FvH4_4g14190

glutamine synthetase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
17783899 .. 17791453
7555 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14190.t1

Sequence Viewer

Length: 1296 bp
ATGGCACAGATTTTGGCACCAACTTCACAATGGCAGATGAGAATTACAAAGAGCTCAATCCCTTCTAGTCCTATGACAGGAAAGATGTGGAGTTCTCTAGTGTTGAAACAGAACAAGAAAGGAGCTATTAAAAGCTCTAAGTTCAGAGTTTTTGCGTCCAAGTATGAAGACTATACCATAAACAGGGTCGAGGATTTACTAAATTTGGACATTACTCCATACACGGACAAGATTATTGCCGAGTACATTTGGATCGGAGGGTCTGGTATCGATGTGCGTAGCAAGTCAAGGACTATATCAAAGCCTGTTGAACATCCGTCTGAGCTTCCAAAGTGGAACTATGATGGATCAAGTACCGGACAAGCACCCGGTGATGACAGTGAAGTGATCTTATACCCTCAAGCGATATTCAAGGACCCTTTTCGTGGTGGCAACAATATATTGGTAATTTGTGACTCATACACGCCCCAAGGCGAGCCTATCCCAACAAACAAACGGCACAGGGCCGCTCAGGTTTTTAGCAACCAGAAGGTTATAGATGAAGTTCCATGGTATGGGATAGAGCAAGAGTACACATTACTTCAATCTAGTGTGAAATGGCCTTTAGGTTGGCCAGTCGGAGGTTATCCTGGTCCTCAGGGTCCCTATTACTGTGGTGCTGGTGCAGACAAGTCGTTTGGCCGTGACATTTCAGATGCTCATTACAAGGCTTGCCTATATGCTGGAATTAACATCAGTGGAACCAATGGGGAAGTTATGCCTGGCCAGTGGGAGTATCAAGTTGGTCCTAGCGTGGGAATTGAAGCTGGAGATCATATCTGGGCATCGAGATACATTCTTGAGAGGATCACTGAACAAGCGGGTGTTGTTCTCAGTCTTGATCCAAAACCAATAGAGGGTGACTGGAATGGTGCTGGATGCCACACCAATTATAGTACAAAGAGCATGAGGGAAGAAGGAGGCTTTGAAGTTATTAAGAAGGCAATTTTGAATCTGTCTCTTCGCCACAAAGAGCATATTAGTGCCTATGGAGAAGGAAATGAGAGAAGATTGACAGGACTGCATGAAACACAGAACATTAATAAATTCTCTTGGGGAGTGGCTAATCGCGGTGCCTCAATCCGTGTTGGTCGTGACACTGAGAAAGAAGGAAAAGGTTATCTGGAGGACCGCCGTCCAGCTTCAAACATGGACCCTTACACTGTGACCGCACTGCTGGCAGAGACTACAATTTTGTGGGAGCCAACACTCGAGGCTGAAGCTCTTGCTGCTCAAAAAGTGGCATTGAATGTCTGA

Protein Analysis

432

Amino Acids

47.78

Weight (kDa)

6.29

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gln-synt_N PF03951 104 - 156 4.8e-08 Glutamine synthetase, beta-Grasp domain
Gln-synt_C PF00120 171 - 314 1.1e-09 Glutamine synthetase, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009789)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 16, 1112
AccB7I CCANNNNNTGG 1 cut(s) 554
AccBSI CCGCTC 1 cut(s) 509
AccII CGCG 1 cut(s) 1110
AciI CCGC 5 cut(s) 507, 860, 1110, 1171, 1209
AclWI GGATC 4 cut(s) 260, 355, 854, 875
AcoI YGGCCR 3 cut(s) 611, 679, 763
AcsI RAATTY 2 cut(s) 202, 1085
AcuI CTGAAG 1 cut(s) 1278
AdeI CACNNNGTG 1 cut(s) 371
AfaI GTAC 4 cut(s) 245, 355, 572, 937
AfiI CCNNNNNNNGG 7 cut(s) 77, 183, 425, 554, 620, 794, 896
AgsI TTSAA 9 cut(s) 106, 311, 412, 584, 803, 968, 991, 1185, 1288
AjnI CCWGG 2 cut(s) 628, 760
AluBI AGCT 7 cut(s) 54, 125, 135, 325, 806, 1181, 1262
AluI AGCT 7 cut(s) 54, 125, 135, 325, 806, 1181, 1262
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 2 cut(s) 1002, 1217
AlwI GGATC 4 cut(s) 260, 355, 854, 875
Ama87I CYCGRG 1 cut(s) 1250
AoxI GGCC 5 cut(s) 504, 599, 611, 679, 763
ApeKI GCWGC 1 cut(s) 1268
ApoI RAATTY 2 cut(s) 202, 1085
ArsI GACNNNNNNTTYG 4 cut(s) 659, 691, 1216, 1248
AseI ATTAAT 1 cut(s) 1080
AspS9I GGNCC 7 cut(s) 415, 504, 632, 641, 785, 1168, 1192
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 2 cut(s) 383, 911
AvaI CYCGRG 1 cut(s) 1250
AvaII GGWCC 6 cut(s) 415, 632, 641, 785, 1168, 1192
AxyI CCTNAGG 1 cut(s) 636
BalI TGGCCA 2 cut(s) 613, 765
BanI GGYRCC 2 cut(s) 16, 1112
BanII GRGCYC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 1255
BccI CCATC 1 cut(s) 338
BceAI ACGGC 3 cut(s) 512, 666, 1158
BcgI CGANNNNNNTGC 2 cut(s) 654, 688
BciT130I CCWGG 2 cut(s) 630, 762
BcnI CCSGG 1 cut(s) 369
BcoDI GTCTC 2 cut(s) 1002, 1217
BfaI CTAG 4 cut(s) 66, 98, 588, 789
BisI GCNGC 2 cut(s) 507, 1269
BlsI GCNGC 2 cut(s) 508, 1270
Bme1390I CCNGG 3 cut(s) 369, 630, 762
Bme18I GGWCC 6 cut(s) 415, 632, 641, 785, 1168, 1192
BmeT110I CYCGRG 1 cut(s) 1250
BmgT120I GGNCC 7 cut(s) 415, 504, 632, 641, 785, 1168, 1192
BmiI GGNNCC 8 cut(s) 18, 417, 642, 643, 742, 1114, 1194, 1242
BmrFI CCNGG 3 cut(s) 369, 630, 762
BmsI GCATC 3 cut(s) 685, 833, 908
BoxI GACNNNNGTC 1 cut(s) 1173
BpiI GAAGAC 1 cut(s) 174
BpmI CTGGAG 2 cut(s) 828, 1184
Bpu10I CCTNAGC 1 cut(s) 510
BpuEI CTTGAG 2 cut(s) 384, 860
BpuMI CCSGG 1 cut(s) 369
Bsa29I ATCGAT 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 469, 548
BsaWI WCCGGW 1 cut(s) 356
Bsc4I CCNNNNNNNGG 7 cut(s) 77, 183, 425, 554, 620, 794, 896
Bse1I ACTGG 3 cut(s) 614, 766, 908
Bse21I CCTNAGG 1 cut(s) 636
BseBI CCWGG 2 cut(s) 630, 762
BseCI ATCGAT 1 cut(s) 270
BseDI CCNNGG 2 cut(s) 469, 548
BseGI GGATG 2 cut(s) 313, 923
BseLI CCNNNNNNNGG 7 cut(s) 77, 183, 425, 554, 620, 794, 896
BseMII CTCAG 5 cut(s) 312, 524, 650, 886, 1131
BseNI ACTGG 3 cut(s) 614, 766, 908
BseXI GCAGC 1 cut(s) 1255
BsgI GTGCAG 1 cut(s) 684
Bsh1236I CGCG 1 cut(s) 1110
BshFI GGCC 5 cut(s) 506, 601, 613, 681, 765
BshNI GGYRCC 2 cut(s) 16, 1112
BshVI ATCGAT 1 cut(s) 270
BsiHKAI GWGCWC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 1250
BsiSI CCGG 2 cut(s) 357, 369
BslFI GGGAC 1 cut(s) 627
BslI CCNNNNNNNGG 7 cut(s) 77, 183, 425, 554, 620, 794, 896
BsmAI GTCTC 2 cut(s) 1002, 1217
BsmFI GGGAC 1 cut(s) 627
BsnI GGCC 5 cut(s) 506, 601, 613, 681, 765
BsoBI CYCGRG 1 cut(s) 1250
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 6 cut(s) 252, 347, 387, 811, 846, 880
Bsp19I CCATGG 1 cut(s) 548
BspACI CCGC 5 cut(s) 507, 860, 1110, 1171, 1209
BspANI GGCC 5 cut(s) 506, 601, 613, 681, 765
BspCNI CTCAG 5 cut(s) 313, 523, 649, 885, 1132
BspDI ATCGAT 1 cut(s) 270
BspFNI CGCG 1 cut(s) 1110
BspLI GGNNCC 8 cut(s) 18, 417, 642, 643, 742, 1114, 1194, 1242
BspPI GGATC 4 cut(s) 260, 355, 854, 875
BspT107I GGYRCC 2 cut(s) 16, 1112
BsrBI CCGCTC 1 cut(s) 509
BsrI ACTGG 3 cut(s) 614, 766, 908
BssECI CCNNGG 2 cut(s) 469, 548
BssMI GATC 6 cut(s) 252, 347, 387, 811, 846, 880
BssT1I CCWWGG 2 cut(s) 469, 548
Bst2UI CCWGG 2 cut(s) 630, 762
Bst4CI ACNGT 3 cut(s) 380, 653, 1204
Bst6I CTCTTC 1 cut(s) 1005
BstC8I GCNNGC 3 cut(s) 476, 712, 1218
BstDEI CTNAG 6 cut(s) 138, 321, 510, 636, 872, 1140
BstDSI CCRYGG 1 cut(s) 548
BstENI CCTNNNNNAGG 1 cut(s) 75
BstF5I GGATG 2 cut(s) 313, 923
BstFNI CGCG 1 cut(s) 1110
BstKTI GATC 6 cut(s) 255, 350, 390, 814, 849, 883
BstMAI GTCTC 2 cut(s) 1002, 1217
BstMBI GATC 6 cut(s) 252, 347, 387, 811, 846, 880
BstMWI GCNNNNNNNGC 2 cut(s) 1217, 1268
BstNI CCWGG 2 cut(s) 630, 762
BstPAI GACNNNNGTC 1 cut(s) 1173
BstSCI CCNGG 3 cut(s) 367, 628, 760
BstUI CGCG 1 cut(s) 1110
BstV1I GCAGC 1 cut(s) 1255
BstV2I GAAGAC 1 cut(s) 174
Bsu15I ATCGAT 1 cut(s) 270
Bsu36I CCTNAGG 1 cut(s) 636
BsuRI GGCC 5 cut(s) 506, 601, 613, 681, 765
BsuTUI ATCGAT 1 cut(s) 270
BtgI CCRYGG 1 cut(s) 548
BtsCI GGATG 2 cut(s) 313, 923
BtsI GCAGTG 1 cut(s) 1211
BtsIMutI CAGTG 7 cut(s) 385, 742, 773, 849, 1137, 1200, 1211
Cac8I GCNNGC 3 cut(s) 476, 712, 1218
Cfr13I GGNCC 7 cut(s) 415, 504, 632, 641, 785, 1168, 1192
ClaI ATCGAT 1 cut(s) 270
CseI GACGC 1 cut(s) 144
Csp6I GTAC 4 cut(s) 244, 354, 571, 936
CviAII CATG 4 cut(s) 549, 946, 1064, 1189
CviQI GTAC 4 cut(s) 244, 354, 571, 936
DdeI CTNAG 6 cut(s) 138, 321, 510, 636, 872, 1140
DpnI GATC 6 cut(s) 254, 349, 389, 813, 848, 882
DpnII GATC 6 cut(s) 252, 347, 387, 811, 846, 880
DraIII CACNNNGTG 1 cut(s) 371
EaeI YGGCCR 3 cut(s) 611, 679, 763
Eam1104I CTCTTC 1 cut(s) 1005
EarI CTCTTC 1 cut(s) 1005
Ecl136II GAGCTC 1 cut(s) 54
Eco130I CCWWGG 2 cut(s) 469, 548
Eco24I GRGCYC 1 cut(s) 56
Eco47I GGWCC 6 cut(s) 415, 632, 641, 785, 1168, 1192
Eco53kI GAGCTC 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 1278
Eco81I CCTNAGG 1 cut(s) 636
Eco88I CYCGRG 1 cut(s) 1250
EcoICRI GAGCTC 1 cut(s) 54
EcoNI CCTNNNNNAGG 1 cut(s) 75
EcoO109I RGGNCCY 2 cut(s) 415, 641
EcoRII CCWGG 2 cut(s) 628, 760
EcoT14I CCWWGG 2 cut(s) 469, 548
EcoT38I GRGCYC 1 cut(s) 56
ErhI CCWWGG 2 cut(s) 469, 548
FaeI CATG 4 cut(s) 552, 949, 1067, 1192
FaqI GGGAC 1 cut(s) 627
FatI CATG 4 cut(s) 548, 945, 1063, 1188
FauI CCCGC 1 cut(s) 853
Fnu4HI GCNGC 2 cut(s) 507, 1269
FokI GGATG 2 cut(s) 300, 930
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 2 cut(s) 507, 1269
FspBI CTAG 4 cut(s) 66, 98, 588, 789
GluI GCNGC 2 cut(s) 507, 1269
GsuI CTGGAG 2 cut(s) 828, 1184
HaeIII GGCC 5 cut(s) 506, 601, 613, 681, 765
HapII CCGG 2 cut(s) 357, 369
HgaI GACGC 1 cut(s) 144
Hin1II CATG 4 cut(s) 552, 949, 1067, 1192
HinfI GANTC 2 cut(s) 455, 991
HpaII CCGG 2 cut(s) 357, 369
HphI GGTGA 2 cut(s) 383, 911
Hpy166II GTNNAC 1 cut(s) 573
Hpy188I TCNGA 6 cut(s) 146, 257, 322, 620, 694, 1295
Hpy188III TCNNGA 5 cut(s) 828, 839, 878, 1133, 1163
Hpy8I GTNNAC 1 cut(s) 573
HpyAV CCTTC 6 cut(s) 72, 523, 950, 973, 1028, 1142
HpyCH4III ACNGT 3 cut(s) 380, 653, 1204
HpyCH4V TGCA 2 cut(s) 665, 1063
HpyF10VI GCNNNNNNNGC 2 cut(s) 1217, 1268
HpyF3I CTNAG 6 cut(s) 138, 321, 510, 636, 872, 1140
Hsp92II CATG 4 cut(s) 552, 949, 1067, 1192
KflI GGGWCCC 1 cut(s) 641
Kzo9I GATC 6 cut(s) 252, 347, 387, 811, 846, 880
LmnI GCTCC 2 cut(s) 122, 1240
Lsp1109I GCAGC 1 cut(s) 1255
LweI GCATC 3 cut(s) 685, 833, 908
MaeI CTAG 4 cut(s) 66, 98, 588, 789
MaeIII GTNAC 5 cut(s) 452, 683, 899, 1133, 1204
MalI GATC 6 cut(s) 254, 349, 389, 813, 848, 882
MbiI CCGCTC 1 cut(s) 509
MboI GATC 6 cut(s) 252, 347, 387, 811, 846, 880
MboII GAAGA 4 cut(s) 179, 965, 992, 1059
MhlI GDGCHC 1 cut(s) 56
MlsI TGGCCA 2 cut(s) 613, 765
MluCI AATT 9 cut(s) 42, 202, 447, 726, 798, 928, 984, 1085, 1230
MluNI TGGCCA 2 cut(s) 613, 765
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 598
Mox20I TGGCCA 2 cut(s) 613, 765
MscI TGGCCA 2 cut(s) 613, 765
MseI TTAA 4 cut(s) 129, 729, 975, 1080
MslI CAYNNNNRTG 1 cut(s) 1020
Msp20I TGGCCA 2 cut(s) 613, 765
MspI CCGG 2 cut(s) 357, 369
MspR9I CCNGG 3 cut(s) 369, 630, 762
MvaI CCWGG 2 cut(s) 630, 762
MvnI CGCG 1 cut(s) 1110
MwoI GCNNNNNNNGC 2 cut(s) 1217, 1268
NciI CCSGG 1 cut(s) 369
NcoI CCATGG 1 cut(s) 548
NdeII GATC 6 cut(s) 252, 347, 387, 811, 846, 880
NlaIII CATG 4 cut(s) 552, 949, 1067, 1192
NlaIV GGNNCC 8 cut(s) 18, 417, 642, 643, 742, 1114, 1194, 1242
NmeAIII GCCGAG 1 cut(s) 265
NmuCI GTSAC 5 cut(s) 452, 683, 899, 1133, 1204
PaeR7I CTCGAG 1 cut(s) 1250
PfeI GAWTC 1 cut(s) 991
PflMI CCANNNNNTGG 1 cut(s) 554
PkrI GCNGC 2 cut(s) 508, 1270
PleI GAGTC 1 cut(s) 449
PpsI GAGTC 1 cut(s) 449
PpuMI RGGWCCY 2 cut(s) 415, 641
PshAI GACNNNNGTC 1 cut(s) 1173
PshBI ATTAAT 1 cut(s) 1080
Psp124BI GAGCTC 1 cut(s) 56
Psp5II RGGWCCY 2 cut(s) 415, 641
Psp6I CCWGG 2 cut(s) 628, 760
PspGI CCWGG 2 cut(s) 628, 760
PspN4I GGNNCC 8 cut(s) 18, 417, 642, 643, 742, 1114, 1194, 1242
PspPI GGNCC 7 cut(s) 415, 504, 632, 641, 785, 1168, 1192
PspPPI RGGWCCY 2 cut(s) 415, 641
PspXI VCTCGAGB 1 cut(s) 1250
RsaI GTAC 4 cut(s) 245, 355, 572, 937
RsaNI GTAC 4 cut(s) 244, 354, 571, 936
RseI CAYNNNNRTG 1 cut(s) 1020
SacI GAGCTC 1 cut(s) 56
SaqAI TTAA 4 cut(s) 129, 729, 975, 1080
SatI GCNGC 2 cut(s) 507, 1269
Sau3AI GATC 6 cut(s) 252, 347, 387, 811, 846, 880
Sau96I GGNCC 7 cut(s) 415, 504, 632, 641, 785, 1168, 1192
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 3 cut(s) 369, 630, 762
SduI GDGCHC 1 cut(s) 56
SfaNI GCATC 3 cut(s) 685, 833, 908
Sfr274I CTCGAG 1 cut(s) 1250
SinI GGWCC 6 cut(s) 415, 632, 641, 785, 1168, 1192
SlaI CTCGAG 1 cut(s) 1250
SmiMI CAYNNNNRTG 1 cut(s) 1020
SmlI CTYRAG 3 cut(s) 399, 839, 1250
SmoI CTYRAG 3 cut(s) 399, 839, 1250
Sse9I AATT 9 cut(s) 42, 202, 447, 726, 798, 928, 984, 1085, 1230
SsiI CCGC 5 cut(s) 507, 860, 1110, 1171, 1209
SspMI CTAG 4 cut(s) 66, 98, 588, 789
SstI GAGCTC 1 cut(s) 56
StyD4I CCNGG 3 cut(s) 367, 628, 760
StyI CCWWGG 2 cut(s) 469, 548
TaaI ACNGT 3 cut(s) 380, 653, 1204
TaqI TCGA 4 cut(s) 189, 270, 827, 1251
TasI AATT 9 cut(s) 42, 202, 447, 726, 798, 928, 984, 1085, 1230
TatI WGTACW 3 cut(s) 243, 570, 935
TauI GCSGC 1 cut(s) 509
TfiI GAWTC 1 cut(s) 991
Tru1I TTAA 4 cut(s) 129, 729, 975, 1080
Tru9I TTAA 4 cut(s) 129, 729, 975, 1080
TscAI CASTG 7 cut(s) 385, 742, 773, 856, 1144, 1207, 1218
TseFI GTSAC 5 cut(s) 452, 683, 899, 1133, 1204
TseI GCWGC 1 cut(s) 1268
Tsp45I GTSAC 5 cut(s) 452, 683, 899, 1133, 1204
TspDTI ATGAA 3 cut(s) 180, 555, 1080
TspGWI ACGGA 3 cut(s) 239, 306, 1112
TspRI CASTG 7 cut(s) 385, 742, 773, 856, 1144, 1207, 1218
Van91I CCANNNNNTGG 1 cut(s) 554
VpaK11BI GGWCC 6 cut(s) 415, 632, 641, 785, 1168, 1192
VspI ATTAAT 1 cut(s) 1080
XagI CCTNNNNNAGG 1 cut(s) 75
XapI RAATTY 2 cut(s) 202, 1085
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XhoI CTCGAG 1 cut(s) 1250
XspI CTAG 4 cut(s) 66, 98, 588, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.