AT5G35840

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013571
Physical Location & Seq
Forward (+)
14007812 .. 14011848
4037 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G35840.1

Sequence Viewer

Length: 3336 bp
ATGTCATCGAACACTTCACGAAGCTGTTCTACTAGATCTAGACAAAACTCTCGAGTTTCTTCACAAGTTCTCGTCGACGCAAAGCTACACGGAAACTTCGAAGAATCTGAGCGTTTATTTGACTATTCAGCTTCAATAAACTTGAACATGCCAAGTTCTTCCTGTGAGATTCCTTCTTCAGCTGTCTCAACGTACTTACAGAAGATTCAGAGAGGGATGTTGATTCAACCCTTTGGTTGTTTAATCGTTGTTGATGAGAAAAACCTTAAAGTCATTGCCTTTAGTGAAAACACTCAAGAGATGTTGGGTTTGATTCCACATACAGTACCAAGTATGGAGCAGCGTGAAGCTTTGACTATAGGAACTGATGTGAAATCATTGTTTCTGTCTCCAGGTTGTTCTGCTTTGGAGAAAGCTGTTGACTTTGGTGAGATTAGTATTTTGAATCCTATCACGCTTCATTGTAGGTCTTCAAGTAAGCCTTTTTATGCGATTCTGCATCGGATTGAGGAAGGTCTTGTTATAGATTTGGAGCCTGTGAGTCCTGATGAGGTGCCTGTGACTGCTGCCGGGGCTTTAAGATCGTATAAGCTTGCGGCGAAATCGATTTCGAGGTTGCAGGCATTGCCTAGTGGGAATATGTTGTTGTTGTGTGATGCTTTGGTTAAGGAAGTTAGTGAATTAACTGGTTATGATAGGGTGATGGTGTATAAGTTCCATGAGGATGGGCATGGGGAAGTGATTGCTGAATGCTGCCGGGAAGATATGGAACCTTATCTTGGGTTGCATTACTCCGCTACTGATATACCGCAAGCTTCGAGATTTCTGTTTATGAGAAACAAGGTTAGGATGATTTGTGATTGTTCAGCGGTTCCGGTTAAAGTCGTTCAAGATAAGAGTCTCTCACAGCCAATAAGTCTTTCTGGATCTACTTTGAGAGCTCCTCATGGTTGTCACGCACAGTATATGAGTAATATGGGATCAGTGGCGTCTCTTGTCATGTCTGTAACTATCAATGGTAGTGATAGTGATGAGATGAACAGAGATTTACAGACTGGCAGACACTTATGGGGCTTGGTGGTTTGTCATCACGCAAGTCCTAGATTTGTTCCGTTTCCATTACGATATGCTTGTGAATTCTTGACTCAAGTATTTGGCGTGCAGATCAACAAAGAAGCGGAATCAGCTGTTCTGTTGAAAGAGAAGCGTATTTTGCAAACTCAGAGTGTGCTATGTGACATGCTTTTCCGCAATGCACCAATAGGTATAGTCACTCAATCACCAAATATAATGGATCTTGTTAAATGTGATGGAGCAGCATTATATTACAGAGACAACCTCTGGTCTCTAGGAGTTACTCCCACAGAGACACAAATTAGAGATCTAATTGACTGGGTTCTCAAAAGTCATGGAGGAAACACTGGCTTTACCACTGAAAGTCTAATGGAGTCTGGCTATCCGGATGCTTCTGTTCTTGGGGAGTCAATATGTGGAATGGCTGCCGTATATATTTCCGAAAAAGATTTCCTTTTCTGGTTCCGGTCTAGCACTGCAAAACAGATCAAGTGGGGTGGTGCAAGACACGATCCTAATGACAGAGATGGTAAGAGAATGCATCCTAGATCCTCATTCAAGGCTTTTATGGAAATAGTCAGGTGGAAAAGTGTGCCCTGGGATGACATGGAAATGGATGCAATTAATTCTCTGCAGCTAATAATAAAAGGCTCATTGCAAGAGGAGCATTCAAAGACTGTTGTGGATGTCCCACTTGTGGATAATAGGGTTCAGAAGGTAGATGAATTGTGTGTTATCGTGAATGAAATGGTGCGGTTGATTGATACAGCAGCTGTTCCCATCTTTGCGGTTGATGCCTCTGGTGTTATAAATGGTTGGAATTCTAAAGCGGCTGAGGTAACAGGATTGGCAGTTGAACAAGCAATAGGCAAACCTGTATCAGATCTCGTTGAGGACGATTCTGTAGAAACCGTGAAGAACATGTTAGCCTTGGCTCTCGAAGGTAGTGAAGAACGTGGTGCTGAGATCAGGATCAGAGCATTTGGTCCTAAAAGGAAAAGCAGTCCGGTTGAGTTAGTTGTCAACACTTGTTGTAGCAGAGATATGACGAATAATGTTCTTGGTGTATGCTTCATTGGACAAGATGTTACAGGCCAGAAAACGCTTACTGAAAACTATAGCCGCGTGAAAGGAGATTATGCCCGAATCATGTGGAGCCCTTCCACACTCATTCCACCAATTTTTATAACCAATGAAAATGGGGTATGCTCAGAGTGGAACAACGCAATGCAGAAGCTCTCTGGGATAAAGAGAGAAGAAGTTGTCAATAAAATTCTTCTCGGGGAGGTTTTTACCACAGATGATTATGGTTGCTGCCTTAAAGACCATGACACTTTAACGAAGCTGAGAATAGGTTTCAATGCTGTGATTTCTGGCCAAAAGAACATAGAGAAGCTTTTATTTGGCTTTTACCATCGTGATGGTAGCTTCATCGAGGCATTGCTTTCTGCAAACAAAAGGACTGATATTGAGGGAAAGGTTACCGGGGTTTTATGCTTTTTGCAAGTACCTAGTCCAGAACTCCAATATGCTCTACAGGTTCAGCAAATATCAGAGCATGCAATTGCCTGTGCCCTCAACAAATTGGCATATCTCCGCCATGAAGTGAAGGACCCCGAAAAGGCAATATCCTTCCTTCAAGATTTGCTCCATTCATCTGGATTAAGTGAAGACCAAAAGCGGCTCCTGAGGACAAGCGTTTTATGCAGGGAGCAGTTAGCCAAAGTCATAAGCGACTCAGACATAGAGGGAATCGAAGAAGGCTATGTGGAACTGGATTGCAGCGAATTCGGCCTGCAGGAATCCCTGGAAGCAGTTGTAAAACAAGTGATGGAGCTGAGCATAGAACGTAAAGTACAAATCAGCTGCGATTATCCTCAAGAAGTTTCATCAATGAGATTGTATGGAGACAACTTAAGGCTTCAGCAAATCCTTTCAGAGACACTATTAAGCAGCATACGCTTCACGCCTGCATTGAGAGGATTGTGTGTCTCATTCAAGGTAATTGCACGGATAGAAGCTATAGGAAAAAGAATGAAAAGAGTCGAACTTGAGTTCAGGATAATACACCCGGCACCAGGACTGCCTGAGGATCTGGTAAGAGAGATGTTTCAGCCTTTGAGAAAGGGAACATCAAGGGAAGGTTTGGGATTACACATTACCCAGAAGCTGGTGAAACTCATGGAGAGAGGAACATTGAGATACCTCAGAGAGTCTGAAATGTCAGCCTTTGTGATCCTCACAGAATTTCCCTTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

1111

Amino Acids

123.72

Weight (kDa)

5.73

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 65 - 180 8.4e-37 PAS fold
GAF PF01590 216 - 390 4.7e-16 GAF domain
PHY PF00360 406 - 580 8.2e-57 Phytochrome region
PAS PF00989 607 - 721 3.2e-25 PAS fold
PAS_4 PF08448 615 - 725 1.3e-07 PAS fold
PAS PF00989 737 - 860 1.1e-21 PAS fold
HATPase_c PF02518 994 - 1098 5.8e-10 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013571)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35840
fragaria_vesca FvH4_6g40650 FvH4_6g40650 FvH4_6g40650
malus_domestica MD09G1126400.v1.1
prunus_persica Prupe.3G198200_v2.0.a1 Prupe.3G198200_v2.0.a1
pyrus_communis pycom09g05070 pycom17g10740
rosa_chinensis RchiOBHm_Chr2g0156021
rosa_laevigata RLG00000020882
rosa_multiflora Rmu_sc0011922.1_g000002
rosa_rugosa Rorug02G0451300
rosa_samantha Rh2AG518100 Rh2BG529300 Rh2CG502800 Rh2DG538400
rosa_wichuraiana Rw2G042660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1883, 2261
AccB1I GGYRCC 2 cut(s) 553, 3148
AccB7I CCANNNNNTGG 1 cut(s) 3244
AccI GTMKAC 1 cut(s) 75
AccII CGCG 1 cut(s) 2199
AccIII TCCGGA 1 cut(s) 1459
AclWI GGATC 8 cut(s) 934, 988, 1302, 1580, 1617, 2054, 3174, 3304
AcoI YGGCCR 1 cut(s) 2449
AcsI RAATTY 5 cut(s) 1136, 1894, 2346, 2861, 3320
AcuI CTGAAG 2 cut(s) 162, 2981
AcyI GRCGYC 1 cut(s) 989
AfaI GTAC 4 cut(s) 194, 327, 2583, 2931
AfiI CCNNNNNNNGG 5 cut(s) 779, 1771, 2695, 3152, 3244
AflII CTTAAG 1 cut(s) 2989
AflIII ACRYGT 1 cut(s) 1995
AjnI CCWGG 4 cut(s) 391, 1670, 2880, 3151
AjuI GAANNNNNNNTTGG 4 cut(s) 762, 794, 904, 936
Alw21I GWGCWC 1 cut(s) 943
AlwI GGATC 8 cut(s) 934, 988, 1302, 1580, 1617, 2054, 3174, 3304
AlwNI CAGNNNCTG 2 cut(s) 1847, 3244
Ama87I CYCGRG 2 cut(s) 51, 2354
Aor13HI TCCGGA 1 cut(s) 1459
AoxI GGCC 3 cut(s) 2167, 2449, 2866
ApoI RAATTY 5 cut(s) 1136, 1894, 2346, 2861, 3320
AseI ATTAAT 1 cut(s) 1698
Asp700I GAANNNNTTC 1 cut(s) 25
AspS9I GGNCC 2 cut(s) 2060, 2686
AsuC2I CCSGG 4 cut(s) 571, 758, 2560, 3146
AsuHPI GGTGA 4 cut(s) 440, 712, 1272, 3259
AsuII TTCGAA 1 cut(s) 99
AvaI CYCGRG 2 cut(s) 51, 2354
AvaII GGWCC 2 cut(s) 2060, 2686
AxyI CCTNAGG 2 cut(s) 2762, 3162
BaeGI GKGCMC 2 cut(s) 1671, 2650
BalI TGGCCA 1 cut(s) 2451
BanI GGYRCC 2 cut(s) 553, 3148
BanII GRGCYC 2 cut(s) 943, 2234
BarI GAAGNNNNNNTAC 2 cut(s) 13, 45
BbsI GAAGAC 2 cut(s) 462, 2751
Bbv12I GWGCWC 1 cut(s) 943
BbvCI CCTCAGC 1 cut(s) 1908
BccI CCATC 8 cut(s) 697, 719, 1304, 1595, 1862, 2489, 2496, 2899
BceAI ACGGC 1 cut(s) 1487
BcgI CGANNNNNNTGC 2 cut(s) 2845, 2879
BciT130I CCWGG 4 cut(s) 393, 1672, 2882, 3153
BcnI CCSGG 4 cut(s) 571, 758, 2560, 3146
BfaI CTAG 8 cut(s) 33, 39, 630, 1101, 1349, 1545, 1620, 2586
BfmI CTRYAG 7 cut(s) 357, 1706, 1977, 2191, 2609, 2870, 3096
BfrI CTTAAG 1 cut(s) 2989
BglII AGATCT 3 cut(s) 35, 1381, 1957
BlpI GCTNAGC 1 cut(s) 2912
Bme1390I CCNGG 8 cut(s) 393, 571, 758, 1672, 2560, 2882, 3146, 3153
Bme18I GGWCC 2 cut(s) 2060, 2686
BmeT110I CYCGRG 2 cut(s) 51, 2354
BmgT120I GGNCC 2 cut(s) 2060, 2686
BmiI GGNNCC 9 cut(s) 534, 555, 771, 873, 1538, 2231, 2688, 2759, 3150
BmrFI CCNGG 8 cut(s) 393, 571, 758, 1672, 2560, 2882, 3146, 3153
BmrI ACTGGG 1 cut(s) 1402
BmsI GCATC 6 cut(s) 508, 646, 1453, 1624, 1681, 1858
BmuI ACTGGG 1 cut(s) 1402
BpiI GAAGAC 2 cut(s) 462, 2751
BplI GAGNNNNNCTC 4 cut(s) 928, 960, 1323, 1355
BpmI CTGGAG 1 cut(s) 375
Bpu10I CCTNAGC 1 cut(s) 1908
Bpu1102I GCTNAGC 1 cut(s) 2912
Bpu14I TTCGAA 1 cut(s) 99
BpuEI CTTGAG 4 cut(s) 279, 1131, 2937, 3146
BpuMI CCSGG 4 cut(s) 571, 758, 2560, 3146
Bsa29I ATCGAT 1 cut(s) 605
BsaBI GATNNNNATC 1 cut(s) 2045
BsaHI GRCGYC 1 cut(s) 989
BsaI GGTCTC 1 cut(s) 1350
BsaJI CCNNGG 6 cut(s) 570, 1670, 1671, 2004, 2559, 2880
BsaWI WCCGGW 4 cut(s) 874, 1459, 1539, 2080
Bsc4I CCNNNNNNNGG 5 cut(s) 779, 1771, 2695, 3152, 3244
Bse1I ACTGG 5 cut(s) 691, 1060, 1397, 1426, 2853
Bse21I CCTNAGG 2 cut(s) 2762, 3162
Bse3DI GCAATG 6 cut(s) 273, 623, 1258, 1727, 2307, 2513
Bse8I GATNNNNATC 1 cut(s) 2045
BseAI TCCGGA 1 cut(s) 1459
BseBI CCWGG 4 cut(s) 393, 1672, 2882, 3153
BseCI ATCGAT 1 cut(s) 605
BseDI CCNNGG 6 cut(s) 570, 1670, 1671, 2004, 2559, 2880
BseGI GGATG 8 cut(s) 222, 730, 855, 1468, 1615, 1681, 1696, 1765
BseJI GATNNNNATC 1 cut(s) 2045
BseLI CCNNNNNNNGG 5 cut(s) 779, 1771, 2695, 3152, 3244
BseMI GCAATG 6 cut(s) 273, 623, 1258, 1727, 2307, 2513
BseNI ACTGG 5 cut(s) 691, 1060, 1397, 1426, 2853
BseRI GAGGAG 2 cut(s) 933, 1751
BseSI GKGCMC 2 cut(s) 1671, 2650
BsgI GTGCAG 1 cut(s) 1181
Bsh1236I CGCG 1 cut(s) 2199
BshFI GGCC 3 cut(s) 2169, 2451, 2868
BshNI GGYRCC 2 cut(s) 553, 3148
BshVI ATCGAT 1 cut(s) 605
BsiHKAI GWGCWC 1 cut(s) 943
BsiHKCI CYCGRG 2 cut(s) 51, 2354
BsiSI CCGG 8 cut(s) 570, 757, 875, 1460, 1540, 2081, 2559, 3146
BslFI GGGAC 1 cut(s) 1748
BslI CCNNNNNNNGG 5 cut(s) 779, 1771, 2695, 3152, 3244
BsmBI CGTCTC 1 cut(s) 996
BsmFI GGGAC 1 cut(s) 1748
BsmI GAATGC 3 cut(s) 755, 1617, 1741
BsnI GGCC 3 cut(s) 2169, 2451, 2868
Bso31I GGTCTC 1 cut(s) 1350
BsoBI CYCGRG 2 cut(s) 51, 2354
Bsp119I TTCGAA 1 cut(s) 99
Bsp1286I GDGCHC 4 cut(s) 943, 1671, 2234, 2650
Bsp13I TCCGGA 1 cut(s) 1459
Bsp1720I GCTNAGC 1 cut(s) 2912
BspANI GGCC 3 cut(s) 2169, 2451, 2868
BspDI ATCGAT 1 cut(s) 605
BspEI TCCGGA 1 cut(s) 1459
BspFNI CGCG 1 cut(s) 2199
BspLI GGNNCC 9 cut(s) 534, 555, 771, 873, 1538, 2231, 2688, 2759, 3150
BspMAI CTGCAG 2 cut(s) 1710, 2874
BspPI GGATC 8 cut(s) 934, 988, 1302, 1580, 1617, 2054, 3174, 3304
BspT104I TTCGAA 1 cut(s) 99
BspT107I GGYRCC 2 cut(s) 553, 3148
BspTI CTTAAG 1 cut(s) 2989
BspTNI GGTCTC 1 cut(s) 1350
BsrDI GCAATG 6 cut(s) 273, 623, 1258, 1727, 2307, 2513
BsrI ACTGG 5 cut(s) 691, 1060, 1397, 1426, 2853
BssECI CCNNGG 6 cut(s) 570, 1670, 1671, 2004, 2559, 2880
BssNI GRCGYC 1 cut(s) 989
BssT1I CCWWGG 1 cut(s) 2004
Bst2UI CCWGG 4 cut(s) 393, 1672, 2882, 3153
Bst4CI ACNGT 4 cut(s) 325, 963, 1753, 1987
BstACI GRCGYC 1 cut(s) 989
BstAFI CTTAAG 1 cut(s) 2989
BstAPI GCANNNNNTGC 1 cut(s) 625
BstBI TTCGAA 1 cut(s) 99
BstC8I GCNNGC 7 cut(s) 594, 621, 813, 1160, 2634, 2870, 3045
BstEII GGTNACC 1 cut(s) 2554
BstF5I GGATG 8 cut(s) 222, 730, 855, 1468, 1615, 1681, 1696, 1765
BstFNI CGCG 1 cut(s) 2199
BstMWI GCNNNNNNNGC 9 cut(s) 572, 625, 1184, 1213, 1738, 1868, 2778, 2865, 3033
BstNI CCWGG 4 cut(s) 393, 1672, 2882, 3153
BstNSI RCATGY 4 cut(s) 151, 1243, 1999, 2636
BstPI GGTNACC 1 cut(s) 2554
BstSCI CCNGG 8 cut(s) 391, 569, 756, 1670, 2558, 2880, 3144, 3151
BstSFI CTRYAG 7 cut(s) 357, 1706, 1977, 2191, 2609, 2870, 3096
BstSLI GKGCMC 2 cut(s) 1671, 2650
BstUI CGCG 1 cut(s) 2199
BstV2I GAAGAC 2 cut(s) 462, 2751
BstX2I RGATCY 7 cut(s) 35, 926, 1294, 1381, 1622, 1957, 3166
BstXI CCANNNNNNTGG 3 cut(s) 725, 2495, 2732
BstYI RGATCY 7 cut(s) 35, 926, 1294, 1381, 1622, 1957, 3166
Bsu15I ATCGAT 1 cut(s) 605
Bsu36I CCTNAGG 2 cut(s) 2762, 3162
BsuRI GGCC 3 cut(s) 2169, 2451, 2868
BsuTUI ATCGAT 1 cut(s) 605
BtsCI GGATG 8 cut(s) 222, 730, 855, 1468, 1615, 1681, 1696, 1765
BtsI GCAGTG 1 cut(s) 1548
BtsIMutI CAGTG 4 cut(s) 990, 1419, 1431, 1548
Cac8I GCNNGC 7 cut(s) 594, 621, 813, 1160, 2634, 2870, 3045
CaiI CAGNNNCTG 2 cut(s) 1847, 3244
Cfr13I GGNCC 2 cut(s) 2060, 2686
ClaI ATCGAT 1 cut(s) 605
CseI GACGC 2 cut(s) 86, 978
Csp6I GTAC 4 cut(s) 193, 326, 2582, 2930
CspCI CAANNNNNGTGG 2 cut(s) 1552, 1587
CviQI GTAC 4 cut(s) 193, 326, 2582, 2930
EaeI YGGCCR 1 cut(s) 2449
EciI GGCGGA 1 cut(s) 2660
Ecl136II GAGCTC 1 cut(s) 941
Eco130I CCWWGG 1 cut(s) 2004
Eco24I GRGCYC 2 cut(s) 943, 2234
Eco31I GGTCTC 1 cut(s) 1350
Eco47I GGWCC 2 cut(s) 2060, 2686
Eco53kI GAGCTC 1 cut(s) 941
Eco57I CTGAAG 2 cut(s) 162, 2981
Eco81I CCTNAGG 2 cut(s) 2762, 3162
Eco88I CYCGRG 2 cut(s) 51, 2354
Eco91I GGTNACC 1 cut(s) 2554
EcoICRI GAGCTC 1 cut(s) 941
EcoO109I RGGNCCY 1 cut(s) 2686
EcoO65I GGTNACC 1 cut(s) 2554
EcoRI GAATTC 3 cut(s) 1136, 1894, 2861
EcoRII CCWGG 4 cut(s) 391, 1670, 2880, 3151
EcoT14I CCWWGG 1 cut(s) 2004
EcoT22I ATGCAT 1 cut(s) 1617
EcoT38I GRGCYC 2 cut(s) 943, 2234
ErhI CCWWGG 1 cut(s) 2004
Esp3I CGTCTC 1 cut(s) 996
FalI AAGNNNNNCTT 4 cut(s) 466, 498, 1512, 1544
FaqI GGGAC 1 cut(s) 1748
FblI GTMKAC 1 cut(s) 75
FokI GGATG 8 cut(s) 229, 737, 862, 1475, 1602, 1688, 1703, 1772
FriOI GRGCYC 2 cut(s) 943, 2234
FspBI CTAG 8 cut(s) 33, 39, 630, 1101, 1349, 1545, 1620, 2586
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 3 cut(s) 2169, 2451, 2868
HapII CCGG 8 cut(s) 570, 757, 875, 1460, 1540, 2081, 2559, 3146
HgaI GACGC 2 cut(s) 86, 978
Hin1I GRCGYC 1 cut(s) 989
HincII GTYRAC 3 cut(s) 76, 421, 2098
HindII GTYRAC 3 cut(s) 76, 421, 2098
HindIII AAGCTT 4 cut(s) 348, 590, 813, 2468
HpaII CCGG 8 cut(s) 570, 757, 875, 1460, 1540, 2081, 2559, 3146
HphI GGTGA 4 cut(s) 440, 712, 1272, 3259
Hpy166II GTNNAC 3 cut(s) 76, 421, 2098
Hpy8I GTNNAC 3 cut(s) 76, 421, 2098
Hpy99I CGWCG 2 cut(s) 77, 80
HpyCH4III ACNGT 4 cut(s) 325, 963, 1753, 1987
HpyCH4IV ACGT 3 cut(s) 191, 2029, 2923
HpyF10VI GCNNNNNNNGC 9 cut(s) 572, 625, 1184, 1213, 1738, 1868, 2778, 2865, 3033
HpySE526I ACGT 3 cut(s) 191, 2029, 2923
Hsp92I GRCGYC 1 cut(s) 989
Kpn2I TCCGGA 1 cut(s) 1459
LweI GCATC 6 cut(s) 508, 646, 1453, 1624, 1681, 1858
MaeI CTAG 8 cut(s) 33, 39, 630, 1101, 1349, 1545, 1620, 2586
MaeII ACGT 3 cut(s) 191, 2029, 2923
MaeIII GTNAC 9 cut(s) 559, 953, 1006, 1235, 1270, 1354, 1912, 2161, 2554
MfeI CAATTG 1 cut(s) 2637
MflI RGATCY 7 cut(s) 35, 926, 1294, 1381, 1622, 1957, 3166
MhlI GDGCHC 4 cut(s) 943, 1671, 2234, 2650
MlsI TGGCCA 1 cut(s) 2451
MluNI TGGCCA 1 cut(s) 2451
MlyI GAGTC 8 cut(s) 550, 907, 1138, 1457, 1490, 2804, 3126, 3296
MmeI TCCRAC 1 cut(s) 1871
Mox20I TGGCCA 1 cut(s) 2451
Mph1103I ATGCAT 1 cut(s) 1617
MroI TCCGGA 1 cut(s) 1459
MroXI GAANNNNTTC 1 cut(s) 25
MscI TGGCCA 1 cut(s) 2451
MslI CAYNNNNRTG 3 cut(s) 723, 1685, 2493
Msp20I TGGCCA 1 cut(s) 2451
MspA1I CMGCKG 5 cut(s) 182, 869, 1187, 1847, 2940
MspCI CTTAAG 1 cut(s) 2989
MspI CCGG 8 cut(s) 570, 757, 875, 1460, 1540, 2081, 2559, 3146
MspR9I CCNGG 8 cut(s) 393, 571, 758, 1672, 2560, 2882, 3146, 3153
MunI CAATTG 1 cut(s) 2637
Mva1269I GAATGC 3 cut(s) 755, 1617, 1741
MvaI CCWGG 4 cut(s) 393, 1672, 2882, 3153
MvnI CGCG 1 cut(s) 2199
MwoI GCNNNNNNNGC 9 cut(s) 572, 625, 1184, 1213, 1738, 1868, 2778, 2865, 3033
NciI CCSGG 4 cut(s) 571, 758, 2560, 3146
NlaIV GGNNCC 9 cut(s) 534, 555, 771, 873, 1538, 2231, 2688, 2759, 3150
NmuCI GTSAC 4 cut(s) 559, 953, 1235, 1270
NsiI ATGCAT 1 cut(s) 1617
NspI RCATGY 4 cut(s) 151, 1243, 1999, 2636
NspV TTCGAA 1 cut(s) 99
PaeI GCATGC 1 cut(s) 2636
PaeR7I CTCGAG 1 cut(s) 51
PasI CCCWGGG 1 cut(s) 1671
PciI ACATGT 1 cut(s) 1995
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 1968
PctI GAATGC 3 cut(s) 755, 1617, 1741
PdmI GAANNNNTTC 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 3244
PleI GAGTC 8 cut(s) 549, 906, 1138, 1456, 1489, 2804, 3125, 3295
PpsI GAGTC 8 cut(s) 549, 906, 1138, 1456, 1489, 2804, 3125, 3295
PpuMI RGGWCCY 1 cut(s) 2686
PscI ACATGT 1 cut(s) 1995
PshBI ATTAAT 1 cut(s) 1698
PsiI TTATAA 2 cut(s) 1883, 2261
Psp124BI GAGCTC 1 cut(s) 943
Psp5II RGGWCCY 1 cut(s) 2686
Psp6I CCWGG 4 cut(s) 391, 1670, 2880, 3151
PspEI GGTNACC 1 cut(s) 2554
PspGI CCWGG 4 cut(s) 391, 1670, 2880, 3151
PspN4I GGNNCC 9 cut(s) 534, 555, 771, 873, 1538, 2231, 2688, 2759, 3150
PspPI GGNCC 2 cut(s) 2060, 2686
PspPPI RGGWCCY 1 cut(s) 2686
PsrI GAACNNNNNNTAC 2 cut(s) 2913, 2945
PstI CTGCAG 2 cut(s) 1710, 2874
PstNI CAGNNNCTG 2 cut(s) 1847, 3244
PsuI RGATCY 7 cut(s) 35, 926, 1294, 1381, 1622, 1957, 3166
PvuII CAGCTG 4 cut(s) 182, 1187, 1847, 2940
RsaI GTAC 4 cut(s) 194, 327, 2583, 2931
RsaNI GTAC 4 cut(s) 193, 326, 2582, 2930
RseI CAYNNNNRTG 3 cut(s) 723, 1685, 2493
SacI GAGCTC 1 cut(s) 943
SalI GTCGAC 1 cut(s) 74
Sau96I GGNCC 2 cut(s) 2060, 2686
SbfI CCTGCAGG 1 cut(s) 2874
SchI GAGTC 8 cut(s) 550, 907, 1138, 1457, 1490, 2804, 3126, 3296
ScrFI CCNGG 8 cut(s) 393, 571, 758, 1672, 2560, 2882, 3146, 3153
SdaI CCTGCAGG 1 cut(s) 2874
SduI GDGCHC 4 cut(s) 943, 1671, 2234, 2650
SfaNI GCATC 6 cut(s) 508, 646, 1453, 1624, 1681, 1858
SfcI CTRYAG 7 cut(s) 357, 1706, 1977, 2191, 2609, 2870, 3096
Sfr274I CTCGAG 1 cut(s) 51
SfuI TTCGAA 1 cut(s) 99
SgrDI CGTCGACG 1 cut(s) 74
SinI GGWCC 2 cut(s) 2060, 2686
SlaI CTCGAG 1 cut(s) 51
SmiMI CAYNNNNRTG 3 cut(s) 723, 1685, 2493
SmlI CTYRAG 6 cut(s) 51, 294, 1146, 2952, 2989, 3125
SmoI CTYRAG 6 cut(s) 51, 294, 1146, 2952, 2989, 3125
SphI GCATGC 1 cut(s) 2636
Sse8387I CCTGCAGG 1 cut(s) 2874
SspMI CTAG 8 cut(s) 33, 39, 630, 1101, 1349, 1545, 1620, 2586
SstI GAGCTC 1 cut(s) 943
StyD4I CCNGG 8 cut(s) 391, 569, 756, 1670, 2558, 2880, 3144, 3151
StyI CCWWGG 1 cut(s) 2004
TaaI ACNGT 4 cut(s) 325, 963, 1753, 1987
TaiI ACGT 3 cut(s) 194, 2032, 2926
TatI WGTACW 1 cut(s) 2929
TauI GCSGC 4 cut(s) 599, 1907, 2199, 2758
TscAI CASTG 4 cut(s) 990, 1426, 1438, 1555
TseFI GTSAC 4 cut(s) 559, 953, 1235, 1270
Tsp45I GTSAC 4 cut(s) 559, 953, 1235, 1270
TspGWI ACGGA 3 cut(s) 105, 1101, 3100
TspRI CASTG 4 cut(s) 990, 1426, 1438, 1555
Van91I CCANNNNNTGG 1 cut(s) 3244
Vha464I CTTAAG 1 cut(s) 2989
VpaK11BI GGWCC 2 cut(s) 2060, 2686
VspI ATTAAT 1 cut(s) 1698
XapI RAATTY 5 cut(s) 1136, 1894, 2346, 2861, 3320
XbaI TCTAGA 1 cut(s) 38
XceI RCATGY 4 cut(s) 151, 1243, 1999, 2636
XhoI CTCGAG 1 cut(s) 51
XmiI GTMKAC 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 8 cut(s) 33, 39, 630, 1101, 1349, 1545, 1620, 2586
Zsp2I ATGCAT 1 cut(s) 1617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.