Rh2CG502800

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013571
Physical Location & Seq
Forward (+)
67431299 .. 67437410
6112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG502800.1

Sequence Viewer

Length: 2976 bp
ATGTCATCAGTGTCTTTGAACAAGACAAGTCCTTCTAGAAGTAGCTCTTCTAGATCAAAACATGGGGCTCATGTGGTTTCGCAGACTCCCATTGATGCAAAGCTAGATGTAGACTTCAGAGAATCTGAACGGTCGTTTGATTACTCCGCCTCAGTTGACTGTAACATCTCAAGTTCAACTAGCAATGTCCCCTCCGCCGCTGTATCGGCTTACCTCCGGAATATGCAGAGAGGCCGGCTCATTCAGCCATTTGGTTGCTTGATTGCTATTGATGAGCAAAACTTCAGTGTTCTTGCCTACAGTGAAAATGCCCCAGAAATGTTGGACTTGGCCCCCCATACTGTTCCAAATATTGGGCAGCAAGAAGCTTTGACTTTTGGAACAGATGTTCGCACGCTCTTTCAGTCCCCAGGTGCTGCTGCATTGCAGAAAGCAGCTAATCATGGGGAAGTCAATCTTCTCAATCCCATATTGGTGCATTGTAAAACCTCGGGTAAGCCCTTTTATGCAATTCTGCATCGAGTTGATGTTGGCTTAGTAATAGATTTAGAACCAGTAGGTCAAGATGATGTTCCGGTCACTGCTGCGGGGGCATTGAAATCTTATAAGCTTGCAGCCAAAGCCATCTCAAGATTGCAGTCCTTGCCGAGTGGGGATATATCATTGTTATGTGATGTTATAGTGAAGGAAGTTAGTCATTTGACGGGGTATGATCGCACGATGGTGTATAAATTTCATGAAGATGAACATGGGGAAGTTGTTGCTGAGTGCCATAGACCTGACCTGGAACCTTATCTGGGTTTGCACTACCCAGCCACTGATATACCACAGGCTTCAAGATTCCTCTTTATGAAGAACAAAGTTAGGATGATATGTGATTGTTTTGCCCCTTCAGTTAAAGTAATTCAAGACAAAACATTAGCTCAGCCATTGAGTCTTTGTGGATCAGCATTGAGGTCTCCTCATGATTGTCATGCACAGTATATGGCAAACATGGGTTCTGTTGCATCTCTTGTAATGTCTGTGACAATCAATGGTGACGATAGTGACGATGGTGAGATGGAGCATGATCAGCAGAAGGGAAGAAAATTGTGGGGTTTAGTGGTCTGCCATCACACAACTCCTAGATTTGTTCCGTTTCCTTTAAGGTACGCATGTGAGTTTTTGATGCAAGTCTTTGCTGTACAGATCCACAAAGAAGTGGAGTTGGCTGCTCAGTCAAGGGAGAAACATATAATGCAAACACAATCTCTGCTTTGTGACATGCTCCTTAGGGATGCCCCTCTAGGTATTGTTACTCAATCACCTAATGTGATGGATCTTGTTAAGTGTGATGGAGCTGCACTGTATTACAGAAAGAAAGTGTGGTTACTTGGGGTCACCCCATCCGAGGCACAAGTTGGAGATATTGCTGCATGGCTTCTTGAATACCATAGTGAGAGCACAGGCCTAAGTACTGATAGCCTTATGGAAGCTGGCTATCCAGGTGCTTCAGATCTTGGCGATGAAGTTTGTGGAATGGCTGCGATTAGAATTACTTCAATGGACTTCCTGTTTTGGTTTCGGTCCCACACTGCAAAGGAAATCAAGTGGAGCGGTGCAAAGCATGATCCTGATGAGAAGGACGATGGAAGAAAGATGCACCCCAGGTCATCATTCAAGGCTTTTTTGGAGGTAGTTAAGCGACGAAGCATACCATGGGAAGATGTTGAAATGGATGTCATCCATTCTTTACAGCTGATATTGAGAGAATCATTGCAAGACAATATTGTGGATGATTCCAAAATGATTGTGACTGGTCCATCAGTTGATGACAGGATGCAGAGAGTGGATGAATTGCGTGTTGCCACAACTGAAATGGTTCGGCTTATTGAGACAGCTGCAGTTCCCATTTTTGCTGTTGATGCTACTGGTAATATAAATGGGTGGAATAACAAGGCAGCTGAACTAACAGGATTGGCTGTTGAGCAAGCTATTGGTAGGCCATTAGTTGATATTGTGGGGGATGATTCAATTGAAGTGGTGAAGAACATGCTCACATTTGCATTGCAAGGCGTCGAGAGGCAAAATGTTGAAATCAAATTGAAAACATTTGGTCATCAAGAAAATGGCAGTCTTACAATCTTGGTGGTTAATGCATGTTGTAGCCGAGATATAAAGGAAGATGTTGTTGGGGTTTGCTTTGTTGCCCAAGATCTTACAAGAGAAAAGATTGTTAAGGACAAATACACTCGTTTGCTAGGTGATTATGTTGGAATAGTGCAAACACCTTCTGCACTGATTCCTCCAATATTTATGACCGATGAAAACTGTCATTGCTCGGAATGGAATGATGCTATGCAAAATTTGTCTGGTTTGCGAAGGGAAGAAGCTGTTGGTCGAGCGCTCCTTGGGGAAGTCTTCACAGTTAGCAATTTTGGCTGTCGTGTTAAAGATCATGACACATTAACCAAGCTTAGGATACTGCTGAATGGAGTACTTGCAGGCCAGGATGCTTGTAAATTGTTTTTCGGATTTTTTGATCGGCAGGGTAATTACGTTGAAGCATTACTTTCTGCTAACAAGAGAAGTGATGAAGAAGGAAGGATAACTGGGGTATTGTGCTTTATATATGTTGCTAGTCCAGAGCTTCAGTATGCTATGCAGGTGCAAAGAATAGCAGAGCAGGCTGCAGCTGATAGTCTTAGGAAAGTGGCCTATATTCGTCAAGAAATCAAAAAGCCTCTAAGTGGGATTATGCTAATGCAAAATCTAATGGGGTCTTCTAATTTAAGCAAAGAGCAGCAGCAGCTACATAAGAAGAGCACATTGTGTCGGGAACAATTGACCAAGATTGTTGATGACACTGATGTTGAAAGTATGGAGGAGTGGTATGTTCTTTTTTGTTTTGTCTTTTCAATAGAGATATTGCATAATTGTCAAGTCAATAACCACACTTGTTTCAATATCATGTTAGATGGTAACAACTATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

991

Amino Acids

110.11

Weight (kDa)

5.5

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 70 - 186 1.5e-36 PAS fold
GAF PF01590 220 - 397 3.7e-17 GAF domain
PHY PF00360 413 - 588 9.9e-57 Phytochrome region
PAS PF00989 619 - 732 1.2e-23 PAS fold
PAS_4 PF08448 628 - 737 2.1e-08 PAS fold
PAS PF00989 749 - 870 1.8e-14 PAS fold
HisKA PF00512 898 - 955 8.6e-06 His Kinase A (phospho-acceptor) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013571)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35840
fragaria_vesca FvH4_6g40650 FvH4_6g40650 FvH4_6g40650
malus_domestica MD09G1126400.v1.1
prunus_persica Prupe.3G198200_v2.0.a1 Prupe.3G198200_v2.0.a1
pyrus_communis pycom09g05070 pycom17g10740
rosa_chinensis RchiOBHm_Chr2g0156021
rosa_laevigata RLG00000020882
rosa_multiflora Rmu_sc0011922.1_g000002
rosa_rugosa Rorug02G0451300
rosa_samantha Rh2AG518100 Rh2BG529300 Rh2CG502800 Rh2DG538400
rosa_wichuraiana Rw2G042660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
AarI CACCTGC 1 cut(s) 2635
Acc36I ACCTGC 1 cut(s) 2635
AccB7I CCANNNNNTGG 1 cut(s) 353
AccBSI CCGCTC 1 cut(s) 1596
AccI GTMKAC 1 cut(s) 111
AccIII TCCGGA 1 cut(s) 216
AciI CCGC 5 cut(s) 147, 195, 198, 587, 1596
AclWI GGATC 4 cut(s) 952, 1183, 1326, 1604
AcsI RAATTY 2 cut(s) 731, 2344
AcuI CTGAAG 5 cut(s) 100, 268, 876, 1476, 2615
AcyI GRCGYC 1 cut(s) 2055
AdeI CACNNNGTG 1 cut(s) 2811
AfaI GTAC 4 cut(s) 1151, 1185, 1456, 2478
AfeI AGCGCT 1 cut(s) 2385
AfiI CCNNNNNNNGG 5 cut(s) 353, 797, 1390, 2457, 2729
AjnI CCWGG 5 cut(s) 409, 783, 1483, 1646, 2487
AjuI GAANNNNNNNTTGG 4 cut(s) 2154, 2186, 2358, 2390
AleI CACNNNNGTG 1 cut(s) 722
AloI GAACNNNNNNTCC 2 cut(s) 372, 404
Alw21I GWGCWC 2 cut(s) 1445, 2807
Alw26I GTCTC 2 cut(s) 963, 1868
AlwI GGATC 4 cut(s) 952, 1183, 1326, 1604
AlwNI CAGNNNCTG 2 cut(s) 416, 818
Ama87I CYCGRG 1 cut(s) 490
Aor13HI TCCGGA 1 cut(s) 216
Aor51HI AGCGCT 1 cut(s) 2385
AoxI GGCC 6 cut(s) 232, 330, 1447, 1982, 2485, 2694
ApoI RAATTY 2 cut(s) 731, 2344
Asp700I GAANNNNTTC 2 cut(s) 1537, 1860
AspLEI GCGC 1 cut(s) 2386
AspS9I GGNCC 3 cut(s) 331, 1566, 1799
AsuHPI GGTGA 6 cut(s) 1049, 1067, 1296, 1372, 2035, 2255
AvaI CYCGRG 1 cut(s) 490
AvaII GGWCC 2 cut(s) 1566, 1799
AxyI CCTNAGG 1 cut(s) 1271
BaeI ACNNNNGTAYC 2 cut(s) 1141, 1174
BanII GRGCYC 1 cut(s) 70
BbsI GAAGAC 2 cut(s) 2392, 2754
Bbv12I GWGCWC 2 cut(s) 1445, 2807
BciT130I CCWGG 5 cut(s) 411, 785, 1485, 1648, 2489
BciVI GTATCC 1 cut(s) 2454
BclI TGATCA 1 cut(s) 1069
BcoDI GTCTC 2 cut(s) 963, 1868
BfaI CTAG 8 cut(s) 36, 51, 104, 180, 1125, 1286, 2240, 2619
BfmI CTRYAG 3 cut(s) 298, 1881, 2670
BfoI RGCGCY 1 cut(s) 2387
BfuAI ACCTGC 1 cut(s) 2635
BfuI GTATCC 1 cut(s) 2454
BglII AGATCT 2 cut(s) 1495, 2194
BlpI GCTNAGC 1 cut(s) 924
BmcAI AGTACT 2 cut(s) 1456, 2478
Bme1390I CCNGG 5 cut(s) 411, 785, 1485, 1648, 2489
Bme18I GGWCC 2 cut(s) 1566, 1799
BmeT110I CYCGRG 1 cut(s) 490
BmgT120I GGNCC 3 cut(s) 331, 1566, 1799
BmiI GGNNCC 3 cut(s) 333, 789, 1568
BmrFI CCNGG 5 cut(s) 411, 785, 1485, 1648, 2489
BmrI ACTGGG 1 cut(s) 2601
BmuI ACTGGG 1 cut(s) 2601
BpiI GAAGAC 2 cut(s) 2392, 2754
BplI GAGNNNNNCTC 4 cut(s) 222, 254, 946, 978
Bpu10I CCTNAGC 1 cut(s) 2456
Bpu1102I GCTNAGC 1 cut(s) 924
BpuEI CTTGAG 2 cut(s) 154, 613
BsaHI GRCGYC 1 cut(s) 2055
BsaI GGTCTC 1 cut(s) 963
BsaJI CCNNGG 6 cut(s) 409, 489, 1389, 1646, 1697, 2389
BsaWI WCCGGW 2 cut(s) 216, 574
BsaXI ACNNNNNCTCC 2 cut(s) 2855, 2885
Bsc4I CCNNNNNNNGG 5 cut(s) 353, 797, 1390, 2457, 2729
Bse118I RCCGGY 1 cut(s) 234
Bse1I ACTGG 4 cut(s) 554, 1801, 1915, 2596
Bse21I CCTNAGG 1 cut(s) 1271
Bse3DI GCAATG 5 cut(s) 190, 422, 1754, 2045, 2314
BseAI TCCGGA 1 cut(s) 216
BseBI CCWGG 5 cut(s) 411, 785, 1485, 1648, 2489
BseDI CCNNGG 6 cut(s) 409, 489, 1389, 1646, 1697, 2389
BseLI CCNNNNNNNGG 5 cut(s) 353, 797, 1390, 2457, 2729
BseMI GCAATG 5 cut(s) 190, 422, 1754, 2045, 2314
BseMII CTCAG 4 cut(s) 165, 756, 938, 1229
BseNI ACTGG 4 cut(s) 554, 1801, 1915, 2596
BseRI GAGGAG 2 cut(s) 951, 2879
BseYI CCCAGC 1 cut(s) 811
BsgI GTGCAG 2 cut(s) 1326, 2259
Bsh1285I CGRYCG 1 cut(s) 134
BshFI GGCC 6 cut(s) 234, 332, 1449, 1984, 2487, 2696
BsiEI CGRYCG 1 cut(s) 134
BsiHKAI GWGCWC 2 cut(s) 1445, 2807
BsiHKCI CYCGRG 1 cut(s) 490
BsiSI CCGG 3 cut(s) 217, 235, 575
BslFI GGGAC 3 cut(s) 173, 391, 1552
BslI CCNNNNNNNGG 5 cut(s) 353, 797, 1390, 2457, 2729
BsmAI GTCTC 2 cut(s) 963, 1868
BsmFI GGGAC 3 cut(s) 173, 391, 1552
BsnI GGCC 6 cut(s) 234, 332, 1449, 1984, 2487, 2696
Bso31I GGTCTC 1 cut(s) 963
BsoBI CYCGRG 1 cut(s) 490
Bsp1286I GDGCHC 3 cut(s) 70, 1445, 2807
Bsp13I TCCGGA 1 cut(s) 216
Bsp1407I TGTACA 1 cut(s) 1183
Bsp1720I GCTNAGC 1 cut(s) 924
Bsp19I CCATGG 1 cut(s) 1697
BspACI CCGC 5 cut(s) 147, 195, 198, 587, 1596
BspANI GGCC 6 cut(s) 234, 332, 1449, 1984, 2487, 2696
BspCNI CTCAG 4 cut(s) 164, 757, 937, 1228
BspEI TCCGGA 1 cut(s) 216
BspHI TCATGA 3 cut(s) 736, 964, 2437
BspLI GGNNCC 3 cut(s) 333, 789, 1568
BspMAI CTGCAG 2 cut(s) 1885, 2674
BspMI ACCTGC 1 cut(s) 2635
BspPI GGATC 4 cut(s) 952, 1183, 1326, 1604
BspQI GCTCTTC 2 cut(s) 52, 2795
BspTNI GGTCTC 1 cut(s) 963
BsrBI CCGCTC 1 cut(s) 1596
BsrDI GCAATG 5 cut(s) 190, 422, 1754, 2045, 2314
BsrFI RCCGGY 1 cut(s) 234
BsrGI TGTACA 1 cut(s) 1183
BsrI ACTGG 4 cut(s) 554, 1801, 1915, 2596
BssAI RCCGGY 1 cut(s) 234
BssECI CCNNGG 6 cut(s) 409, 489, 1389, 1646, 1697, 2389
BssNI GRCGYC 1 cut(s) 2055
BssT1I CCWWGG 2 cut(s) 1697, 2389
Bst2UI CCWGG 5 cut(s) 411, 785, 1485, 1648, 2489
Bst4CI ACNGT 8 cut(s) 132, 161, 302, 343, 981, 1347, 2312, 2407
Bst6I CTCTTC 2 cut(s) 52, 2795
BstACI GRCGYC 1 cut(s) 2055
BstAPI GCANNNNNTGC 1 cut(s) 643
BstAUI TGTACA 1 cut(s) 1183
BstC8I GCNNGC 7 cut(s) 236, 395, 612, 1477, 1971, 2485, 2667
BstDSI CCRYGG 1 cut(s) 1697
BstEII GGTNACC 1 cut(s) 1378
BstH2I RGCGCY 1 cut(s) 2387
BstHHI GCGC 1 cut(s) 2386
BstMAI GTCTC 2 cut(s) 963, 1868
BstMCI CGRYCG 1 cut(s) 134
BstNI CCWGG 5 cut(s) 411, 785, 1485, 1648, 2489
BstNSI RCATGY 4 cut(s) 1158, 1267, 2035, 2142
BstPI GGTNACC 1 cut(s) 1378
BstSCI CCNGG 5 cut(s) 409, 783, 1483, 1646, 2487
BstSFI CTRYAG 3 cut(s) 298, 1881, 2670
BstV2I GAAGAC 2 cut(s) 2392, 2754
BstX2I RGATCY 4 cut(s) 1188, 1318, 1495, 2194
BstYI RGATCY 4 cut(s) 1188, 1318, 1495, 2194
Bsu36I CCTNAGG 1 cut(s) 1271
BsuI GTATCC 1 cut(s) 2454
BsuRI GGCC 6 cut(s) 234, 332, 1449, 1984, 2487, 2696
BtgI CCRYGG 1 cut(s) 1697
BtgZI GCGATG 1 cut(s) 1518
BtsI GCAGTG 2 cut(s) 579, 1572
BtsIMutI CAGTG 9 cut(s) 15, 292, 307, 579, 816, 1343, 1572, 2276, 2844
BveI ACCTGC 1 cut(s) 2635
Cac8I GCNNGC 7 cut(s) 236, 395, 612, 1477, 1971, 2485, 2667
CaiI CAGNNNCTG 2 cut(s) 416, 818
CciI TCATGA 3 cut(s) 736, 964, 2437
CfoI GCGC 1 cut(s) 2386
Cfr10I RCCGGY 1 cut(s) 234
Cfr13I GGNCC 3 cut(s) 331, 1566, 1799
CseI GACGC 1 cut(s) 2044
Csp6I GTAC 4 cut(s) 1150, 1184, 1455, 2477
CspCI CAANNNNNGTGG 4 cut(s) 2001, 2036, 2109, 2144
CviQI GTAC 4 cut(s) 1150, 1184, 1455, 2477
DraIII CACNNNGTG 1 cut(s) 2811
Eam1104I CTCTTC 2 cut(s) 52, 2795
EarI CTCTTC 2 cut(s) 52, 2795
EciI GGCGGA 2 cut(s) 136, 184
Eco130I CCWWGG 2 cut(s) 1697, 2389
Eco147I AGGCCT 1 cut(s) 1449
Eco24I GRGCYC 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 963
Eco47I GGWCC 2 cut(s) 1566, 1799
Eco47III AGCGCT 1 cut(s) 2385
Eco57I CTGAAG 5 cut(s) 100, 268, 876, 1476, 2615
Eco81I CCTNAGG 1 cut(s) 1271
Eco88I CYCGRG 1 cut(s) 490
Eco91I GGTNACC 1 cut(s) 1378
EcoO65I GGTNACC 1 cut(s) 1378
EcoRII CCWGG 5 cut(s) 409, 783, 1483, 1646, 2487
EcoT14I CCWWGG 2 cut(s) 1697, 2389
EcoT22I ATGCAT 1 cut(s) 2140
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 2 cut(s) 1697, 2389
FalI AAGNNNNNCTT 6 cut(s) 31, 63, 441, 473, 2535, 2567
FaqI GGGAC 3 cut(s) 173, 391, 1552
FauI CCCGC 1 cut(s) 580
FbaI TGATCA 1 cut(s) 1069
FblI GTMKAC 1 cut(s) 111
FriOI GRGCYC 1 cut(s) 70
FspBI CTAG 8 cut(s) 36, 51, 104, 180, 1125, 1286, 2240, 2619
GlaI GCGC 1 cut(s) 2385
GsaI CCCAGC 1 cut(s) 815
HaeII RGCGCY 1 cut(s) 2387
HaeIII GGCC 6 cut(s) 234, 332, 1449, 1984, 2487, 2696
HapII CCGG 3 cut(s) 217, 235, 575
HgaI GACGC 1 cut(s) 2044
HhaI GCGC 1 cut(s) 2386
Hin1I GRCGYC 1 cut(s) 2055
Hin6I GCGC 1 cut(s) 2384
HinP1I GCGC 1 cut(s) 2384
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HindIII AAGCTT 3 cut(s) 366, 608, 2453
HinfI GANTC 8 cut(s) 85, 122, 840, 934, 1751, 1778, 2009, 2281
HpaII CCGG 3 cut(s) 217, 235, 575
HphI GGTGA 6 cut(s) 1049, 1067, 1296, 1372, 2035, 2255
Hpy166II GTNNAC 2 cut(s) 112, 157
Hpy188I TCNGA 6 cut(s) 119, 127, 1390, 1495, 2323, 2513
Hpy8I GTNNAC 2 cut(s) 112, 157
Hpy99I CGWCG 2 cut(s) 1689, 2060
HpyAV CCTTC 9 cut(s) 42, 679, 900, 1072, 1615, 2280, 2355, 2573, 2577
HpyCH4III ACNGT 8 cut(s) 132, 161, 302, 343, 981, 1347, 2312, 2407
HpyCH4IV ACGT 1 cut(s) 2538
HpySE526I ACGT 1 cut(s) 2538
Hsp92I GRCGYC 1 cut(s) 2055
HspAI GCGC 1 cut(s) 2384
Kpn2I TCCGGA 1 cut(s) 216
KroI GCCGGC 1 cut(s) 234
KroNI GCCGGC 1 cut(s) 236
Ksp22I TGATCA 1 cut(s) 1069
LguI GCTCTTC 2 cut(s) 52, 2795
LmnI GCTCC 5 cut(s) 1063, 1272, 1337, 1593, 2391
MaeI CTAG 8 cut(s) 36, 51, 104, 180, 1125, 1286, 2240, 2619
MaeII ACGT 1 cut(s) 2538
MbiI CCGCTC 1 cut(s) 1596
MfeI CAATTG 2 cut(s) 2013, 2822
MflI RGATCY 4 cut(s) 1188, 1318, 1495, 2194
MhlI GDGCHC 3 cut(s) 70, 1445, 2807
MlyI GAGTC 2 cut(s) 79, 943
MmeI TCCRAC 3 cut(s) 303, 1381, 2233
Mph1103I ATGCAT 1 cut(s) 2140
MroI TCCGGA 1 cut(s) 216
MroNI GCCGGC 1 cut(s) 234
MroXI GAANNNNTTC 2 cut(s) 1537, 1860
MseI TTAA 9 cut(s) 897, 1145, 1326, 1680, 2133, 2217, 2430, 2447, 2771
MslI CAYNNNNRTG 4 cut(s) 473, 667, 722, 741
MspA1I CMGCKG 5 cut(s) 200, 1738, 1880, 1943, 2675
MspI CCGG 3 cut(s) 217, 235, 575
MspR9I CCNGG 5 cut(s) 411, 785, 1485, 1648, 2489
MunI CAATTG 2 cut(s) 2013, 2822
MvaI CCWGG 5 cut(s) 411, 785, 1485, 1648, 2489
NaeI GCCGGC 1 cut(s) 236
NcoI CCATGG 1 cut(s) 1697
NgoMIV GCCGGC 1 cut(s) 234
NlaIV GGNNCC 3 cut(s) 333, 789, 1568
NmeAIII GCCGAG 2 cut(s) 672, 2174
NmuCI GTSAC 7 cut(s) 577, 1024, 1037, 1046, 1259, 1378, 1792
NsiI ATGCAT 1 cut(s) 2140
NspI RCATGY 4 cut(s) 1158, 1267, 2035, 2142
OliI CACNNNNGTG 1 cut(s) 722
PagI TCATGA 3 cut(s) 736, 964, 2437
PaqCI CACCTGC 1 cut(s) 2635
PceI AGGCCT 1 cut(s) 1449
PciSI GCTCTTC 2 cut(s) 52, 2795
PcsI WCGNNNNNNNCGW 1 cut(s) 1047
PdiI GCCGGC 1 cut(s) 236
PdmI GAANNNNTTC 2 cut(s) 1537, 1860
PfeI GAWTC 6 cut(s) 122, 840, 1751, 1778, 2009, 2281
PflMI CCANNNNNTGG 1 cut(s) 353
PleI GAGTC 2 cut(s) 79, 942
PpsI GAGTC 2 cut(s) 79, 942
PsiI TTATAA 1 cut(s) 606
Psp6I CCWGG 5 cut(s) 409, 783, 1483, 1646, 2487
PspEI GGTNACC 1 cut(s) 1378
PspFI CCCAGC 1 cut(s) 811
PspGI CCWGG 5 cut(s) 409, 783, 1483, 1646, 2487
PspN4I GGNNCC 3 cut(s) 333, 789, 1568
PspPI GGNCC 3 cut(s) 331, 1566, 1799
PstI CTGCAG 2 cut(s) 1885, 2674
PstNI CAGNNNCTG 2 cut(s) 416, 818
PsuI RGATCY 4 cut(s) 1188, 1318, 1495, 2194
PvuII CAGCTG 4 cut(s) 1738, 1880, 1943, 2675
RsaI GTAC 4 cut(s) 1151, 1185, 1456, 2478
RsaNI GTAC 4 cut(s) 1150, 1184, 1455, 2477
RseI CAYNNNNRTG 4 cut(s) 473, 667, 722, 741
SapI GCTCTTC 2 cut(s) 52, 2795
SaqAI TTAA 9 cut(s) 897, 1145, 1326, 1680, 2133, 2217, 2430, 2447, 2771
Sau96I GGNCC 3 cut(s) 331, 1566, 1799
ScaI AGTACT 2 cut(s) 1456, 2478
SchI GAGTC 2 cut(s) 79, 943
ScrFI CCNGG 5 cut(s) 411, 785, 1485, 1648, 2489
SduI GDGCHC 3 cut(s) 70, 1445, 2807
SfcI CTRYAG 3 cut(s) 298, 1881, 2670
SinI GGWCC 2 cut(s) 1566, 1799
SmiMI CAYNNNNRTG 4 cut(s) 473, 667, 722, 741
SmlI CTYRAG 2 cut(s) 169, 628
SmoI CTYRAG 2 cut(s) 169, 628
SseBI AGGCCT 1 cut(s) 1449
SsiI CCGC 5 cut(s) 147, 195, 198, 587, 1596
SspI AATATT 3 cut(s) 352, 1768, 2292
SspMI CTAG 8 cut(s) 36, 51, 104, 180, 1125, 1286, 2240, 2619
StuI AGGCCT 1 cut(s) 1449
StyD4I CCNGG 5 cut(s) 409, 783, 1483, 1646, 2487
StyI CCWWGG 2 cut(s) 1697, 2389
TaaI ACNGT 8 cut(s) 132, 161, 302, 343, 981, 1347, 2312, 2407
TaiI ACGT 1 cut(s) 2541
TaqI TCGA 3 cut(s) 520, 2058, 2380
TaqII GACCGA 2 cut(s) 1554, 2315
TatI WGTACW 3 cut(s) 1183, 1454, 2476
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 6 cut(s) 122, 840, 1751, 1778, 2009, 2281
Tru1I TTAA 9 cut(s) 897, 1145, 1326, 1680, 2133, 2217, 2430, 2447, 2771
Tru9I TTAA 9 cut(s) 897, 1145, 1326, 1680, 2133, 2217, 2430, 2447, 2771
TscAI CASTG 9 cut(s) 15, 292, 307, 586, 823, 1350, 1579, 2283, 2851
TseFI GTSAC 7 cut(s) 577, 1024, 1037, 1046, 1259, 1378, 1792
Tsp45I GTSAC 7 cut(s) 577, 1024, 1037, 1046, 1259, 1378, 1792
TspDTI ATGAA 8 cut(s) 725, 753, 759, 866, 1521, 1848, 2319, 2589
TspGWI ACGGA 1 cut(s) 1125
TspRI CASTG 9 cut(s) 15, 292, 307, 586, 823, 1350, 1579, 2283, 2851
Van91I CCANNNNNTGG 1 cut(s) 353
VpaK11BI GGWCC 2 cut(s) 1566, 1799
XapI RAATTY 2 cut(s) 731, 2344
XbaI TCTAGA 2 cut(s) 35, 50
XceI RCATGY 4 cut(s) 1158, 1267, 2035, 2142
XcmI CCANNNNNNNNNTGG 1 cut(s) 1855
XmiI GTMKAC 1 cut(s) 111
XmnI GAANNNNTTC 2 cut(s) 1537, 1860
XspI CTAG 8 cut(s) 36, 51, 104, 180, 1125, 1286, 2240, 2619
ZrmI AGTACT 2 cut(s) 1456, 2478
Zsp2I ATGCAT 1 cut(s) 2140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.