Rorug02G0451300

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013571
Physical Location & Seq
Forward (+)
57881536 .. 57882487
952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0451300.1

Sequence Viewer

Length: 867 bp
ATGGGCAAGCTCTCCAAGGCCGAGAAGAAGATCAACTACGACGCCAAGCTCTGCAAGCTTCTCGAGGACTATGGCCAGGTGCTCATCGTCACCGCCGATAACGTCGGCTCCAATCAGCTCCAGAACATCCGCAAGGGTCTTCGCGGAGACTCCACTGTGCTCATGGGAAAGAACACCATGATGAAGAGGTCCATCAAGATTCATGCTGCCAAGACCGTGAGGAGGTTGCTAATTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTCGTTGTTCCTCCTGGCAACACTGGTCTCGACCCATCCCAGACATCTTTCTTCCAGGTGCTTAACATTCCAACCAAGATTAACAAGGGTACTGTGGAAATCATTACCCCTGTTGAACTTATCAGGAAGGGTGACAAGGTTGGGTCTTCTGAGGCTGCCCTTCTTGCCAAGCTCGGGATCAGGCCATTCTCTTATGGTCTTGTTGTCCAGATGGTGTATGACAATGGATCTGTCTTCAGCCCAGAGGTGCTTAATCTTACTGAGGATGATCTCATGATTAAGTTTGCTTCTGGTGTCTCCAATGTCACAGCATTGGCACTGGCCATTTCCTACCCAGCAATTGCAGCTGCACCACATATGTTCCTCAATGCCTACAACAATGTGTTGGCAATTGCTGTGGCTACTGAGTATTCCTTCCCTCAAGCTGATAAGGTCAAGGAGTATCTGGAGGATCCCTCCAAGTTTGCTGTTGCTGTGGCTGCTCCTGCCGCAGCTGCCGGTGGTGCTGCTGCAGAGGAAGCAAAGAAGGAAGAGCCTGCTGAGGAGTCCGATGATGACATGGGTTTCAGTTTGTTCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

288

Amino Acids

30.78

Weight (kDa)

6.77

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L10 PF00466 6 - 79 6.7e-12 Ribosomal protein L10
RL10P_insert PF17777 86 - 155 1.1e-21 Insertion domain in 60S ribosomal protein L10P
Ribosomal_60s PF00428 207 - 287 6.1e-20 60s Acidic ribosomal protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013571)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35840
fragaria_vesca FvH4_6g40650 FvH4_6g40650 FvH4_6g40650
malus_domestica MD09G1126400.v1.1
prunus_persica Prupe.3G198200_v2.0.a1 Prupe.3G198200_v2.0.a1
pyrus_communis pycom09g05070 pycom17g10740
rosa_chinensis RchiOBHm_Chr2g0156021
rosa_laevigata RLG00000020882
rosa_multiflora Rmu_sc0011922.1_g000002
rosa_rugosa Rorug02G0451300
rosa_samantha Rh2AG518100 Rh2BG529300 Rh2CG502800 Rh2DG538400
rosa_wichuraiana Rw2G042660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 144
AciI CCGC 4 cut(s) 93, 130, 144, 774
AclWI GGATC 4 cut(s) 470, 520, 731, 744
AcoI YGGCCR 2 cut(s) 73, 606
AcuI CTGAAG 1 cut(s) 505
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 2 cut(s) 239, 376
AfiI CCNNNNNNNGG 2 cut(s) 222, 459
AgsI TTSAA 1 cut(s) 401
AjnI CCWGG 3 cut(s) 75, 298, 339
AluBI AGCT 9 cut(s) 10, 49, 58, 118, 251, 457, 632, 710, 779
AluI AGCT 9 cut(s) 10, 49, 58, 118, 251, 457, 632, 710, 779
Alw21I GWGCWC 3 cut(s) 84, 162, 253
Alw26I GTCTC 3 cut(s) 141, 317, 586
AlwI GGATC 4 cut(s) 470, 520, 731, 744
Ama87I CYCGRG 2 cut(s) 62, 458
AoxI GGCC 4 cut(s) 18, 73, 467, 606
ApeKI GCWGC 9 cut(s) 206, 440, 629, 632, 764, 776, 779, 791, 794
AspS9I GGNCC 1 cut(s) 189
AsuHPI GGTGA 2 cut(s) 82, 428
AvaI CYCGRG 2 cut(s) 62, 458
AvaII GGWCC 1 cut(s) 189
BalI TGGCCA 2 cut(s) 75, 608
BamHI GGATCC 1 cut(s) 736
BanII GRGCYC 1 cut(s) 253
BarI GAAGNNNNNNTAC 2 cut(s) 20, 52
BauI CACGAG 1 cut(s) 258
BbsI GAAGAC 3 cut(s) 131, 423, 511
Bbv12I GWGCWC 3 cut(s) 84, 162, 253
BbvCI CCTCAGC 1 cut(s) 825
BbvI GCAGC 9 cut(s) 193, 427, 619, 641, 751, 766, 778, 781, 788
BccI CCATC 3 cut(s) 200, 328, 490
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BciT130I CCWGG 3 cut(s) 77, 300, 341
BcoDI GTCTC 3 cut(s) 141, 317, 586
BfmI CTRYAG 1 cut(s) 795
Bme1390I CCNGG 3 cut(s) 77, 300, 341
Bme18I GGWCC 1 cut(s) 189
BmeT110I CYCGRG 2 cut(s) 62, 458
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 2 cut(s) 109, 738
BmrFI CCNGG 3 cut(s) 77, 300, 341
BpiI GAAGAC 3 cut(s) 131, 423, 511
BplI GAGNNNNNCTC 2 cut(s) 725, 757
BpmI CTGGAG 2 cut(s) 104, 752
Bpu10I CCTNAGC 1 cut(s) 825
BpuEI CTTGAG 1 cut(s) 690
BsaHI GRCGYC 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 15
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 459
Bse118I RCCGGY 1 cut(s) 782
Bse1I ACTGG 2 cut(s) 313, 609
BseBI CCWGG 3 cut(s) 77, 300, 341
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 3 cut(s) 126, 320, 556
BseLI CCNNNNNNNGG 2 cut(s) 222, 459
BseMII CTCAG 4 cut(s) 426, 537, 681, 816
BseNI ACTGG 2 cut(s) 313, 609
BseRI GAGGAG 2 cut(s) 235, 842
BseXI GCAGC 9 cut(s) 193, 427, 619, 641, 751, 766, 778, 781, 788
BseYI CCCAGC 1 cut(s) 619
BsgI GTGCAG 1 cut(s) 618
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 4 cut(s) 20, 75, 469, 608
BsiHKAI GWGCWC 3 cut(s) 84, 162, 253
BsiHKCI CYCGRG 2 cut(s) 62, 458
BsiSI CCGG 1 cut(s) 783
BslI CCNNNNNNNGG 2 cut(s) 222, 459
BsmAI GTCTC 3 cut(s) 141, 317, 586
BsnI GGCC 4 cut(s) 20, 75, 469, 608
Bso31I GGTCTC 1 cut(s) 317
BsoBI CYCGRG 2 cut(s) 62, 458
Bsp1286I GDGCHC 3 cut(s) 84, 162, 253
Bsp143I GATC 5 cut(s) 30, 462, 512, 553, 736
BspACI CCGC 4 cut(s) 93, 130, 144, 774
BspANI GGCC 4 cut(s) 20, 75, 469, 608
BspCNI CTCAG 4 cut(s) 427, 538, 682, 817
BspFNI CGCG 1 cut(s) 144
BspHI TCATGA 1 cut(s) 558
BspLI GGNNCC 2 cut(s) 109, 738
BspMAI CTGCAG 1 cut(s) 799
BspPI GGATC 4 cut(s) 470, 520, 731, 744
BspQI GCTCTTC 1 cut(s) 810
BspTNI GGTCTC 1 cut(s) 317
BsrFI RCCGGY 1 cut(s) 782
BsrI ACTGG 2 cut(s) 313, 609
BssAI RCCGGY 1 cut(s) 782
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 5 cut(s) 30, 462, 512, 553, 736
BssNI GRCGYC 1 cut(s) 42
BssSI CACGAG 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 15
Bst2BI CACGAG 1 cut(s) 258
Bst2UI CCWGG 3 cut(s) 77, 300, 341
Bst4CI ACNGT 3 cut(s) 157, 217, 379
Bst6I CTCTTC 2 cut(s) 179, 810
BstACI GRCGYC 1 cut(s) 42
BstC8I GCNNGC 3 cut(s) 8, 56, 822
BstDEI CTNAG 4 cut(s) 435, 546, 690, 825
BstF5I GGATG 3 cut(s) 126, 320, 556
BstFNI CGCG 1 cut(s) 144
BstKTI GATC 5 cut(s) 33, 465, 515, 556, 739
BstMAI GTCTC 3 cut(s) 141, 317, 586
BstMBI GATC 5 cut(s) 30, 462, 512, 553, 736
BstMWI GCNNNNNNNGC 9 cut(s) 55, 449, 629, 764, 770, 773, 779, 788, 803
BstNI CCWGG 3 cut(s) 77, 300, 341
BstSCI CCNGG 3 cut(s) 75, 298, 339
BstSFI CTRYAG 1 cut(s) 795
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 9 cut(s) 193, 427, 619, 641, 751, 766, 778, 781, 788
BstV2I GAAGAC 3 cut(s) 131, 423, 511
BstX2I RGATCY 2 cut(s) 512, 736
BstYI RGATCY 2 cut(s) 512, 736
BsuRI GGCC 4 cut(s) 20, 75, 469, 608
BtsCI GGATG 3 cut(s) 126, 320, 556
BtsIMutI CAGTG 3 cut(s) 153, 306, 602
Cac8I GCNNGC 3 cut(s) 8, 56, 822
CciI TCATGA 1 cut(s) 558
Cfr10I RCCGGY 1 cut(s) 782
Cfr13I GGNCC 1 cut(s) 189
CseI GACGC 1 cut(s) 50
Csp6I GTAC 2 cut(s) 238, 375
CspCI CAANNNNNGTGG 2 cut(s) 663, 698
CviAII CATG 5 cut(s) 163, 178, 203, 559, 844
CviQI GTAC 2 cut(s) 238, 375
DdeI CTNAG 4 cut(s) 435, 546, 690, 825
DpnI GATC 5 cut(s) 32, 464, 514, 555, 738
DpnII GATC 5 cut(s) 30, 462, 512, 553, 736
EaeI YGGCCR 2 cut(s) 73, 606
Eam1104I CTCTTC 2 cut(s) 179, 810
EarI CTCTTC 2 cut(s) 179, 810
Ecl136II GAGCTC 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 253
Eco31I GGTCTC 1 cut(s) 317
Eco47I GGWCC 1 cut(s) 189
Eco53kI GAGCTC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 505
Eco88I CYCGRG 2 cut(s) 62, 458
EcoICRI GAGCTC 1 cut(s) 251
EcoRII CCWGG 3 cut(s) 75, 298, 339
EcoT14I CCWWGG 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 5 cut(s) 166, 181, 206, 562, 847
FatI CATG 5 cut(s) 162, 177, 202, 558, 843
FauNDI CATATG 1 cut(s) 642
FokI GGATG 3 cut(s) 113, 307, 563
FriOI GRGCYC 1 cut(s) 253
GsaI CCCAGC 1 cut(s) 623
GsuI CTGGAG 2 cut(s) 104, 752
HaeIII GGCC 4 cut(s) 20, 75, 469, 608
HapII CCGG 1 cut(s) 783
HgaI GACGC 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 5 cut(s) 166, 181, 206, 562, 847
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 3 cut(s) 149, 199, 830
HpaII CCGG 1 cut(s) 783
HphI GGTGA 2 cut(s) 82, 428
Hpy188I TCNGA 2 cut(s) 436, 835
Hpy188III TCNNGA 9 cut(s) 62, 121, 196, 314, 409, 460, 493, 559, 731
Hpy99I CGWCG 2 cut(s) 44, 107
HpyAV CCTTC 4 cut(s) 406, 455, 709, 805
HpyCH4III ACNGT 3 cut(s) 157, 217, 379
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 4 cut(s) 54, 629, 635, 797
HpyF10VI GCNNNNNNNGC 9 cut(s) 55, 449, 629, 764, 770, 773, 779, 788, 803
HpyF3I CTNAG 4 cut(s) 435, 546, 690, 825
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 5 cut(s) 166, 181, 206, 562, 847
Kzo9I GATC 5 cut(s) 30, 462, 512, 553, 736
LguI GCTCTTC 1 cut(s) 810
LmnI GCTCC 6 cut(s) 113, 123, 248, 256, 280, 772
Lsp1109I GCAGC 9 cut(s) 193, 427, 619, 641, 751, 766, 778, 781, 788
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 3 cut(s) 88, 416, 589
MalI GATC 5 cut(s) 32, 464, 514, 555, 738
MboI GATC 5 cut(s) 30, 462, 512, 553, 736
MboII GAAGA 8 cut(s) 37, 40, 131, 196, 328, 423, 511, 827
MfeI CAATTG 3 cut(s) 279, 624, 675
MflI RGATCY 2 cut(s) 512, 736
MhlI GDGCHC 3 cut(s) 84, 162, 253
MlsI TGGCCA 2 cut(s) 75, 608
MluCI AATT 4 cut(s) 231, 279, 624, 675
MluNI TGGCCA 2 cut(s) 75, 608
MlyI GAGTC 2 cut(s) 143, 839
MmeI TCCRAC 2 cut(s) 226, 380
Mox20I TGGCCA 2 cut(s) 75, 608
MscI TGGCCA 2 cut(s) 75, 608
MseI TTAA 6 cut(s) 234, 348, 366, 537, 564, 865
MslI CAYNNNNRTG 1 cut(s) 179
Msp20I TGGCCA 2 cut(s) 75, 608
MspA1I CMGCKG 2 cut(s) 632, 779
MspI CCGG 1 cut(s) 783
MspR9I CCNGG 3 cut(s) 77, 300, 341
MunI CAATTG 3 cut(s) 279, 624, 675
MvaI CCWGG 3 cut(s) 77, 300, 341
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 9 cut(s) 55, 449, 629, 764, 770, 773, 779, 788, 803
NdeI CATATG 1 cut(s) 642
NdeII GATC 5 cut(s) 30, 462, 512, 553, 736
NlaIII CATG 5 cut(s) 166, 181, 206, 562, 847
NlaIV GGNNCC 2 cut(s) 109, 738
NmeAIII GCCGAG 1 cut(s) 46
NmuCI GTSAC 3 cut(s) 88, 416, 589
PaeR7I CTCGAG 1 cut(s) 62
PagI TCATGA 1 cut(s) 558
PciSI GCTCTTC 1 cut(s) 810
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PfeI GAWTC 1 cut(s) 199
PleI GAGTC 2 cut(s) 143, 838
PpsI GAGTC 2 cut(s) 143, 838
Psp124BI GAGCTC 1 cut(s) 253
Psp6I CCWGG 3 cut(s) 75, 298, 339
PspFI CCCAGC 1 cut(s) 619
PspGI CCWGG 3 cut(s) 75, 298, 339
PspN4I GGNNCC 2 cut(s) 109, 738
PspPI GGNCC 1 cut(s) 189
PstI CTGCAG 1 cut(s) 799
PsuI RGATCY 2 cut(s) 512, 736
PvuII CAGCTG 2 cut(s) 632, 779
RsaI GTAC 2 cut(s) 239, 376
RsaNI GTAC 2 cut(s) 238, 375
RseI CAYNNNNRTG 1 cut(s) 179
SacI GAGCTC 1 cut(s) 253
SapI GCTCTTC 1 cut(s) 810
SaqAI TTAA 6 cut(s) 234, 348, 366, 537, 564, 865
Sau3AI GATC 5 cut(s) 30, 462, 512, 553, 736
Sau96I GGNCC 1 cut(s) 189
SchI GAGTC 2 cut(s) 143, 839
ScrFI CCNGG 3 cut(s) 77, 300, 341
SduI GDGCHC 3 cut(s) 84, 162, 253
SfcI CTRYAG 1 cut(s) 795
Sfr274I CTCGAG 1 cut(s) 62
SinI GGWCC 1 cut(s) 189
SlaI CTCGAG 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 2 cut(s) 62, 705
SmoI CTYRAG 2 cut(s) 62, 705
Sse9I AATT 4 cut(s) 231, 279, 624, 675
SsiI CCGC 4 cut(s) 93, 130, 144, 774
SstI GAGCTC 1 cut(s) 253
StyD4I CCNGG 3 cut(s) 75, 298, 339
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 3 cut(s) 157, 217, 379
TaiI ACGT 1 cut(s) 105
TaqI TCGA 3 cut(s) 63, 315, 861
TasI AATT 4 cut(s) 231, 279, 624, 675
TatI WGTACW 1 cut(s) 237
TauI GCSGC 1 cut(s) 776
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 6 cut(s) 234, 348, 366, 537, 564, 865
Tru9I TTAA 6 cut(s) 234, 348, 366, 537, 564, 865
TscAI CASTG 3 cut(s) 160, 313, 609
TseFI GTSAC 3 cut(s) 88, 416, 589
TseI GCWGC 9 cut(s) 206, 440, 629, 632, 764, 776, 779, 791, 794
Tsp45I GTSAC 3 cut(s) 88, 416, 589
TspDTI ATGAA 2 cut(s) 191, 197
TspRI CASTG 3 cut(s) 160, 313, 609
VpaK11BI GGWCC 1 cut(s) 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XhoI CTCGAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.