp45I	GTSAC	1 cut(s)	648
TspDTI	ATGAA	3 cut(s)	540, 558, 782
TspGWI	ACGGA	1 cut(s)	982
TspRI	CASTG	2 cut(s)	111, 210
VpaK11BI	GGWCC	2 cut(s)	531, 983
VspI	ATTAAT	1 cut(s)	560
XagI	CCTNNNNNAGG	1 cut(s)	960
XapI	RAATTY	3 cut(s)	440, 546, 949
XceI	RCATGY	1 cut(s)	203
XspI	CTAG	3 cut(s)	212, 305, 980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.