AT5G36120

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011124
Physical Location & Seq
Reverse (-)
14198586 .. 14199431
846 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G36120.1

Sequence Viewer

Length: 525 bp
ATGACGACAGTGACCACCAGCTTCGTCTCTTTCTCGCCGGCATTGATGATTTTTCAGAAGAAATCACGACGATCCTCTCCAAATTTCCGCAATCGATCCACGTCTCTTCCCATAGTTTCAGCAACATTAAGCCACATAGAAGAAGCAGCCACAACAACAAATCTCATTCGACAGACGAATTCCATTTCGGAATCGTTGCGTAACATTTCTCTAGCAGATTTAGATCCAGGAACAGCGAAGCTCGCTATTGGTATCTTAGGTCCAGCTTTATCAGCTTTTGGATTTCTATTCATTTTGAGAATCGTTATGTCTTGGTACCCGAAACTTCCCGTTGACAAGTTTCCGTACGTTTTAGCTTACGCTCCGACAGAACCAATCCTTGTTCAGACAAGGAAAGTGATTCCACCACTTGCAGGTGTTGATGTTACTCCTGTGGTTTGGTTTGGGCTTGTGAGTTTCCTTAGTGAGATTTTGGTTGGTCCTCAAGGACTTCTTGTTCTTGTTTCTCAACAACAAGTTAATTAG

Protein Analysis

174

Amino Acids

18.97

Weight (kDa)

9.89

Isoelectric Point (pI)

58.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB3_YggT PF02325 89 - 158 2.2e-15 CCB3/YggT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 404
Acc36I ACCTGC 1 cut(s) 404
Acc65I GGTACC 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 315
AciI CCGC 1 cut(s) 88
AclWI GGATC 3 cut(s) 66, 90, 218
AcsI RAATTY 2 cut(s) 82, 178
AfaI GTAC 2 cut(s) 317, 347
AfiI CCNNNNNNNGG 1 cut(s) 413
AjiI CACGTC 1 cut(s) 102
AjnI CCWGG 1 cut(s) 226
AloI GAACNNNNNNTCC 2 cut(s) 480, 512
AluBI AGCT 5 cut(s) 21, 241, 266, 275, 356
AluI AGCT 5 cut(s) 21, 241, 266, 275, 356
Alw26I GTCTC 2 cut(s) 31, 108
AlwI GGATC 3 cut(s) 66, 90, 218
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 2 cut(s) 82, 178
Asp718I GGTACC 1 cut(s) 315
AspS9I GGNCC 2 cut(s) 260, 479
AvaII GGWCC 2 cut(s) 260, 479
BanI GGYRCC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 228
BcoDI GTCTC 2 cut(s) 31, 108
BfaI CTAG 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 404
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 228
Bme18I GGWCC 2 cut(s) 260, 479
BmgBI CACGTC 1 cut(s) 102
BmgT120I GGNCC 2 cut(s) 260, 479
BmiI GGNNCC 1 cut(s) 317
BmrFI CCNGG 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 468
Bsa29I ATCGAT 1 cut(s) 94
BsaBI GATNNNNATC 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 413
Bse118I RCCGGY 1 cut(s) 37
Bse8I GATNNNNATC 1 cut(s) 222
BseBI CCWGG 1 cut(s) 228
BseCI ATCGAT 1 cut(s) 94
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 413
BseXI GCAGC 1 cut(s) 158
BshNI GGYRCC 1 cut(s) 315
BshVI ATCGAT 1 cut(s) 94
BsiSI CCGG 1 cut(s) 38
BsiWI CGTACG 1 cut(s) 345
BslI CCNNNNNNNGG 1 cut(s) 413
BsmAI GTCTC 2 cut(s) 31, 108
BsmBI CGTCTC 2 cut(s) 31, 108
Bsp143I GATC 3 cut(s) 71, 95, 223
BspACI CCGC 1 cut(s) 88
BspDI ATCGAT 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 317
BspMI ACCTGC 1 cut(s) 404
BspPI GGATC 3 cut(s) 66, 90, 218
BspT107I GGYRCC 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 37
BssMI GATC 3 cut(s) 71, 95, 223
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 111
BstC8I GCNNGC 2 cut(s) 39, 243
BstDEI CTNAG 2 cut(s) 256, 461
BstKTI GATC 3 cut(s) 74, 98, 226
BstMAI GTCTC 2 cut(s) 31, 108
BstMBI GATC 3 cut(s) 71, 95, 223
BstMWI GCNNNNNNNGC 2 cut(s) 242, 272
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
Bsu15I ATCGAT 1 cut(s) 94
BsuTUI ATCGAT 1 cut(s) 94
BtrI CACGTC 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 15
BveI ACCTGC 1 cut(s) 404
Cac8I GCNNGC 2 cut(s) 39, 243
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 260, 479
ClaI ATCGAT 1 cut(s) 94
Csp6I GTAC 2 cut(s) 316, 346
CviJI RGCY 8 cut(s) 21, 132, 149, 241, 266, 275, 356, 448
CviKI_1 RGCY 8 cut(s) 21, 132, 149, 241, 266, 275, 356, 448
CviQI GTAC 2 cut(s) 316, 346
DdeI CTNAG 2 cut(s) 256, 461
DpnI GATC 3 cut(s) 73, 97, 225
DpnII GATC 3 cut(s) 71, 95, 223
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco47I GGWCC 2 cut(s) 260, 479
EcoRI GAATTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 226
Esp3I CGTCTC 2 cut(s) 31, 108
FaiI YATR 3 cut(s) 113, 137, 308
FalI AAGNNNNNCTT 2 cut(s) 477, 509
Fnu4HI GCNGC 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 147
FspBI CTAG 1 cut(s) 212
GluI GCNGC 1 cut(s) 147
HapII CCGG 1 cut(s) 38
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 3 cut(s) 191, 300, 400
HpaII CCGG 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 4 cut(s) 57, 190, 366, 387
Hpy188III TCNNGA 1 cut(s) 66
Hpy8I GTNNAC 1 cut(s) 334
Hpy99I CGWCG 1 cut(s) 72
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 2 cut(s) 101, 348
HpyCH4V TGCA 1 cut(s) 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 272
HpyF3I CTNAG 2 cut(s) 256, 461
HpySE526I ACGT 2 cut(s) 101, 348
KpnI GGTACC 1 cut(s) 319
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
Kzo9I GATC 3 cut(s) 71, 95, 223
LmnI GCTCC 1 cut(s) 367
LpnPI CCDG 7 cut(s) 31, 51, 213, 240, 276, 399, 444
Lsp1109I GCAGC 1 cut(s) 158
MaeI CTAG 1 cut(s) 212
MaeII ACGT 2 cut(s) 101, 348
MaeIII GTNAC 3 cut(s) 10, 200, 424
MalI GATC 3 cut(s) 73, 97, 225
MboI GATC 3 cut(s) 71, 95, 223
MboII GAAGA 3 cut(s) 70, 98, 152
MflI RGATCY 1 cut(s) 223
MluCI AATT 3 cut(s) 82, 178, 520
MmeI TCCRAC 1 cut(s) 389
MnlI CCTC 2 cut(s) 85, 492
MroNI GCCGGC 1 cut(s) 37
MseI TTAA 2 cut(s) 128, 519
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 2 cut(s) 242, 272
NaeI GCCGGC 1 cut(s) 39
NdeII GATC 3 cut(s) 71, 95, 223
NgoMIV GCCGGC 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 317
NmuCI GTSAC 1 cut(s) 10
PaqCI CACCTGC 1 cut(s) 404
PdiI GCCGGC 1 cut(s) 39
PfeI GAWTC 3 cut(s) 191, 300, 400
Pfl23II CGTACG 1 cut(s) 345
PfoI TCCNGGA 1 cut(s) 226
PkrI GCNGC 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspLI CGTACG 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 317
PspPI GGNCC 2 cut(s) 260, 479
PsuI RGATCY 1 cut(s) 223
RsaI GTAC 2 cut(s) 317, 347
RsaNI GTAC 2 cut(s) 316, 346
SaqAI TTAA 2 cut(s) 128, 519
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 3 cut(s) 71, 95, 223
Sau96I GGNCC 2 cut(s) 260, 479
ScrFI CCNGG 1 cut(s) 228
SetI ASST 9 cut(s) 23, 104, 243, 262, 268, 277, 351, 358, 418
SinI GGWCC 2 cut(s) 260, 479
SmlI CTYRAG 1 cut(s) 483
SmoI CTYRAG 1 cut(s) 483
Sse9I AATT 3 cut(s) 82, 178, 520
SsiI CCGC 1 cut(s) 88
SspMI CTAG 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 2 cut(s) 104, 351
TaqI TCGA 2 cut(s) 94, 169
TasI AATT 3 cut(s) 82, 178, 520
TfiI GAWTC 3 cut(s) 191, 300, 400
Tru1I TTAA 2 cut(s) 128, 519
Tru9I TTAA 2 cut(s) 128, 519
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 1 cut(s) 280
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 2 cut(s) 260, 479
XapI RAATTY 2 cut(s) 82, 178
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.