Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009789

Physical Location & Seq

Genomic Coordinates Reverse (-)

27311832 .. 27313075

Gene Structure 1244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0156200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGATAGGCATGGTGATGGTTCAATTGTTGAAGGAGAAAGGTGGTCTTGTTCTTCTTCTGTTGGTTTAAAATCAGGATACCTAAAAAGTGTTGAAGTCGAAATCACCTGGAACCCGCAGTCGGTGCCTTTTTTCTTGAAGAGGGTTCTGATGGAGGATTTGGGTGCCCAACACCTCATAAATCACAAGTCATTGTTGGAGAATGCAGTACATGCGGTGCTGTTGGACTCGAGTTTTGTCCGAATATACTCCGATTCGGTTCCCGGTGTTCACTTTACGTCCCGTTTTTATACTTTGCCTGAAATACTGCAAAATCTGGGAGGTAGTAGCAGCACCGGCAGCAGCTGTAGTAATACGATTATTGAAAGGATAGGGCTGAGGTTTCAGAGCTTAGGGCACTTCGTGAATGTTTATGGGTATTTAATCGGTGGCGATTCTGTATACCGGGTAAGCTTGGAGGCGCACAAGGTTGCATCCATTATTGAATTCGTTTGGGCAAGCAGAATAAACGTGAATGATATTGTCAAAGTTGGATTACTTGAGATGCAAGAAACCAAAATTTTTGATTTTTGGAAGACTATTAAAGATGGAATTGCGTTGCCTTTGATGATTGATCTTTGCGCAAAGGCGGGGTTGCCGTCTCCGCCCTGCCTTATGAGTCTTCCTCCAGAGCTCAAGGCCAAGATTTTGAAGTCACTGTGTGGTGTTGATATTGCAAAAGTTGAATGTACCTGCAGGGAGCTGCGACAATTAGGCAATGACGATGAGTTGTGGTGGAACAAGTTAGCGTATGAGTTTCCGGGGTCGTGGAATGAGGATGATAATGATGATATGGTAGGGGGAACGAAAACGTGGAAGACGGTTTATGGTGATAAATGGAGGCAGCAAAAATATCCCTGGAATCCAAGGAATGAGAGGTCTTTCTCACACGCCAATTGGCCAAATTCTGTGCAAGCACTGGAACTCCGTCCTCTTCCTCCTCATTTTTTTTCCTATCAATATACTGCTTCAAATTTCCAACAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004356 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006082 GO:0006520 GO:0006536 GO:0006541 GO:0006807 GO:0006950 GO:0006970 GO:0007568 GO:0008150 GO:0008152 GO:0009064 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016211 GO:0016874 GO:0016879 GO:0016880 GO:0019676 GO:0019740 GO:0019752 GO:0022626 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032502 GO:0032991 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0055035 GO:0071704 GO:1901564 GO:1901605 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Gln-synt_C Gln-synt_N

Protein Analysis

342

Amino Acids

38.73

Weight (kDa)

6.32

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	220 - 258	7e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35630 AT5G35630 AT5G35630
fragaria_vesca	FvH4_4g14190 FvH4_4g14190
malus_domestica	MD13G1180400.v1.1 MD16G1181300.v1.1
prunus_persica	Prupe.1G148700_v2.0.a1
pyrus_communis	pycom13g15570 pycom16g15210
rosa_chinensis	RchiOBHm_Chr4g0419011
rosa_laevigata	RLG00000007833
rosa_multiflora	Rmu_sc0005646.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362070
rosa_rugosa	Rorug04G0156200 Rorug04G0156300
rosa_samantha	Rh4AG217900 Rh4BG212300 Rh4CG229900 Rh4DG216500
rosa_wichuraiana	Rw4G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	622
Acc36I	ACCTGC	1 cut(s)	740
AccB1I	GGYRCC	2 cut(s)	124, 164
AccI	GTMKAC	1 cut(s)	441
AciI	CCGC	4 cut(s)	116, 215, 629, 644
AcoI	YGGCCR	1 cut(s)	938
AcsI	RAATTY	4 cut(s)	485, 558, 943, 1012
AdeI	CACNNNGTG	2 cut(s)	403, 701
AfaI	GTAC	2 cut(s)	210, 730
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	9 cut(s)	24, 32, 95, 139, 365, 485, 691, 725, 1011
AjnI	CCWGG	2 cut(s)	107, 896
AluBI	AGCT	5 cut(s)	345, 390, 453, 673, 742
AluI	AGCT	5 cut(s)	345, 390, 453, 673, 742
Alw21I	GWGCWC	1 cut(s)	675
Alw26I	GTCTC	1 cut(s)	645
AlwNI	CAGNNNCTG	1 cut(s)	345
Ama87I	CYCGRG	1 cut(s)	229
AoxI	GGCC	2 cut(s)	678, 938
ApeKI	GCWGC	5 cut(s)	330, 339, 342, 742, 883
ApoI	RAATTY	4 cut(s)	485, 558, 943, 1012
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspLEI	GCGC	2 cut(s)	463, 623
AsuC2I	CCSGG	3 cut(s)	264, 446, 801
AsuHPI	GGTGA	3 cut(s)	26, 97, 881
AvaI	CYCGRG	1 cut(s)	229
BaeGI	GKGCMC	2 cut(s)	169, 399
BalI	TGGCCA	1 cut(s)	940
BanI	GGYRCC	2 cut(s)	124, 164
BanII	GRGCYC	1 cut(s)	675
BbsI	GAAGAC	3 cut(s)	581, 653, 863
Bbv12I	GWGCWC	1 cut(s)	675
BbvCI	CCTCAGC	1 cut(s)	377
BbvI	GCAGC	5 cut(s)	342, 351, 354, 729, 895
BccI	CCATC	3 cut(s)	11, 145, 581
BceAI	ACGGC	1 cut(s)	622
BciT130I	CCWGG	2 cut(s)	109, 898
BciVI	GTATCC	1 cut(s)	71
BcnI	CCSGG	3 cut(s)	264, 446, 801
BcoDI	GTCTC	1 cut(s)	645
BfmI	CTRYAG	2 cut(s)	346, 733
BfuAI	ACCTGC	1 cut(s)	740
BfuI	GTATCC	1 cut(s)	71
BisI	GCNGC	5 cut(s)	331, 340, 343, 743, 884
BlsI	GCNGC	5 cut(s)	332, 341, 344, 744, 885
Bme1390I	CCNGG	5 cut(s)	109, 264, 446, 801, 898
BmeT110I	CYCGRG	1 cut(s)	229
BmiI	GGNNCC	4 cut(s)	113, 126, 166, 261
BmrFI	CCNGG	5 cut(s)	109, 264, 446, 801, 898
BmsI	GCATC	2 cut(s)	482, 534
BpiI	GAAGAC	3 cut(s)	581, 653, 863
BplI	GAGNNNNNCTC	2 cut(s)	649, 681
BpmI	CTGGAG	1 cut(s)	651
Bpu10I	CCTNAGC	2 cut(s)	377, 391
BpuEI	CTTGAG	2 cut(s)	560, 659
BpuMI	CCSGG	3 cut(s)	264, 446, 801
BsaJI	CCNNGG	3 cut(s)	800, 896, 905
BsaXI	ACNNNNNCTCC	2 cut(s)	948, 978
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	963
Bse3DI	GCAATG	1 cut(s)	763
BseBI	CCWGG	2 cut(s)	109, 898
BseDI	CCNNGG	3 cut(s)	800, 896, 905
BseGI	GGATG	2 cut(s)	473, 823
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	763
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	963
BseRI	GAGGAG	1 cut(s)	969
BseSI	GKGCMC	2 cut(s)	169, 399
BseXI	GCAGC	5 cut(s)	342, 351, 354, 729, 895
BshFI	GGCC	2 cut(s)	680, 940
BshNI	GGYRCC	2 cut(s)	124, 164
BsiHKAI	GWGCWC	1 cut(s)	675
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	4 cut(s)	264, 336, 445, 800
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	645
BsmBI	CGTCTC	1 cut(s)	645
BsmFI	GGGAC	1 cut(s)	265
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	2 cut(s)	680, 940
BsoBI	CYCGRG	1 cut(s)	229
Bsp1286I	GDGCHC	3 cut(s)	169, 399, 675
Bsp143I	GATC	1 cut(s)	613
BspACI	CCGC	4 cut(s)	116, 215, 629, 644
BspANI	GGCC	2 cut(s)	680, 940
BspCNI	CTCAG	1 cut(s)	369
BspLI	GGNNCC	4 cut(s)	113, 126, 166, 261
BspMAI	CTGCAG	1 cut(s)	737
BspMI	ACCTGC	1 cut(s)	740
BspT107I	GGYRCC	2 cut(s)	124, 164
BsrDI	GCAATG	1 cut(s)	763
BsrFI	RCCGGY	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	963
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	3 cut(s)	800, 896, 905
BssMI	GATC	1 cut(s)	613
BssNAI	GTATAC	1 cut(s)	442
BssT1I	CCWWGG	1 cut(s)	905
Bst1107I	GTATAC	1 cut(s)	442
Bst2UI	CCWGG	2 cut(s)	109, 898
Bst4CI	ACNGT	2 cut(s)	699, 862
Bst6I	CTCTTC	2 cut(s)	134, 978
BstAPI	GCANNNNNTGC	2 cut(s)	124, 212
BstC8I	GCNNGC	2 cut(s)	499, 954
BstDEI	CTNAG	2 cut(s)	377, 391
BstF5I	GGATG	2 cut(s)	473, 823
BstHHI	GCGC	2 cut(s)	463, 623
BstKTI	GATC	1 cut(s)	616
BstMAI	GTCTC	1 cut(s)	645
BstMBI	GATC	1 cut(s)	613
BstMWI	GCNNNNNNNGC	5 cut(s)	124, 212, 336, 339, 643
BstNI	CCWGG	2 cut(s)	109, 898
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	5 cut(s)	107, 262, 444, 799, 896
BstSFI	CTRYAG	2 cut(s)	346, 733
BstSLI	GKGCMC	2 cut(s)	169, 399
BstV1I	GCAGC	5 cut(s)	342, 351, 354, 729, 895
BstV2I	GAAGAC	3 cut(s)	581, 653, 863
BstZ17I	GTATAC	1 cut(s)	442
BsuI	GTATCC	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	680, 940
BtsCI	GGATG	2 cut(s)	473, 823
BtsIMutI	CAGTG	2 cut(s)	695, 956
BveI	ACCTGC	1 cut(s)	740
Cac8I	GCNNGC	2 cut(s)	499, 954
CaiI	CAGNNNCTG	1 cut(s)	345
CfoI	GCGC	2 cut(s)	463, 623
Cfr10I	RCCGGY	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	209, 729
CviAII	CATG	2 cut(s)	11, 212
CviJI	RGCY	8 cut(s)	345, 376, 390, 453, 673, 680, 742, 940
CviKI_1	RGCY	8 cut(s)	345, 376, 390, 453, 673, 680, 742, 940
CviQI	GTAC	2 cut(s)	209, 729
DdeI	CTNAG	2 cut(s)	377, 391
DpnI	GATC	1 cut(s)	615
DpnII	GATC	1 cut(s)	613
DraI	TTTAAA	1 cut(s)	69
DraIII	CACNNNGTG	2 cut(s)	403, 701
EaeI	YGGCCR	1 cut(s)	938
Eam1104I	CTCTTC	2 cut(s)	134, 978
EarI	CTCTTC	2 cut(s)	134, 978
EciI	GGCGGA	1 cut(s)	633
Ecl136II	GAGCTC	1 cut(s)	673
Eco130I	CCWWGG	1 cut(s)	905
Eco24I	GRGCYC	1 cut(s)	675
Eco53kI	GAGCTC	1 cut(s)	673
Eco88I	CYCGRG	1 cut(s)	229
EcoICRI	GAGCTC	1 cut(s)	673
EcoRI	GAATTC	1 cut(s)	485
EcoRII	CCWGG	2 cut(s)	107, 896
EcoT14I	CCWWGG	1 cut(s)	905
EcoT38I	GRGCYC	1 cut(s)	675
ErhI	CCWWGG	1 cut(s)	905
Esp3I	CGTCTC	1 cut(s)	645
FaeI	CATG	2 cut(s)	14, 215
FalI	AAGNNNNNCTT	2 cut(s)	31, 63
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	2 cut(s)	10, 211
FauI	CCCGC	2 cut(s)	123, 622
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	5 cut(s)	331, 340, 343, 743, 884
FokI	GGATG	2 cut(s)	460, 830
FriOI	GRGCYC	1 cut(s)	675
Fsp4HI	GCNGC	5 cut(s)	331, 340, 343, 743, 884
FspI	TGCGCA	1 cut(s)	622
GlaI	GCGC	2 cut(s)	462, 622
GluI	GCNGC	5 cut(s)	331, 340, 343, 743, 884
GsuI	CTGGAG	1 cut(s)	651
HaeIII	GGCC	2 cut(s)	680, 940
HapII	CCGG	4 cut(s)	264, 336, 445, 800
HhaI	GCGC	2 cut(s)	463, 623
Hin1II	CATG	2 cut(s)	14, 215
Hin6I	GCGC	2 cut(s)	461, 621
HinP1I	GCGC	2 cut(s)	461, 621
HindIII	AAGCTT	1 cut(s)	451
HinfI	GANTC	5 cut(s)	227, 254, 434, 658, 901
HpaII	CCGG	4 cut(s)	264, 336, 445, 800
HphI	GGTGA	3 cut(s)	26, 97, 881
Hpy166II	GTNNAC	2 cut(s)	271, 442
Hpy188I	TCNGA	4 cut(s)	150, 242, 253, 387
Hpy188III	TCNNGA	4 cut(s)	75, 136, 403, 668
Hpy8I	GTNNAC	2 cut(s)	271, 442
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	2 cut(s)	699, 862
HpyCH4IV	ACGT	3 cut(s)	278, 510, 851
HpyCH4V	TGCA	7 cut(s)	206, 310, 473, 547, 716, 735, 952
HpyF10VI	GCNNNNNNNGC	5 cut(s)	124, 212, 336, 339, 643
HpyF3I	CTNAG	2 cut(s)	377, 391
HpySE526I	ACGT	3 cut(s)	278, 510, 851
Hsp92II	CATG	2 cut(s)	14, 215
HspAI	GCGC	2 cut(s)	461, 621
Kzo9I	GATC	1 cut(s)	613
LmnI	GCTCC	1 cut(s)	739
Lsp1109I	GCAGC	5 cut(s)	342, 351, 354, 729, 895
LweI	GCATC	2 cut(s)	482, 534
MaeII	ACGT	3 cut(s)	278, 510, 851
MaeIII	GTNAC	1 cut(s)	693
MalI	GATC	1 cut(s)	615
MboI	GATC	1 cut(s)	613
MboII	GAAGA	7 cut(s)	45, 48, 151, 586, 653, 868, 965
MfeI	CAATTG	2 cut(s)	24, 934
MhlI	GDGCHC	3 cut(s)	169, 399, 675
MlsI	TGGCCA	1 cut(s)	940
MluCI	AATT	8 cut(s)	24, 485, 558, 591, 749, 934, 943, 1012
MluNI	TGGCCA	1 cut(s)	940
MlyI	GAGTC	2 cut(s)	221, 667
MmeI	TCCRAC	3 cut(s)	177, 204, 511
Mox20I	TGGCCA	1 cut(s)	940
MscI	TGGCCA	1 cut(s)	940
MseI	TTAA	3 cut(s)	68, 422, 582
MslI	CAYNNNNRTG	1 cut(s)	15
Msp20I	TGGCCA	1 cut(s)	940
MspA1I	CMGCKG	1 cut(s)	345
MspI	CCGG	4 cut(s)	264, 336, 445, 800
MspR9I	CCNGG	5 cut(s)	109, 264, 446, 801, 898
MunI	CAATTG	2 cut(s)	24, 934
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	2 cut(s)	109, 898
MwoI	GCNNNNNNNGC	5 cut(s)	124, 212, 336, 339, 643
NciI	CCSGG	3 cut(s)	264, 446, 801
NdeII	GATC	1 cut(s)	613
NlaIII	CATG	2 cut(s)	14, 215
NlaIV	GGNNCC	4 cut(s)	113, 126, 166, 261
NmuCI	GTSAC	1 cut(s)	693
NsbI	TGCGCA	1 cut(s)	622
NspI	RCATGY	1 cut(s)	215
PaeR7I	CTCGAG	1 cut(s)	229
PctI	GAATGC	1 cut(s)	208
PfeI	GAWTC	3 cut(s)	254, 434, 901
PkrI	GCNGC	5 cut(s)	332, 341, 344, 744, 885
PleI	GAGTC	2 cut(s)	221, 666
PpsI	GAGTC	2 cut(s)	221, 666
Psp124BI	GAGCTC	1 cut(s)	675
Psp6I	CCWGG	2 cut(s)	107, 896
PspGI	CCWGG	2 cut(s)	107, 896
PspN4I	GGNNCC	4 cut(s)	113, 126, 166, 261
PspXI	VCTCGAGB	1 cut(s)	229
PstI	CTGCAG	1 cut(s)	737
PstNI	CAGNNNCTG	1 cut(s)	345
PvuII	CAGCTG	1 cut(s)	345
RsaI	GTAC	2 cut(s)	210, 730
RsaNI	GTAC	2 cut(s)	209, 729
RseI	CAYNNNNRTG	1 cut(s)	15
SacI	GAGCTC	1 cut(s)	675
SaqAI	TTAA	3 cut(s)	68, 422, 582
SatI	GCNGC	5 cut(s)	331, 340, 343, 743, 884
Sau3AI	GATC	1 cut(s)	613
SbfI	CCTGCAGG	1 cut(s)	737
SchI	GAGTC	2 cut(s)	221, 667
ScrFI	CCNGG	5 cut(s)	109, 264, 446, 801, 898
SdaI	CCTGCAGG	1 cut(s)	737
SduI	GDGCHC	3 cut(s)	169, 399, 675
SfaNI	GCATC	2 cut(s)	482, 534
SfcI	CTRYAG	2 cut(s)	346, 733
Sfr274I	CTCGAG	1 cut(s)	229
SlaI	CTCGAG	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	15
SmlI	CTYRAG	3 cut(s)	229, 539, 674
SmoI	CTYRAG	3 cut(s)	229, 539, 674
Sse8387I	CCTGCAGG	1 cut(s)	737
Sse9I	AATT	8 cut(s)	24, 485, 558, 591, 749, 934, 943, 1012
SsiI	CCGC	4 cut(s)	116, 215, 629, 644
SstI	GAGCTC	1 cut(s)	675
StyD4I	CCNGG	5 cut(s)	107, 262, 444, 799, 896
StyI	CCWWGG	1 cut(s)	905
TaaI	ACNGT	2 cut(s)	699, 862
TaiI	ACGT	3 cut(s)	281, 513, 854
TaqI	TCGA	2 cut(s)	99, 230
TasI	AATT	8 cut(s)	24, 485, 558, 591, 749, 934, 943, 1012
TatI	WGTACW	1 cut(s)	208
TfiI	GAWTC	3 cut(s)	254, 434, 901
Tru1I	TTAA	3 cut(s)	68, 422, 582
Tru9I	TTAA	3 cut(s)	68, 422, 582
TscAI	CASTG	2 cut(s)	702, 963
TseFI	GTSAC	1 cut(s)	693
TseI	GCWGC	5 cut(s)	330, 339, 342, 742, 883
Tsp45I	GTSAC	1 cut(s)	693
TspGWI	ACGGA	1 cut(s)	956
TspRI	CASTG	2 cut(s)	702, 963
XapI	RAATTY	4 cut(s)	485, 558, 943, 1012
XceI	RCATGY	1 cut(s)	215
XhoI	CTCGAG	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.