Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009789

Physical Location & Seq

Genomic Coordinates Forward (+)

46859301 .. 46862515

Gene Structure 3215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG229900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGACAGGAAAGATGTGGAGTTCTCTAGTGTTGAAACAGAACAAGAAAGGAGCTGTTAAAAGCTCTAAGTTCAAAGTTTTTGCCTCCAAGTATGAAGATTACACCATAAACAGGGTTGAGGGTTTACTAAATTTGGACCTTACTCCATACACGGACAAGATTATTGCCGAGTACATTTGGATCGGAGGGTCTGGTATCGATGTGCGTAGCAAGTCAAGGACGATATCAAAGCCTGTTGAACATCCGTCTGAGCTTCCAAAGTGGAACTATGATGGATCAAGTACCGGACAGGCACCCGGTGAAGACAGTGAAGTGATCTTATACCCTCAAGCGATATTCAAGGACCCCTTTCGTGGTGGCAACAATTTATTGGTAATTTGTGATGCATACACGCCCCAAGGCGAGCCTATACCAACAAACAAACGGCACAAGGCTGCTCAGGTTTTTAGCAACCAGAAGGTTGTAGATGAAGTTCCATGGTATGGGATAGAGCAAGAGTACACATTACTTCAATCCAACGTGAAATGGCCTTTAGGTTGGCCAGTCGGAGGTTATCCTGGTCCTCAGGGCCCCTATTACTGTGGTGCTGGTGCAGACAAGTCGTTTGGCCGTGACATTTCAGATGCTCATTACAAGGCTTGTCTATATGCTGGAATCAACATCAGTGGAACCAATGGGGAAGTTATGCCTGGCCAGTGGGAATTTCAAGTTGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGGCTGCAAGATACATTCTTGAGAGGATCACTGAACAAGCAGGTGTTGTTCTCACTCTTGATCCAAAACCAATTATGGGTGACTGGAATGGTGCTGGATGCCACACCAATTACAGTACAAAGAGCATGAGGGAAGAAGGAGGCTTTGAAATTATTAAGAAGGCAATTTTGAATCTGTCACTTCGCCACACAGAGCATATTAGTGCCTATGGAGAAGGAAATGAGAGAAGGTTGACAGGAAAGCATGAAACAGCCAGCATTAATCAATTTTCTTGGGGAGTGGCTAATCGCGGTGCCTCAATCCGTGTTGGTCGTGACACTGAGAAGCAAGGAAAAGGTTATCTGGAGGACCGCCGTCCAGCTTCAAACATGGACCCTTACACTGTGACCGCACTGCTGGCAGAAACTACAATCTTGTGGGAGCCAACACTTGAGGCTGAAGCTCTTGCTGCTCAAAAACTAGCATTGAATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004356 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006082 GO:0006520 GO:0006536 GO:0006541 GO:0006807 GO:0006950 GO:0006970 GO:0007568 GO:0008150 GO:0008152 GO:0009064 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016211 GO:0016874 GO:0016879 GO:0016880 GO:0019676 GO:0019740 GO:0019752 GO:0022626 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032502 GO:0032991 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0055035 GO:0071704 GO:1901564 GO:1901605 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Gln-synt_C Gln-synt_N

Protein Analysis

407

Amino Acids

44.94

Weight (kDa)

6.28

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gln-synt_N	PF03951	80 - 132	1.2e-08	Glutamine synthetase, beta-Grasp domain
Gln-synt_C	PF00120	143 - 381	4.4e-14	Glutamine synthetase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35630 AT5G35630 AT5G35630
fragaria_vesca	FvH4_4g14190 FvH4_4g14190
malus_domestica	MD13G1180400.v1.1 MD16G1181300.v1.1
prunus_persica	Prupe.1G148700_v2.0.a1
pyrus_communis	pycom13g15570 pycom16g15210
rosa_chinensis	RchiOBHm_Chr4g0419011
rosa_laevigata	RLG00000007833
rosa_multiflora	Rmu_sc0005646.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362070
rosa_rugosa	Rorug04G0156200 Rorug04G0156300
rosa_samantha	Rh4AG217900 Rh4BG212300 Rh4CG229900 Rh4DG216500
rosa_wichuraiana	Rw4G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	779
Acc36I	ACCTGC	1 cut(s)	779
AccB1I	GGYRCC	2 cut(s)	292, 1040
AccB7I	CCANNNNNTGG	1 cut(s)	482
AccII	CGCG	1 cut(s)	1038
AciI	CCGC	3 cut(s)	1038, 1099, 1137
AclWI	GGATC	4 cut(s)	188, 283, 782, 803
AcoI	YGGCCR	3 cut(s)	539, 607, 691
AcsI	RAATTY	2 cut(s)	130, 701
AcuI	CTGAAG	1 cut(s)	1206
AdeI	CACNNNGTG	1 cut(s)	299
AfaI	GTAC	4 cut(s)	173, 283, 500, 865
AfiI	CCNNNNNNNGG	6 cut(s)	111, 353, 482, 548, 722, 824
AjnI	CCWGG	2 cut(s)	556, 688
AjuI	GAANNNNNNNTTGG	2 cut(s)	693, 725
AluBI	AGCT	6 cut(s)	53, 63, 253, 734, 1109, 1190
AluI	AGCT	6 cut(s)	53, 63, 253, 734, 1109, 1190
AlwI	GGATC	4 cut(s)	188, 283, 782, 803
AoxI	GGCC	5 cut(s)	527, 539, 568, 607, 691
ApaI	GGGCCC	1 cut(s)	572
ApeKI	GCWGC	3 cut(s)	434, 752, 1196
ApoI	RAATTY	2 cut(s)	130, 701
ArsI	GACNNNNNNTTYG	2 cut(s)	587, 619
AseI	ATTAAT	1 cut(s)	1008
AspS9I	GGNCC	8 cut(s)	136, 343, 560, 568, 569, 713, 1096, 1120
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	2 cut(s)	311, 839
AvaII	GGWCC	6 cut(s)	136, 343, 560, 713, 1096, 1120
AxyI	CCTNAGG	1 cut(s)	564
BaeGI	GKGCMC	1 cut(s)	572
BalI	TGGCCA	2 cut(s)	541, 693
BanI	GGYRCC	2 cut(s)	292, 1040
BanII	GRGCYC	1 cut(s)	572
BbsI	GAAGAC	1 cut(s)	309
BbvI	GCAGC	3 cut(s)	421, 739, 1183
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	3 cut(s)	440, 594, 1086
BcgI	CGANNNNNNTGC	2 cut(s)	582, 616
BciT130I	CCWGG	2 cut(s)	558, 690
BcnI	CCSGG	1 cut(s)	297
BfaI	CTAG	3 cut(s)	26, 717, 1208
BfuAI	ACCTGC	1 cut(s)	779
BisI	GCNGC	3 cut(s)	435, 753, 1197
BlsI	GCNGC	3 cut(s)	436, 754, 1198
Bme1390I	CCNGG	3 cut(s)	297, 558, 690
Bme18I	GGWCC	6 cut(s)	136, 343, 560, 713, 1096, 1120
BmgT120I	GGNCC	8 cut(s)	136, 343, 560, 568, 569, 713, 1096, 1120
BmiI	GGNNCC	8 cut(s)	294, 345, 570, 571, 670, 1042, 1122, 1170
BmrFI	CCNGG	3 cut(s)	297, 558, 690
BmsI	GCATC	3 cut(s)	373, 613, 836
BoxI	GACNNNNGTC	1 cut(s)	1101
BpiI	GAAGAC	1 cut(s)	309
BpmI	CTGGAG	2 cut(s)	756, 1112
Bpu10I	CCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	3 cut(s)	312, 788, 1199
BpuMI	CCSGG	1 cut(s)	297
Bsa29I	ATCGAT	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	397, 476
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	6 cut(s)	111, 353, 482, 548, 722, 824
Bse1I	ACTGG	3 cut(s)	542, 694, 836
Bse21I	CCTNAGG	1 cut(s)	564
BseBI	CCWGG	2 cut(s)	558, 690
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	397, 476
BseGI	GGATG	2 cut(s)	241, 851
BseLI	CCNNNNNNNGG	6 cut(s)	111, 353, 482, 548, 722, 824
BseMII	CTCAG	4 cut(s)	240, 452, 578, 1059
BseNI	ACTGG	3 cut(s)	542, 694, 836
BseSI	GKGCMC	1 cut(s)	572
BseXI	GCAGC	3 cut(s)	421, 739, 1183
BsgI	GTGCAG	1 cut(s)	612
Bsh1236I	CGCG	1 cut(s)	1038
BshFI	GGCC	5 cut(s)	529, 541, 570, 609, 693
BshNI	GGYRCC	2 cut(s)	292, 1040
BshVI	ATCGAT	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	285, 297
BslI	CCNNNNNNNGG	6 cut(s)	111, 353, 482, 548, 722, 824
BsnI	GGCC	5 cut(s)	529, 541, 570, 609, 693
Bsp120I	GGGCCC	1 cut(s)	568
Bsp1286I	GDGCHC	1 cut(s)	572
Bsp143I	GATC	6 cut(s)	180, 275, 315, 739, 774, 808
Bsp19I	CCATGG	1 cut(s)	476
BspACI	CCGC	3 cut(s)	1038, 1099, 1137
BspANI	GGCC	5 cut(s)	529, 541, 570, 609, 693
BspCNI	CTCAG	4 cut(s)	241, 451, 577, 1060
BspDI	ATCGAT	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	1038
BspLI	GGNNCC	8 cut(s)	294, 345, 570, 571, 670, 1042, 1122, 1170
BspMI	ACCTGC	1 cut(s)	779
BspPI	GGATC	4 cut(s)	188, 283, 782, 803
BspT107I	GGYRCC	2 cut(s)	292, 1040
BsrI	ACTGG	3 cut(s)	542, 694, 836
BssECI	CCNNGG	2 cut(s)	397, 476
BssMI	GATC	6 cut(s)	180, 275, 315, 739, 774, 808
BssT1I	CCWWGG	2 cut(s)	397, 476
Bst2UI	CCWGG	2 cut(s)	558, 690
Bst4CI	ACNGT	4 cut(s)	308, 581, 863, 1132
BstC8I	GCNNGC	3 cut(s)	404, 1003, 1146
BstDEI	CTNAG	5 cut(s)	66, 249, 438, 564, 1068
BstDSI	CCRYGG	1 cut(s)	476
BstF5I	GGATG	2 cut(s)	241, 851
BstFNI	CGCG	1 cut(s)	1038
BstKTI	GATC	6 cut(s)	183, 278, 318, 742, 777, 811
BstMBI	GATC	6 cut(s)	180, 275, 315, 739, 774, 808
BstMWI	GCNNNNNNNGC	2 cut(s)	1145, 1196
BstNI	CCWGG	2 cut(s)	558, 690
BstPAI	GACNNNNGTC	1 cut(s)	1101
BstSCI	CCNGG	3 cut(s)	295, 556, 688
BstSLI	GKGCMC	1 cut(s)	572
BstUI	CGCG	1 cut(s)	1038
BstV1I	GCAGC	3 cut(s)	421, 739, 1183
BstV2I	GAAGAC	1 cut(s)	309
Bsu15I	ATCGAT	1 cut(s)	198
Bsu36I	CCTNAGG	1 cut(s)	564
BsuRI	GGCC	5 cut(s)	529, 541, 570, 609, 693
BsuTUI	ATCGAT	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	476
BtsCI	GGATG	2 cut(s)	241, 851
BtsI	GCAGTG	1 cut(s)	1139
BtsIMutI	CAGTG	7 cut(s)	313, 670, 701, 777, 1065, 1128, 1139
BveI	ACCTGC	1 cut(s)	779
Cac8I	GCNNGC	3 cut(s)	404, 1003, 1146
Cfr13I	GGNCC	8 cut(s)	136, 343, 560, 568, 569, 713, 1096, 1120
ClaI	ATCGAT	1 cut(s)	198
Csp6I	GTAC	4 cut(s)	172, 282, 499, 864
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviAII	CATG	4 cut(s)	477, 874, 992, 1117
CviQI	GTAC	4 cut(s)	172, 282, 499, 864
DdeI	CTNAG	5 cut(s)	66, 249, 438, 564, 1068
DpnI	GATC	6 cut(s)	182, 277, 317, 741, 776, 810
DpnII	GATC	6 cut(s)	180, 275, 315, 739, 774, 808
DraIII	CACNNNGTG	1 cut(s)	299
EaeI	YGGCCR	3 cut(s)	539, 607, 691
Eco130I	CCWWGG	2 cut(s)	397, 476
Eco24I	GRGCYC	1 cut(s)	572
Eco32I	GATATC	1 cut(s)	225
Eco47I	GGWCC	6 cut(s)	136, 343, 560, 713, 1096, 1120
Eco57I	CTGAAG	1 cut(s)	1206
Eco81I	CCTNAGG	1 cut(s)	564
EcoO109I	RGGNCCY	3 cut(s)	343, 568, 569
EcoRII	CCWGG	2 cut(s)	556, 688
EcoRV	GATATC	1 cut(s)	225
EcoT14I	CCWWGG	2 cut(s)	397, 476
EcoT22I	ATGCAT	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	572
ErhI	CCWWGG	2 cut(s)	397, 476
FaeI	CATG	4 cut(s)	480, 877, 995, 1120
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FatI	CATG	4 cut(s)	476, 873, 991, 1116
Fnu4HI	GCNGC	3 cut(s)	435, 753, 1197
FokI	GGATG	2 cut(s)	228, 858
FriOI	GRGCYC	1 cut(s)	572
Fsp4HI	GCNGC	3 cut(s)	435, 753, 1197
FspBI	CTAG	3 cut(s)	26, 717, 1208
GluI	GCNGC	3 cut(s)	435, 753, 1197
GsuI	CTGGAG	2 cut(s)	756, 1112
HaeIII	GGCC	5 cut(s)	529, 541, 570, 609, 693
HapII	CCGG	2 cut(s)	285, 297
Hin1II	CATG	4 cut(s)	480, 877, 995, 1120
HincII	GTYRAC	1 cut(s)	981
HindII	GTYRAC	1 cut(s)	981
HinfI	GANTC	2 cut(s)	654, 919
HpaII	CCGG	2 cut(s)	285, 297
HphI	GGTGA	2 cut(s)	311, 839
Hpy166II	GTNNAC	3 cut(s)	125, 501, 981
Hpy188I	TCNGA	5 cut(s)	185, 250, 548, 622, 1223
Hpy188III	TCNNGA	4 cut(s)	767, 806, 1061, 1091
Hpy8I	GTNNAC	3 cut(s)	125, 501, 981
HpyAV	CCTTC	5 cut(s)	451, 878, 901, 956, 969
HpyCH4III	ACNGT	4 cut(s)	308, 581, 863, 1132
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	3 cut(s)	386, 593, 755
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1145, 1196
HpyF3I	CTNAG	5 cut(s)	66, 249, 438, 564, 1068
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	4 cut(s)	480, 877, 995, 1120
Kzo9I	GATC	6 cut(s)	180, 275, 315, 739, 774, 808
LmnI	GCTCC	2 cut(s)	50, 1168
Lsp1109I	GCAGC	3 cut(s)	421, 739, 1183
LweI	GCATC	3 cut(s)	373, 613, 836
MaeI	CTAG	3 cut(s)	26, 717, 1208
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	5 cut(s)	611, 827, 924, 1061, 1132
MalI	GATC	6 cut(s)	182, 277, 317, 741, 776, 810
MboI	GATC	6 cut(s)	180, 275, 315, 739, 774, 808
MboII	GAAGA	3 cut(s)	107, 314, 893
MhlI	GDGCHC	1 cut(s)	572
MlsI	TGGCCA	2 cut(s)	541, 693
MluNI	TGGCCA	2 cut(s)	541, 693
MmeI	TCCRAC	2 cut(s)	526, 540
Mox20I	TGGCCA	2 cut(s)	541, 693
Mph1103I	ATGCAT	1 cut(s)	388
MscI	TGGCCA	2 cut(s)	541, 693
MseI	TTAA	3 cut(s)	57, 903, 1008
MslI	CAYNNNNRTG	1 cut(s)	948
Msp20I	TGGCCA	2 cut(s)	541, 693
MspI	CCGG	2 cut(s)	285, 297
MspR9I	CCNGG	3 cut(s)	297, 558, 690
MvaI	CCWGG	2 cut(s)	558, 690
MvnI	CGCG	1 cut(s)	1038
MwoI	GCNNNNNNNGC	2 cut(s)	1145, 1196
NciI	CCSGG	1 cut(s)	297
NcoI	CCATGG	1 cut(s)	476
NdeII	GATC	6 cut(s)	180, 275, 315, 739, 774, 808
NlaIII	CATG	4 cut(s)	480, 877, 995, 1120
NlaIV	GGNNCC	8 cut(s)	294, 345, 570, 571, 670, 1042, 1122, 1170
NmeAIII	GCCGAG	1 cut(s)	193
NmuCI	GTSAC	5 cut(s)	611, 827, 924, 1061, 1132
NsiI	ATGCAT	1 cut(s)	388
PaqCI	CACCTGC	1 cut(s)	779
PfeI	GAWTC	2 cut(s)	654, 919
PflMI	CCANNNNNTGG	1 cut(s)	482
PkrI	GCNGC	3 cut(s)	436, 754, 1198
PpuMI	RGGWCCY	1 cut(s)	343
PshAI	GACNNNNGTC	1 cut(s)	1101
PshBI	ATTAAT	1 cut(s)	1008
Psp5II	RGGWCCY	1 cut(s)	343
Psp6I	CCWGG	2 cut(s)	556, 688
PspGI	CCWGG	2 cut(s)	556, 688
PspN4I	GGNNCC	8 cut(s)	294, 345, 570, 571, 670, 1042, 1122, 1170
PspOMI	GGGCCC	1 cut(s)	568
PspPI	GGNCC	8 cut(s)	136, 343, 560, 568, 569, 713, 1096, 1120
PspPPI	RGGWCCY	1 cut(s)	343
PsrI	GAACNNNNNNTAC	2 cut(s)	456, 488
RsaI	GTAC	4 cut(s)	173, 283, 500, 865
RsaNI	GTAC	4 cut(s)	172, 282, 499, 864
RseI	CAYNNNNRTG	1 cut(s)	948
SaqAI	TTAA	3 cut(s)	57, 903, 1008
SatI	GCNGC	3 cut(s)	435, 753, 1197
Sau3AI	GATC	6 cut(s)	180, 275, 315, 739, 774, 808
Sau96I	GGNCC	8 cut(s)	136, 343, 560, 568, 569, 713, 1096, 1120
ScrFI	CCNGG	3 cut(s)	297, 558, 690
SduI	GDGCHC	1 cut(s)	572
SfaNI	GCATC	3 cut(s)	373, 613, 836
SinI	GGWCC	6 cut(s)	136, 343, 560, 713, 1096, 1120
SmiMI	CAYNNNNRTG	1 cut(s)	948
SmlI	CTYRAG	3 cut(s)	327, 767, 1178
SmoI	CTYRAG	3 cut(s)	327, 767, 1178
SsiI	CCGC	3 cut(s)	1038, 1099, 1137
SspMI	CTAG	3 cut(s)	26, 717, 1208
StyD4I	CCNGG	3 cut(s)	295, 556, 688
StyI	CCWWGG	2 cut(s)	397, 476
TaaI	ACNGT	4 cut(s)	308, 581, 863, 1132
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	1 cut(s)	198
TatI	WGTACW	3 cut(s)	171, 498, 863
TfiI	GAWTC	2 cut(s)	654, 919
Tru1I	TTAA	3 cut(s)	57, 903, 1008
Tru9I	TTAA	3 cut(s)	57, 903, 1008
TscAI	CASTG	7 cut(s)	313, 670, 701, 784, 1072, 1135, 1146
TseFI	GTSAC	5 cut(s)	611, 827, 924, 1061, 1132
TseI	GCWGC	3 cut(s)	434, 752, 1196
Tsp45I	GTSAC	5 cut(s)	611, 827, 924, 1061, 1132
TspDTI	ATGAA	3 cut(s)	108, 483, 1008
TspGWI	ACGGA	3 cut(s)	167, 234, 1040
TspRI	CASTG	7 cut(s)	313, 670, 701, 784, 1072, 1135, 1146
Van91I	CCANNNNNTGG	1 cut(s)	482
VpaK11BI	GGWCC	6 cut(s)	136, 343, 560, 713, 1096, 1120
VspI	ATTAAT	1 cut(s)	1008
XapI	RAATTY	2 cut(s)	130, 701
XspI	CTAG	3 cut(s)	26, 717, 1208
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.