MD16G1181300.v1.1

glutamine synthetase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
15556005 .. 15560438
4434 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1181300.v1.1.491

Sequence Viewer

Length: 1263 bp
ATGAAGGTTACAAAGAGCTCAGCAACTGCCAGTCCTATGACAGCAAAGATGTGGGGTTCTCTTGTGTTGAAACAGAACAAGAAAGGACCAACTCGGAGCTCTACTAAATTTAGAGTGCTCGCCACCAAGTCCGAAGGTTATACCATAAACAGGCTAGAGGGTTTACTAAACCTGGACCTCACTCCATTCACTGACAAGATTATTGCTGAGTACATTTGGATTGGAGGGTCAGGGATTGATGTTCGTAGCAAGTCAAGGACATTTTCAAAGCCTGTTGAAGATCCTTCTGAGCTTCCCAAGTGGAATTATGATGGATCAAGTACTGGACAAGCTCCTGGTGAAGACAGTGAAGTAATCTTATACCCTCAGGCGATATTTAAGGACCCTTTCCGTGGTGGCAACAATATTCTGGTAATTTGCGATGCATACACACCGCAAGGCGAGCCTATCCCAACAAACAAGCGCGCCAGGGCTGCTGAGATTTTCAAGAACAAGAAGGTTATAGACGAAGTCCCATGGTATGGGATTGAGCAAGAGTACACATTACTCCAAACTGATGTGAAATGGCCTTTGGGTTGGCCAGTTGGAGGTTATCCTGGTCCTCAGGGTCCTTACTACTGTGGTGCTGGTGCAGACAAGTCATTCGGACGTGACATATCAGATGCTCACTACAAGGCTTGCCTATATGCCGGAATTAACATCAGTGGCACCAATGGGGAGGTTATGCCTGGCCAGTGGGAGTATCAAGTTGGTCCGAGTGTGGGAATTGAAGCAGGAGATCATATCTGGGCTTCAAGATACATTCTTGAGAGAATCACTGAACAAGCTGGTGTTGTTCTCACACTTGATCCAAAACCTATAGAGGGTGACTGGAACGGTGCAGGATGCCACACCAATTACAGTACAAAGAGCATGAGAGAAGACGGAGGCTTTGAAGTTATTAAGAAGGCAATTTTGAATCTGTCACTTCGCCATGGTGAGCACATTAGTGCCTACGGAGAAGGAAATGAGAGAAGGTTGACAGGAAAGCATGAAACAGCCAGCATTAACACATTTTCTTGGGGAGTGGCTAATCGTGGTTGCTCAATCCGTGTTGGTCGTGAAACTGAGAAGCAAGGAAAAGGTTATCTGGAGGATCGTCGTCCAGCTTCAAACATGGACCCTTACATTGTGACCTCACTACTGGCAGAAACTACATTGTTGTGGGAGCCAACCCTTGAGGCTGAAGCTCTTGCAGCTCAAAAGCTTTCATTGAATGTCTGA

Protein Analysis

421

Amino Acids

46.22

Weight (kDa)

6.37

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gln-synt_N PF03951 80 - 145 8.3e-09 Glutamine synthetase, beta-Grasp domain
Gln-synt_C PF00120 175 - 302 4.5e-10 Glutamine synthetase, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0009789)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 707
AccB7I CCANNNNNTGG 1 cut(s) 521
AccII CGCG 1 cut(s) 465
AciI CCGC 1 cut(s) 434
AclWI GGATC 4 cut(s) 275, 322, 842, 1143
AcoI YGGCCR 2 cut(s) 578, 730
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 1245
AfaI GTAC 4 cut(s) 212, 322, 539, 904
AfiI CCNNNNNNNGG 6 cut(s) 150, 392, 521, 587, 761, 863
AjiI CACGTC 1 cut(s) 650
AjnI CCWGG 5 cut(s) 171, 334, 467, 595, 727
AjuI GAANNNNNNNTTGG 2 cut(s) 554, 586
AleI CACNNNNGTG 1 cut(s) 987
AluBI AGCT 9 cut(s) 18, 99, 292, 332, 827, 1148, 1229, 1238, 1246
AluI AGCT 9 cut(s) 18, 99, 292, 332, 827, 1148, 1229, 1238, 1246
Alw21I GWGCWC 4 cut(s) 20, 101, 120, 984
AlwI GGATC 4 cut(s) 275, 322, 842, 1143
AlwNI CAGNNNCTG 1 cut(s) 26
AoxI GGCC 3 cut(s) 566, 578, 730
ApeKI GCWGC 2 cut(s) 473, 1235
ApoI RAATTY 1 cut(s) 107
ArsI GACNNNNNNTTYG 4 cut(s) 626, 658, 914, 946
AspLEI GCGC 2 cut(s) 465, 467
AspS9I GGNCC 7 cut(s) 86, 175, 382, 599, 608, 752, 1159
AsuHPI GGTGA 3 cut(s) 350, 878, 989
AvaII GGWCC 7 cut(s) 86, 175, 382, 599, 608, 752, 1159
AxyI CCTNAGG 2 cut(s) 366, 603
BalI TGGCCA 2 cut(s) 580, 732
BanI GGYRCC 1 cut(s) 707
BanII GRGCYC 2 cut(s) 20, 101
BbsI GAAGAC 2 cut(s) 348, 927
Bbv12I GWGCWC 4 cut(s) 20, 101, 120, 984
BbvI GCAGC 2 cut(s) 460, 1247
BccI CCATC 1 cut(s) 305
BciT130I CCWGG 5 cut(s) 173, 336, 469, 597, 729
BfaI CTAG 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 858
BisI GCNGC 2 cut(s) 474, 1236
BlpI GCTNAGC 1 cut(s) 19
BlsI GCNGC 2 cut(s) 475, 1237
BmcAI AGTACT 1 cut(s) 322
Bme1390I CCNGG 5 cut(s) 173, 336, 469, 597, 729
Bme18I GGWCC 7 cut(s) 86, 175, 382, 599, 608, 752, 1159
BmgBI CACGTC 1 cut(s) 650
BmgT120I GGNCC 7 cut(s) 86, 175, 382, 599, 608, 752, 1159
BmiI GGNNCC 5 cut(s) 384, 609, 709, 1161, 1209
BmrFI CCNGG 5 cut(s) 173, 336, 469, 597, 729
BmsI GCATC 3 cut(s) 412, 652, 875
BpiI GAAGAC 2 cut(s) 348, 927
BpmI CTGGAG 1 cut(s) 1151
Bpu1102I GCTNAGC 1 cut(s) 19
BpuEI CTTGAG 2 cut(s) 827, 1238
BsaJI CCNNGG 4 cut(s) 391, 468, 515, 973
Bsc4I CCNNNNNNNGG 6 cut(s) 150, 392, 521, 587, 761, 863
Bse1I ACTGG 6 cut(s) 30, 328, 581, 733, 875, 1188
Bse21I CCTNAGG 2 cut(s) 366, 603
BseBI CCWGG 5 cut(s) 173, 336, 469, 597, 729
BseDI CCNNGG 4 cut(s) 391, 468, 515, 973
BseGI GGATG 1 cut(s) 890
BseLI CCNNNNNNNGG 6 cut(s) 150, 392, 521, 587, 761, 863
BseMII CTCAG 7 cut(s) 33, 198, 279, 380, 468, 617, 1098
BseNI ACTGG 6 cut(s) 30, 328, 581, 733, 875, 1188
BsePI GCGCGC 1 cut(s) 463
BseXI GCAGC 2 cut(s) 460, 1247
BsgI GTGCAG 2 cut(s) 651, 900
Bsh1236I CGCG 1 cut(s) 465
BshFI GGCC 3 cut(s) 568, 580, 732
BshNI GGYRCC 1 cut(s) 707
BsiHKAI GWGCWC 4 cut(s) 20, 101, 120, 984
BsiSI CCGG 1 cut(s) 690
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 6 cut(s) 150, 392, 521, 587, 761, 863
BsmFI GGGAC 1 cut(s) 497
BsnI GGCC 3 cut(s) 568, 580, 732
Bsp1286I GDGCHC 4 cut(s) 20, 101, 120, 984
Bsp143I GATC 5 cut(s) 280, 314, 778, 847, 1135
Bsp1720I GCTNAGC 1 cut(s) 19
Bsp19I CCATGG 2 cut(s) 515, 973
BspACI CCGC 1 cut(s) 434
BspANI GGCC 3 cut(s) 568, 580, 732
BspCNI CTCAG 7 cut(s) 32, 199, 280, 379, 469, 616, 1099
BspFNI CGCG 1 cut(s) 465
BspLI GGNNCC 5 cut(s) 384, 609, 709, 1161, 1209
BspPI GGATC 4 cut(s) 275, 322, 842, 1143
BspT107I GGYRCC 1 cut(s) 707
BsrI ACTGG 6 cut(s) 30, 328, 581, 733, 875, 1188
BssECI CCNNGG 4 cut(s) 391, 468, 515, 973
BssHII GCGCGC 1 cut(s) 463
BssMI GATC 5 cut(s) 280, 314, 778, 847, 1135
BssT1I CCWWGG 2 cut(s) 515, 973
Bst2UI CCWGG 5 cut(s) 173, 336, 469, 597, 729
Bst4CI ACNGT 4 cut(s) 347, 620, 878, 902
BstC8I GCNNGC 5 cut(s) 120, 443, 465, 679, 1042
BstDEI CTNAG 7 cut(s) 19, 207, 288, 366, 477, 603, 1107
BstDSI CCRYGG 3 cut(s) 391, 515, 973
BstF5I GGATG 1 cut(s) 890
BstFNI CGCG 1 cut(s) 465
BstHHI GCGC 2 cut(s) 465, 467
BstKTI GATC 5 cut(s) 283, 317, 781, 850, 1138
BstMBI GATC 5 cut(s) 280, 314, 778, 847, 1135
BstMWI GCNNNNNNNGC 3 cut(s) 442, 473, 1235
BstNI CCWGG 5 cut(s) 173, 336, 469, 597, 729
BstSCI CCNGG 5 cut(s) 171, 334, 467, 595, 727
BstSFI CTRYAG 1 cut(s) 858
BstUI CGCG 1 cut(s) 465
BstV1I GCAGC 2 cut(s) 460, 1247
BstV2I GAAGAC 2 cut(s) 348, 927
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
Bsu36I CCTNAGG 2 cut(s) 366, 603
BsuRI GGCC 3 cut(s) 568, 580, 732
BtgI CCRYGG 3 cut(s) 391, 515, 973
BtgZI GCGATG 1 cut(s) 435
BtrI CACGTC 1 cut(s) 650
BtsCI GGATG 1 cut(s) 890
BtsIMutI CAGTG 5 cut(s) 189, 352, 709, 740, 816
Cac8I GCNNGC 5 cut(s) 120, 443, 465, 679, 1042
CaiI CAGNNNCTG 1 cut(s) 26
CfoI GCGC 2 cut(s) 465, 467
Cfr13I GGNCC 7 cut(s) 86, 175, 382, 599, 608, 752, 1159
Csp6I GTAC 4 cut(s) 211, 321, 538, 903
CviAII CATG 5 cut(s) 516, 913, 974, 1031, 1156
CviQI GTAC 4 cut(s) 211, 321, 538, 903
DdeI CTNAG 7 cut(s) 19, 207, 288, 366, 477, 603, 1107
DpnI GATC 5 cut(s) 282, 316, 780, 849, 1137
DpnII GATC 5 cut(s) 280, 314, 778, 847, 1135
EaeI YGGCCR 2 cut(s) 578, 730
Ecl136II GAGCTC 2 cut(s) 18, 99
Eco130I CCWWGG 2 cut(s) 515, 973
Eco24I GRGCYC 2 cut(s) 20, 101
Eco47I GGWCC 7 cut(s) 86, 175, 382, 599, 608, 752, 1159
Eco53kI GAGCTC 2 cut(s) 18, 99
Eco57I CTGAAG 1 cut(s) 1245
Eco81I CCTNAGG 2 cut(s) 366, 603
EcoICRI GAGCTC 2 cut(s) 18, 99
EcoO109I RGGNCCY 2 cut(s) 382, 608
EcoRII CCWGG 5 cut(s) 171, 334, 467, 595, 727
EcoT14I CCWWGG 2 cut(s) 515, 973
EcoT22I ATGCAT 1 cut(s) 427
EcoT38I GRGCYC 2 cut(s) 20, 101
ErhI CCWWGG 2 cut(s) 515, 973
FaeI CATG 5 cut(s) 519, 916, 977, 1034, 1159
FaqI GGGAC 1 cut(s) 497
FatI CATG 5 cut(s) 515, 912, 973, 1030, 1155
Fnu4HI GCNGC 2 cut(s) 474, 1236
FokI GGATG 1 cut(s) 897
FriOI GRGCYC 2 cut(s) 20, 101
Fsp4HI GCNGC 2 cut(s) 474, 1236
FspBI CTAG 1 cut(s) 155
GlaI GCGC 2 cut(s) 464, 466
GluI GCNGC 2 cut(s) 474, 1236
GsuI CTGGAG 1 cut(s) 1151
HaeIII GGCC 3 cut(s) 568, 580, 732
HapII CCGG 1 cut(s) 690
HhaI GCGC 2 cut(s) 465, 467
Hin1II CATG 5 cut(s) 519, 916, 977, 1034, 1159
Hin6I GCGC 2 cut(s) 463, 465
HinP1I GCGC 2 cut(s) 463, 465
HincII GTYRAC 1 cut(s) 1020
HindII GTYRAC 1 cut(s) 1020
HindIII AAGCTT 1 cut(s) 1244
HinfI GANTC 2 cut(s) 813, 958
HpaII CCGG 1 cut(s) 690
HphI GGTGA 3 cut(s) 350, 878, 989
Hpy166II GTNNAC 3 cut(s) 164, 540, 1020
Hpy188I TCNGA 7 cut(s) 96, 133, 289, 647, 661, 756, 1262
Hpy188III TCNNGA 5 cut(s) 487, 795, 806, 1100, 1130
Hpy8I GTNNAC 3 cut(s) 164, 540, 1020
Hpy99I CGWCG 1 cut(s) 1143
HpyAV CCTTC 6 cut(s) 128, 294, 490, 940, 995, 1008
HpyCH4III ACNGT 4 cut(s) 347, 620, 878, 902
HpyCH4IV ACGT 1 cut(s) 649
HpyCH4V TGCA 4 cut(s) 425, 632, 881, 1235
HpyF10VI GCNNNNNNNGC 3 cut(s) 442, 473, 1235
HpyF3I CTNAG 7 cut(s) 19, 207, 288, 366, 477, 603, 1107
HpySE526I ACGT 1 cut(s) 649
Hsp92II CATG 5 cut(s) 519, 916, 977, 1034, 1159
HspAI GCGC 2 cut(s) 463, 465
Kzo9I GATC 5 cut(s) 280, 314, 778, 847, 1135
LmnI GCTCC 3 cut(s) 96, 337, 1207
Lsp1109I GCAGC 2 cut(s) 460, 1247
LweI GCATC 3 cut(s) 412, 652, 875
MaeI CTAG 1 cut(s) 155
MaeII ACGT 1 cut(s) 649
MaeIII GTNAC 5 cut(s) 7, 650, 866, 963, 1171
MalI GATC 5 cut(s) 282, 316, 780, 849, 1137
MboI GATC 5 cut(s) 280, 314, 778, 847, 1135
MboII GAAGA 3 cut(s) 290, 353, 932
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 4 cut(s) 20, 101, 120, 984
MlsI TGGCCA 2 cut(s) 580, 732
MluCI AATT 7 cut(s) 107, 304, 414, 693, 765, 895, 951
MluNI TGGCCA 2 cut(s) 580, 732
MmeI TCCRAC 1 cut(s) 565
Mox20I TGGCCA 2 cut(s) 580, 732
Mph1103I ATGCAT 1 cut(s) 427
MscI TGGCCA 2 cut(s) 580, 732
MseI TTAA 4 cut(s) 378, 696, 942, 1047
MslI CAYNNNNRTG 2 cut(s) 987, 1201
Msp20I TGGCCA 2 cut(s) 580, 732
MspI CCGG 1 cut(s) 690
MspR9I CCNGG 5 cut(s) 173, 336, 469, 597, 729
MvaI CCWGG 5 cut(s) 173, 336, 469, 597, 729
MvnI CGCG 1 cut(s) 465
MwoI GCNNNNNNNGC 3 cut(s) 442, 473, 1235
NcoI CCATGG 2 cut(s) 515, 973
NdeII GATC 5 cut(s) 280, 314, 778, 847, 1135
NlaIII CATG 5 cut(s) 519, 916, 977, 1034, 1159
NlaIV GGNNCC 5 cut(s) 384, 609, 709, 1161, 1209
NmuCI GTSAC 4 cut(s) 650, 866, 963, 1171
NsiI ATGCAT 1 cut(s) 427
OliI CACNNNNGTG 1 cut(s) 987
PauI GCGCGC 1 cut(s) 463
PfeI GAWTC 2 cut(s) 813, 958
PflFI GACNNNGTC 1 cut(s) 509
PflMI CCANNNNNTGG 1 cut(s) 521
PkrI GCNGC 2 cut(s) 475, 1237
PpuMI RGGWCCY 2 cut(s) 382, 608
Psp124BI GAGCTC 2 cut(s) 20, 101
Psp5II RGGWCCY 2 cut(s) 382, 608
Psp6I CCWGG 5 cut(s) 171, 334, 467, 595, 727
PspGI CCWGG 5 cut(s) 171, 334, 467, 595, 727
PspN4I GGNNCC 5 cut(s) 384, 609, 709, 1161, 1209
PspPI GGNCC 7 cut(s) 86, 175, 382, 599, 608, 752, 1159
PspPPI RGGWCCY 2 cut(s) 382, 608
PstNI CAGNNNCTG 1 cut(s) 26
PsuI RGATCY 1 cut(s) 280
PsyI GACNNNGTC 1 cut(s) 509
PteI GCGCGC 1 cut(s) 463
RsaI GTAC 4 cut(s) 212, 322, 539, 904
RsaNI GTAC 4 cut(s) 211, 321, 538, 903
RseI CAYNNNNRTG 2 cut(s) 987, 1201
SacI GAGCTC 2 cut(s) 20, 101
SaqAI TTAA 4 cut(s) 378, 696, 942, 1047
SatI GCNGC 2 cut(s) 474, 1236
Sau3AI GATC 5 cut(s) 280, 314, 778, 847, 1135
Sau96I GGNCC 7 cut(s) 86, 175, 382, 599, 608, 752, 1159
ScaI AGTACT 1 cut(s) 322
ScrFI CCNGG 5 cut(s) 173, 336, 469, 597, 729
SduI GDGCHC 4 cut(s) 20, 101, 120, 984
SfaNI GCATC 3 cut(s) 412, 652, 875
SfcI CTRYAG 1 cut(s) 858
SinI GGWCC 7 cut(s) 86, 175, 382, 599, 608, 752, 1159
SmiMI CAYNNNNRTG 2 cut(s) 987, 1201
SmlI CTYRAG 2 cut(s) 806, 1217
SmoI CTYRAG 2 cut(s) 806, 1217
Sse9I AATT 7 cut(s) 107, 304, 414, 693, 765, 895, 951
SsiI CCGC 1 cut(s) 434
SspI AATATT 1 cut(s) 406
SspMI CTAG 1 cut(s) 155
SstI GAGCTC 2 cut(s) 20, 101
StyD4I CCNGG 5 cut(s) 171, 334, 467, 595, 727
StyI CCWWGG 2 cut(s) 515, 973
TaaI ACNGT 4 cut(s) 347, 620, 878, 902
TaiI ACGT 1 cut(s) 652
TasI AATT 7 cut(s) 107, 304, 414, 693, 765, 895, 951
TatI WGTACW 4 cut(s) 210, 320, 537, 902
TfiI GAWTC 2 cut(s) 813, 958
Tru1I TTAA 4 cut(s) 378, 696, 942, 1047
Tru9I TTAA 4 cut(s) 378, 696, 942, 1047
TscAI CASTG 5 cut(s) 196, 352, 709, 740, 823
TseFI GTSAC 4 cut(s) 650, 866, 963, 1171
TseI GCWGC 2 cut(s) 473, 1235
Tsp45I GTSAC 4 cut(s) 650, 866, 963, 1171
TspDTI ATGAA 3 cut(s) 17, 1047, 1239
TspGWI ACGGA 4 cut(s) 380, 939, 1011, 1079
TspRI CASTG 5 cut(s) 196, 352, 709, 740, 823
Tth111I GACNNNGTC 1 cut(s) 509
Van91I CCANNNNNTGG 1 cut(s) 521
VpaK11BI GGWCC 7 cut(s) 86, 175, 382, 599, 608, 752, 1159
XapI RAATTY 1 cut(s) 107
XspI CTAG 1 cut(s) 155
ZrmI AGTACT 1 cut(s) 322
Zsp2I ATGCAT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.